| Year |
Citation |
Score |
| 2023 |
Sykes JR, Denby KJ, Franks DW. Computer vision for plant pathology: A review with examples from cocoa agriculture. Applications in Plant Sciences. 12: e11559. PMID 38638617 DOI: 10.1002/aps3.11559 |
0.481 |
|
| 2022 |
McLellan H, Harvey SE, Steinbrenner J, Armstrong MR, He Q, Clewes R, Pritchard L, Wang W, Wang S, Nussbaumer T, Dohai B, Luo Q, Kumari P, Duan H, Roberts A, ... ... Denby K, et al. Exploiting breakdown in nonhost effector-target interactions to boost host disease resistance. Proceedings of the National Academy of Sciences of the United States of America. 119: e2114064119. PMID 35994659 DOI: 10.1073/pnas.2114064119 |
0.35 |
|
| 2020 |
Oates CN, Denby KJ, Myburg AA, Slippers B, Naidoo S. Insect egg-induced physiological changes and transcriptional reprogramming leading to gall formation. Plant, Cell & Environment. PMID 33125164 DOI: 10.1111/pce.13930 |
0.31 |
|
| 2020 |
Harvey S, Kumari P, Lapin D, Griebel T, Hickman R, Guo W, Zhang R, Parker JE, Beynon J, Denby K, Steinbrenner J. Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility. Plos Pathogens. 16: e1008835. PMID 32785253 DOI: 10.1371/Journal.Ppat.1008835 |
0.426 |
|
| 2020 |
Xu H, Lantzouni O, Bruggink T, Benjamins R, Lanfermeijer F, Denby K, Schwechheimer C, Bassel GW. A Molecular Signal Integration Network Underpinning Arabidopsis Seed Germination. Current Biology : Cb. PMID 32763174 DOI: 10.1016/J.Cub.2020.07.012 |
0.387 |
|
| 2020 |
Lehmann S, Dominguez-Ferreras A, Huang WJ, Denby K, Ntoukakis V, Schäfer P. Novel markers for high-throughput protoplast-based analyses of phytohormone signaling. Plos One. 15: e0234154. PMID 32497144 DOI: 10.1371/Journal.Pone.0234154 |
0.389 |
|
| 2018 |
Foo M, Gherman I, Zhang P, Bates DG, Denby K. A Framework for Engineering Stress Resilient Plants using Genetic Feedback Control and Regulatory Network Rewiring. Acs Synthetic Biology. PMID 29746091 DOI: 10.1021/Acssynbio.8B00037 |
0.513 |
|
| 2018 |
Beacham AM, Hand P, Barker GC, Denby KJ, Teakle GR, Walley PG, Monaghan JM. Addressing the threat of climate change to agriculture requires improving crop resilience to short-term abiotic stress Outlook On Agriculture. 47: 270-276. DOI: 10.1177/0030727018807722 |
0.308 |
|
| 2017 |
Hickman R, van Verk MC, Van Dijken AJH, Pereira Mendes M, Vroegop-Vos IA, Caarls L, Steenbergen M, Van Der Nagel I, Wesselink GJ, Jironkin A, Talbot A, Rhodes J, de Vries M, Schuurink RC, Denby K, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. The Plant Cell. PMID 28827376 DOI: 10.1105/Tpc.16.00958 |
0.443 |
|
| 2017 |
Foo M, Gherman I, Denby KJ, Bates DG. Control Strategies for Mitigating the Effect of External Perturbations on Gene Regulatory Networks Ifac-Papersonline. 50: 12647-12652. DOI: 10.1016/J.Ifacol.2017.08.2237 |
0.382 |
|
| 2016 |
Oates CN, Denby KJ, Myburg AA, Slippers B, Naidoo S. Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology. International Journal of Molecular Sciences. 17. PMID 27869732 DOI: 10.3390/Ijms17111891 |
0.477 |
|
| 2016 |
Bechtold U, Penfold CA, Jenkins DJ, Legaie R, Moore JD, Lawson T, Matthews JS, Vialet-Chabrand SR, Baxter L, Subramaniam S, Hickman R, Florance H, Sambles C, Salmon DL, Feil R, ... ... Denby KJ, et al. Time-series transcriptomics reveals that AGAMOUS-LIKE22 links primary metabolism to developmental processes in drought-stressed Arabidopsis. The Plant Cell. PMID 26842464 DOI: 10.1105/Tpc.15.00910 |
0.379 |
|
| 2015 |
Lewis LA, Polanski K, de Torres-Zabala M, Jayaraman S, Bowden L, Moore J, Penfold CA, Jenkins DJ, Hill C, Baxter L, Kulasekaran S, Truman W, Littlejohn G, Prusinska J, Mead A, ... ... Denby K, et al. Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000. The Plant Cell. PMID 26566919 DOI: 10.1105/Tpc.15.00471 |
0.415 |
|
| 2015 |
Ingle RA, Stoker C, Stone W, Adams N, Smith R, Grant M, Carré I, Roden LC, Denby KJ. Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea. The Plant Journal : For Cell and Molecular Biology. PMID 26466558 DOI: 10.1111/Tpj.13050 |
0.437 |
|
| 2015 |
Atwell S, Corwin JA, Soltis NE, Subedy A, Denby KJ, Kliebenstein DJ. Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology. 6: 996. PMID 26441923 DOI: 10.3389/Fmicb.2015.00996 |
0.564 |
|
| 2015 |
Windram O, Denby KJ. Modelling signaling networks underlying plant defence. Current Opinion in Plant Biology. 27: 165-71. PMID 26295907 DOI: 10.1016/J.Pbi.2015.07.007 |
0.44 |
|
| 2015 |
Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ. Reassess the t Test: Interact with All Your Data via ANOVA. The Plant Cell. 27: 2088-94. PMID 26220933 DOI: 10.1105/Tpc.15.00238 |
0.597 |
|
| 2015 |
Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, ... ... Denby K, et al. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. The New Phytologist. PMID 26171760 DOI: 10.1111/Nph.13532 |
0.356 |
|
| 2015 |
Windram O, Denby KJ. Modelling signaling networks underlying plant defence Current Opinion in Plant Biology. 27: 165-171. DOI: 10.1016/j.pbi.2015.07.007 |
0.336 |
|
| 2014 |
Carstens M, McCrindle TK, Adams N, Diener A, Guzha DT, Murray SL, Parker JE, Denby KJ, Ingle RA. Increased resistance to biotrophic pathogens in the Arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. Plos One. 9: e109853. PMID 25303634 DOI: 10.1371/Journal.Pone.0109853 |
0.458 |
|
| 2014 |
Windram O, Penfold CA, Denby KJ. Network modeling to understand plant immunity. Annual Review of Phytopathology. 52: 93-111. PMID 24821185 DOI: 10.1146/Annurev-Phyto-102313-050103 |
0.475 |
|
| 2014 |
Polanski K, Rhodes J, Hill C, Zhang P, Jenkins DJ, Kiddle SJ, Jironkin A, Beynon J, Buchanan-Wollaston V, Ott S, Denby KJ. Wigwams: identifying gene modules co-regulated across multiple biological conditions. Bioinformatics (Oxford, England). 30: 962-70. PMID 24351708 DOI: 10.1093/Bioinformatics/Btt728 |
0.307 |
|
| 2013 |
Hickman R, Hill C, Penfold CA, Breeze E, Bowden L, Moore JD, Zhang P, Jackson A, Cooke E, Bewicke-Copley F, Mead A, Beynon J, Wild DL, Denby KJ, Ott S, et al. A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal : For Cell and Molecular Biology. 75: 26-39. PMID 23578292 DOI: 10.1111/Tpj.12194 |
0.372 |
|
| 2013 |
Van der Linden L, Bredenkamp J, Naidoo S, Fouché-Weich J, Denby KJ, Genin S, Marco Y, Berger DK. Gene-for-gene tolerance to bacterial wilt in Arabidopsis. Molecular Plant-Microbe Interactions : Mpmi. 26: 398-406. PMID 23234403 DOI: 10.1094/Mpmi-07-12-0188-R |
0.425 |
|
| 2012 |
Baxter L, Jironkin A, Hickman R, Moore J, Barrington C, Krusche P, Dyer NP, Buchanan-Wollaston V, Tiskin A, Beynon J, Denby K, Ott S. Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell. 24: 3949-65. PMID 23110901 DOI: 10.1105/Tpc.112.103010 |
0.397 |
|
| 2012 |
Windram O, Madhou P, McHattie S, Hill C, Hickman R, Cooke E, Jenkins DJ, Penfold CA, Baxter L, Breeze E, Kiddle SJ, Rhodes J, Atwell S, Kliebenstein DJ, Kim YS, ... ... Denby KJ, et al. Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell. 24: 3530-57. PMID 23023172 DOI: 10.1105/Tpc.112.102046 |
0.627 |
|
| 2012 |
Çevik V, Kidd BN, Zhang P, Hill C, Kiddle S, Denby KJ, Holub EB, Cahill DM, Manners JM, Schenk PM, Beynon J, Kazan K. MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiology. 160: 541-55. PMID 22822211 DOI: 10.1104/Pp.112.202697 |
0.344 |
|
| 2012 |
Penfold CA, Buchanan-Wollaston V, Denby KJ, Wild DL. Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics (Oxford, England). 28: i233-41. PMID 22689766 DOI: 10.1093/Bioinformatics/Bts222 |
0.35 |
|
| 2012 |
Mulema JM, Denby KJ. Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction. Molecular Biology Reports. 39: 4039-49. PMID 21785916 DOI: 10.1007/S11033-011-1185-4 |
0.381 |
|
| 2011 |
Alexandersson E, Becker JV, Jacobson D, Nguema-Ona E, Steyn C, Denby KJ, Vivier MA. Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. Bmc Research Notes. 4: 493. PMID 22078230 DOI: 10.1186/1756-0500-4-493 |
0.368 |
|
| 2011 |
Lloyd AJ, William Allwood J, Winder CL, Dunn WB, Heald JK, Cristescu SM, Sivakumaran A, Harren FJ, Mulema J, Denby K, Goodacre R, Smith AR, Mur LA. Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea. The Plant Journal : For Cell and Molecular Biology. 67: 852-68. PMID 21575089 DOI: 10.1111/J.1365-313X.2011.04639.X |
0.348 |
|
| 2011 |
Morrissey ER, Juárez MA, Denby KJ, Burroughs NJ. Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression. Biostatistics (Oxford, England). 12: 682-94. PMID 21551122 DOI: 10.1093/Biostatistics/Kxr009 |
0.36 |
|
| 2011 |
Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, ... ... Denby K, et al. High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. The Plant Cell. 23: 873-94. PMID 21447789 DOI: 10.1105/Tpc.111.083345 |
0.374 |
|
| 2010 |
Morrissey ER, Juárez MA, Denby KJ, Burroughs NJ. On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics (Oxford, England). 26: 2305-12. PMID 20639410 DOI: 10.1093/Bioinformatics/Btq421 |
0.336 |
|
| 2010 |
Stegle O, Denby KJ, Cooke EJ, Wild DL, Ghahramani Z, Borgwardt KM. A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 355-67. PMID 20377450 DOI: 10.1089/Cmb.2009.0175 |
0.338 |
|
| 2009 |
Petersen LN, Ingle RA, Knight MR, Denby KJ. OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany. 60: 3727-35. PMID 19574254 DOI: 10.1093/Jxb/Erp219 |
0.412 |
|
| 2007 |
Murray SL, Ingle RA, Petersen LN, Denby KJ. Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein. Molecular Plant-Microbe Interactions : Mpmi. 20: 1431-8. PMID 17977154 DOI: 10.1094/Mpmi-20-11-1431 |
0.411 |
|
| 2007 |
Walford S-, Denby K, Shen A, Farrant JM, Illing N. Comparison of desiccation-induced gene expression in vegetative tissue and seed of the resurrection plant, Xerophyta humilis South African Journal of Botany. 73: 495. DOI: 10.1016/J.Sajb.2007.04.034 |
0.404 |
|
| 2007 |
Illing N, Walford S, Shen A, Heerden JV, Immelman N, Mulder N, Denby KJ. Molecular tools to study desiccation tolerance in the resurrection plant Xerophyta humilis South African Journal of Botany. 73: 487. DOI: 10.1016/J.Sajb.2007.04.015 |
0.437 |
|
| 2007 |
Naidoo S, Murray SL, Denby KJ, Berger DK. Microarray analysis of the Arabidopsis thaliana cir1 (constitutively induced resistance 1) mutant reveals candidate defence response genes against Pseudomonas syringae pv tomato DC3000 South African Journal of Botany. 73: 412-421. DOI: 10.1016/J.Sajb.2007.03.006 |
0.444 |
|
| 2006 |
Ingle RA, Carstens M, Denby KJ. PAMP recognition and the plant-pathogen arms race. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 880-9. PMID 16937346 DOI: 10.1002/Bies.20457 |
0.452 |
|
| 2005 |
Illing N, Denby KJ, Collett H, Shen A, Farrant JM. The signature of seeds in resurrection plants: a molecular and physiological comparison of desiccation tolerance in seeds and vegetative tissues. Integrative and Comparative Biology. 45: 771-87. PMID 21676829 DOI: 10.1093/Icb/45.5.771 |
0.403 |
|
| 2005 |
Murray SL, Adams N, Kliebenstein DJ, Loake GJ, Denby KJ. A constitutive PR-1::luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to both biotrophic and necrotrophic pathogens. Molecular Plant Pathology. 6: 31-41. PMID 20565636 DOI: 10.1111/J.1364-3703.2004.00261.X |
0.61 |
|
| 2005 |
Kliebenstein DJ, Rowe HC, Denby KJ. Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity. The Plant Journal : For Cell and Molecular Biology. 44: 25-36. PMID 16167893 DOI: 10.1111/J.1365-313X.2005.02508.X |
0.61 |
|
| 2005 |
Denby K, Gehring C. Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis. Trends in Biotechnology. 23: 547-52. PMID 16165235 DOI: 10.1016/J.Tibtech.2005.09.001 |
0.429 |
|
| 2005 |
Denby KJ, Jason LJ, Murray SL, Last RL. ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways. The Plant Journal : For Cell and Molecular Biology. 41: 673-84. PMID 15703055 DOI: 10.1111/J.1365-313X.2005.02327.X |
0.583 |
|
| 2004 |
Donaldson L, Ludidi N, Knight MR, Gehring C, Denby K. Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels. Febs Letters. 569: 317-20. PMID 15225654 DOI: 10.1016/J.Febslet.2004.06.016 |
0.323 |
|
| 2004 |
Denby KJ, Kumar P, Kliebenstein DJ. Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 38: 473-86. PMID 15086796 DOI: 10.1111/J.0960-7412.2004.02059.X |
0.558 |
|
| 2004 |
Collett H, Shen A, Gardner M, Farrant JM, Denby KJ, Illing N. Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration Physiologia Plantarum. 122: 39-53. DOI: 10.1111/J.1399-3054.2004.00381.X |
0.395 |
|
| 1999 |
Denby KJ, Last RL. Diverse regulatory mechanisms of amino acid biosynthesis in plants. Genetic Engineering. 21: 173-89. PMID 10822497 DOI: 10.1007/978-1-4615-4707-5_9 |
0.597 |
|
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