| Year |
Citation |
Score |
| 2023 |
Cho E, Lee SH, Dean RA, Jeon J. Distinct dynamics of the nucleolus in response to nutrient availability and during development in the rice blast fungus. Mbio. e0184423. PMID 37768072 DOI: 10.1128/mbio.01844-23 |
0.519 |
|
| 2020 |
Wang M, Eyre AW, Thon MR, Oh Y, Dean RA. Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds. Frontiers in Microbiology. 11: 559728. PMID 33013792 DOI: 10.3389/Fmicb.2020.559728 |
0.331 |
|
| 2020 |
Wang M, Dean RA. Movement of small RNAs in and between plants and fungi. Molecular Plant Pathology. PMID 32027079 DOI: 10.1111/Mpp.12911 |
0.344 |
|
| 2018 |
Raman V, Meyers BC, Dean RA, Donofrio NM. Characterizing Small RNAs in Filamentous Fungi Using the Rice Blast Fungus, Magnaporthe oryzae, as an Example. Methods in Molecular Biology (Clifton, N.J.). 1848: 53-66. PMID 30182228 DOI: 10.1007/978-1-4939-8724-5_5 |
0.39 |
|
| 2016 |
Sharpee W, Oh Y, Yi M, Franck W, Eyre A, Okagaki L, Valent B, Dean R. Identification and Characterization of Suppressors of Plant Cell Death (SPD) Genes from Magnaporthe oryzae. Molecular Plant Pathology. PMID 27301772 DOI: 10.1111/Mpp.12449 |
0.405 |
|
| 2016 |
Okagaki LH, Sailsbery JK, Eyre AW, Dean RA. Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi. Bmc Genomics. 17: 135. PMID 26911875 DOI: 10.1186/S12864-016-2491-Y |
0.796 |
|
| 2016 |
Okagaki LH, Dean RA. The influence of funding sources on the scientific method. Molecular Plant Pathology. PMID 26840926 DOI: 10.1111/Mpp.12380 |
0.398 |
|
| 2016 |
Sharpee WC, Dean RA. Form and function of fungal and oomycete effectors Fungal Biology Reviews. 30: 62-73. DOI: 10.1016/J.Fbr.2016.04.001 |
0.364 |
|
| 2015 |
Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, ... ... Dean RA, et al. Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi. G3 (Bethesda, Md.). PMID 26416668 DOI: 10.1534/G3.115.020057 |
0.771 |
|
| 2015 |
Franck WL, Gokce E, Randall SM, Oh Y, Eyre A, Muddiman DC, Dean RA. Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development. Journal of Proteome Research. 14: 2408-24. PMID 25926025 DOI: 10.1021/Pr501064Q |
0.311 |
|
| 2015 |
Nierman WC, Yu J, Fedorova-Abrams ND, Losada L, Cleveland TE, Bhatnagar D, Bennett JW, Dean R, Payne GA. Genome Sequence of Aspergillus flavus NRRL 3357, a Strain That Causes Aflatoxin Contamination of Food and Feed. Genome Announcements. 3. PMID 25883274 DOI: 10.1128/Genomea.00168-15 |
0.354 |
|
| 2015 |
Jeon J, Choi J, Lee GW, Park SY, Huh A, Dean RA, Lee YH. Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae. Scientific Reports. 5: 8567. PMID 25708804 DOI: 10.1038/Srep08567 |
0.557 |
|
| 2014 |
Cubeta MA, Thomas E, Dean RA, Jabaji S, Neate SM, Tavantzis S, Toda T, Vilgalys R, Bharathan N, Fedorova-Abrams N, Pakala SB, Pakala SM, Zafar N, Joardar V, Losada L, et al. Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP. Genome Announcements. 2. PMID 25359908 DOI: 10.1128/Genomea.01072-14 |
0.393 |
|
| 2014 |
Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA. Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3. Fems Microbiology Letters. 352: 165-73. PMID 24461055 DOI: 10.1111/1574-6968.12387 |
0.445 |
|
| 2013 |
Jeon J, Choi J, Lee GW, Dean RA, Lee YH. Experimental evolution reveals genome-wide spectrum and dynamics of mutations in the rice blast fungus, Magnaporthe oryzae. Plos One. 8: e65416. PMID 23741492 DOI: 10.1371/Journal.Pone.0065416 |
0.583 |
|
| 2013 |
Franck WL, Gokce E, Oh Y, Muddiman DC, Dean RA. Temporal analysis of the magnaporthe oryzae proteome during conidial germination and cyclic AMP (cAMP)-mediated appressorium formation. Molecular & Cellular Proteomics : McP. 12: 2249-65. PMID 23665591 DOI: 10.1074/Mcp.M112.025874 |
0.333 |
|
| 2012 |
Gokce E, Franck WL, Oh Y, Dean RA, Muddiman DC. In-depth analysis of the Magnaporthe oryzae conidial proteome. Journal of Proteome Research. 11: 5827-35. PMID 23039028 DOI: 10.1021/Pr300604S |
0.324 |
|
| 2012 |
Sailsbery JK, Dean RA. Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites. Bmc Evolutionary Biology. 12: 154. PMID 22920570 DOI: 10.1186/1471-2148-12-154 |
0.758 |
|
| 2012 |
Oh Y, Franck WL, Han SO, Shows A, Gokce E, Muddiman DC, Dean RA. Polyubiquitin is required for growth, development and pathogenicity in the rice blast fungus Magnaporthe oryzae. Plos One. 7: e42868. PMID 22900059 DOI: 10.1371/Journal.Pone.0042868 |
0.359 |
|
| 2012 |
Xue M, Yang J, Li Z, Hu S, Yao N, Dean RA, Zhao W, Shen M, Zhang H, Li C, Liu L, Cao L, Xu X, Xing Y, Hsiang T, et al. Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae. Plos Genetics. 8: e1002869. PMID 22876203 DOI: 10.1371/Journal.Pgen.1002869 |
0.447 |
|
| 2012 |
Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, Foster GD. The Top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13: 414-30. PMID 22471698 DOI: 10.1111/J.1364-3703.2011.00783.X |
0.31 |
|
| 2012 |
Sailsbery JK, Atchley WR, Dean RA. Phylogenetic analysis and classification of the fungal bHLH domain. Molecular Biology and Evolution. 29: 1301-18. PMID 22114358 DOI: 10.1093/Molbev/Msr288 |
0.778 |
|
| 2012 |
Nunes CC, Dean RA. Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies. Molecular Plant Pathology. 13: 519-29. PMID 22111693 DOI: 10.1111/J.1364-3703.2011.00766.X |
0.738 |
|
| 2012 |
Dean R, Kan JALV, Pretorius ZA, Hammond-Kosack KE, Pietro AD, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, Foster GD. The Top 10 fungal pathogens in molecular plant pathology: Top 10 fungal pathogens Molecular Plant Pathology. 13: 414-430. DOI: 10.1111/J.1364-3703.2012.2011.00783.X |
0.309 |
|
| 2011 |
Nunes CC, Gowda M, Sailsbery J, Xue M, Chen F, Brown DE, Oh Y, Mitchell TK, Dean RA. Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae. Bmc Genomics. 12: 288. PMID 21635781 DOI: 10.1186/1471-2164-12-288 |
0.765 |
|
| 2011 |
Li G, Zhou X, Kong L, Wang Y, Zhang H, Zhu H, Mitchell TK, Dean RA, Xu JR. MoSfl1 is important for virulence and heat tolerance in Magnaporthe oryzae. Plos One. 6: e19951. PMID 21625508 DOI: 10.1371/Journal.Pone.0019951 |
0.331 |
|
| 2011 |
Mathioni SM, Beló A, Rizzo CJ, Dean RA, Donofrio NM. Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses. Bmc Genomics. 12: 49. PMID 21247492 DOI: 10.1186/1471-2164-12-49 |
0.32 |
|
| 2011 |
Nunes CC, Sailsbery JK, Dean RA. Characterization and application of small RNAs and RNA silencing mechanisms in fungi Fungal Biology Reviews. 25: 172-180. DOI: 10.1016/J.Fbr.2011.10.001 |
0.756 |
|
| 2010 |
Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, et al. Unifying themes in microbial associations with animal and plant hosts described using the gene ontology. Microbiology and Molecular Biology Reviews : Mmbr. 74: 479-503. PMID 21119014 DOI: 10.1128/Mmbr.00017-10 |
0.371 |
|
| 2010 |
Gowda M, Nunes CC, Sailsbery J, Xue M, Chen F, Nelson CA, Brown DE, Oh Y, Meng S, Mitchell T, Hagedorn CH, Dean RA. Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae. Nucleic Acids Research. 38: 7558-69. PMID 20660015 DOI: 10.1093/Nar/Gkq583 |
0.792 |
|
| 2009 |
Torto-Alalibo T, Meng S, Dean RA. Infection strategies of filamentous microbes described with the Gene Ontology. Trends in Microbiology. 17: 320-7. PMID 19577927 DOI: 10.1016/J.Tim.2009.05.003 |
0.44 |
|
| 2009 |
Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA. Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae. Bmc Microbiology. 9: S8. PMID 19278556 DOI: 10.1186/1471-2180-9-S1-S8 |
0.457 |
|
| 2009 |
Meng S, Torto-Alalibo T, Chibucos MC, Tyler BM, Dean RA. Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms. Bmc Microbiology. 9: S7. PMID 19278555 DOI: 10.1186/1471-2180-9-S1-S7 |
0.332 |
|
| 2008 |
Yu J, Payne GA, Nierman WC, Machida M, Bennett JW, Campbell BC, Robens JF, Bhatnagar D, Dean RA, Cleveland TE. Aspergillus flavus genomics as a tool for studying the mechanism of aflatoxin formation. Food Additives & Contaminants. Part a, Chemistry, Analysis, Control, Exposure & Risk Assessment. 25: 1152-7. PMID 19238624 DOI: 10.1080/02652030802213375 |
0.458 |
|
| 2008 |
Smith CA, Robertson D, Yates B, Nielsen DM, Brown D, Dean RA, Payne GA. The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus. Current Genetics. 54: 241-69. PMID 18813928 DOI: 10.1007/S00294-008-0215-9 |
0.385 |
|
| 2008 |
Oh Y, Donofrio N, Pan H, Coughlan S, Brown DE, Meng S, Mitchell T, Dean RA. Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae. Genome Biology. 9: R85. PMID 18492280 DOI: 10.1186/Gb-2008-9-5-R85 |
0.327 |
|
| 2008 |
Powell AJ, Conant GC, Brown DE, Carbone I, Dean RA. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. Bmc Genomics. 9: 147. PMID 18373860 DOI: 10.1186/1471-2164-9-147 |
0.376 |
|
| 2008 |
Shao M, Wang J, Dean RA, Lin Y, Gao X, Hu S. Expression of a harpin-encoding gene in rice confers durable nonspecific resistance to Magnaporthe grisea. Plant Biotechnology Journal. 6: 73-81. PMID 18005094 DOI: 10.1111/J.1467-7652.2007.00304.X |
0.325 |
|
| 2008 |
Altunay M, Byrd GT, Brown DE, Dean RA. An Interaction-based Access Control model (IBAC) for collaborative services 2008 International Symposium On Collaborative Technologies and Systems, Cts'08. 547-554. DOI: 10.1109/CTS.2008.4543977 |
0.725 |
|
| 2007 |
Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, et al. What can comparative genomics tell us about species concepts in the genus Aspergillus? Studies in Mycology. 59: 11-7. PMID 18490942 DOI: 10.3114/Sim.2007.59.02 |
0.35 |
|
| 2007 |
Adomas A, Heller G, Li G, Olson A, Chu TM, Osborne J, Craig D, van Zyl L, Wolfinger R, Sederoff R, Dean RA, Stenlid J, Finlay R, Asiegbu FO. Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion. Tree Physiology. 27: 1441-58. PMID 17669735 DOI: 10.1093/Treephys/27.10.1441 |
0.364 |
|
| 2007 |
Torto-Alalibo TA, Tripathy S, Smith BM, Arredondo FD, Zhou L, Li H, Chibucos MC, Qutob D, Gijzen M, Mao C, Sobral BW, Waugh ME, Mitchell TK, Dean RA, Tyler BM. Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection. Molecular Plant-Microbe Interactions : Mpmi. 20: 781-93. PMID 17601166 DOI: 10.1094/Mpmi-20-7-0781 |
0.436 |
|
| 2007 |
Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, et al. Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1035-49. PMID 17600737 DOI: 10.1016/J.Fgb.2007.05.001 |
0.319 |
|
| 2007 |
Jeong JS, Mitchell TK, Dean RA. The Magnaporthe grisea snodprot1 homolog, MSP1, is required for virulence. Fems Microbiology Letters. 273: 157-65. PMID 17590228 DOI: 10.1111/J.1574-6968.2007.00796.X |
0.565 |
|
| 2007 |
Meng Y, Patel G, Heist M, Betts MF, Tucker SL, Galadima N, Donofrio NM, Brown D, Mitchell TK, Li L, Xu JR, Orbach M, Thon M, Dean RA, Farman ML. A systematic analysis of T-DNA insertion events in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1050-64. PMID 17544743 DOI: 10.1016/J.Fgb.2007.04.002 |
0.331 |
|
| 2007 |
Xu JR, Zhao X, Dean RA. From genes to genomes: a new paradigm for studying fungal pathogenesis in Magnaporthe oryzae. Advances in Genetics. 57: 175-218. PMID 17352905 DOI: 10.1016/S0065-2660(06)57005-1 |
0.463 |
|
| 2007 |
Gowda M, Venu RC, Li H, Jantasuriyarat C, Chen S, Bellizzi M, Pampanwar V, Kim H, Dean RA, Stahlberg E, Wing R, Soderlund C, Wang GL. Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiology. 144: 524-33. PMID 17351054 DOI: 10.1104/Pp.107.095653 |
0.402 |
|
| 2007 |
Deng J, Carbone I, Dean RA. The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes. Bmc Evolutionary Biology. 7: 30. PMID 17324274 DOI: 10.1186/1471-2148-7-30 |
0.355 |
|
| 2006 |
Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310 |
0.474 |
|
| 2006 |
Soderlund C, Haller K, Pampanwar V, Ebbole D, Farman M, Orbach MJ, Wang GL, Wing R, Xu JR, Brown D, Mitchell T, Dean R. MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions. Molecular Plant-Microbe Interactions : Mpmi. 19: 1055-61. PMID 17022169 DOI: 10.1094/Mpmi-19-1055 |
0.385 |
|
| 2006 |
Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Research. 34: 4685-701. PMID 16963777 DOI: 10.1093/Nar/Gkl588 |
0.383 |
|
| 2006 |
Donofrio NM, Oh Y, Lundy R, Pan H, Brown DE, Jeong JS, Coughlan S, Mitchell TK, Dean RA. Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea Fungal Genetics and Biology. 43: 605-617. PMID 16731015 DOI: 10.1016/J.Fgb.2006.03.005 |
0.57 |
|
| 2006 |
Joobeur T, Gusmini G, Zhang X, Levi A, Xu Y, Wehner TC, Oliver M, Dean RA. Construction of a watermelon BAC library and identification of SSRs anchored to melon or Arabidopsis genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 1553-62. PMID 16604337 DOI: 10.1007/S00122-006-0258-6 |
0.41 |
|
| 2006 |
Thon MR, Pan H, Diener S, Papalas J, Taro A, Mitchell TK, Dean RA. The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biology. 7: R16. PMID 16507177 DOI: 10.1186/Gb-2006-7-2-R16 |
0.79 |
|
| 2006 |
Altunay M, Brown DE, Byrd GT, Dean RA. Collaboration policies: Access control management in decentralized heterogeneous workflows Journal of Software. 1: 11-22. DOI: 10.4304/Jsw.1.1.11-22 |
0.739 |
|
| 2006 |
Payne GA, Nierman WC, Wortman JR, Pritchard BL, Brown D, Dean RA, Bhatnagar D, Cleveland TE, Machida M, Yu J. Whole genome comparison of Aspergillus flavus and A. oryzae Medical Mycology. 44: 9-11. DOI: 10.1080/13693780600835716 |
0.442 |
|
| 2005 |
Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/Pp.105.066134 |
0.413 |
|
| 2005 |
Dean R, Mitchell T, Donofrio N, Jeong JS, Powell A. Fungal biology reaps the benefit of genomics. Genome Biology. 6: 336. PMID 16086860 DOI: 10.1186/Gb-2005-6-8-336 |
0.574 |
|
| 2005 |
Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA. Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system. Bmc Bioinformatics. 6: 147. PMID 15958161 DOI: 10.1186/1471-2105-6-147 |
0.767 |
|
| 2005 |
Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/Pp.104.055624 |
0.454 |
|
| 2005 |
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449 |
0.492 |
|
| 2005 |
Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, ... ... Dean RA, et al. 'PACLIMS': a component LIM system for high-throughput functional genomic analysis. Bmc Bioinformatics. 6: 94. PMID 15826298 DOI: 10.1186/1471-2105-6-94 |
0.799 |
|
| 2005 |
Kulkarni RD, Thon MR, Pan H, Dean RA. Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biology. 6: R24. PMID 15774025 DOI: 10.1186/Gb-2005-6-3-R24 |
0.372 |
|
| 2005 |
Altunay M, Brown D, Byrd G, Dean RA. Evaluation of mutual trust during matchmaking Proceedings - Fifth Ieee International Conference On Peer-to-Peer Computing, P2p 2005. 2005: 133-140. DOI: 10.1109/P2P.2005.9 |
0.721 |
|
| 2005 |
Altunay M, Brown D, Byrd G, Dean R. Trust-based secure workflow path construction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3826: 382-395. DOI: 10.1007/11596141_29 |
0.717 |
|
| 2004 |
Ebbole DJ, Jin Y, Thon M, Pan H, Bhattarai E, Thomas T, Dean R. Gene discovery and gene expression in the rice blast fungus, Magnaporthe grisea: analysis of expressed sequence tags. Molecular Plant-Microbe Interactions : Mpmi. 17: 1337-47. PMID 15597739 DOI: 10.1094/Mpmi.2004.17.12.1337 |
0.428 |
|
| 2004 |
Diener SE, Chellappan MK, Mitchell TK, Dunn-Coleman N, Ward M, Dean RA. Insight into Trichoderma reesei's genome content, organization and evolution revealed through BAC library characterization. Fungal Genetics and Biology : Fg & B. 41: 1077-87. PMID 15531212 DOI: 10.1016/J.Fgb.2004.08.007 |
0.81 |
|
| 2004 |
Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/J.Fgb.2004.02.003 |
0.413 |
|
| 2004 |
Joobeur T, King JJ, Nolin SJ, Thomas CE, Dean RA. The Fusarium wilt resistance locus Fom-2 of melon contains a single resistance gene with complex features. The Plant Journal : For Cell and Molecular Biology. 39: 283-97. PMID 15255859 DOI: 10.1111/J.1365-313X.2004.02134.X |
0.364 |
|
| 2004 |
Gowda M, Jantasuriyarat C, Dean RA, Wang GL. Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis. Plant Physiology. 134: 890-7. PMID 15020752 DOI: 10.1104/Pp.103.034496 |
0.34 |
|
| 2004 |
Diener SE, Dunn-Coleman N, Foreman P, Houfek TD, Teunissen PJ, van Solingen P, Dankmeyer L, Mitchell TK, Ward M, Dean RA. Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei. Fems Microbiology Letters. 230: 275-82. PMID 14757250 DOI: 10.1016/S0378-1097(03)00916-9 |
0.795 |
|
| 2004 |
Asiegbu FO, Choi W, Jeong JS, Dean RA. Cloning, sequencing and functional analysis of Magnaporthe grisea MVP1 gene, a hex-1 homolog encoding a putative 'woronin body' protein. Fems Microbiology Letters. 230: 85-90. PMID 14734169 DOI: 10.1016/S0378-1097(03)00858-9 |
0.638 |
|
| 2004 |
Diener S, Dunn-Coleman N, Foreman P, Houfek T, Teunissen P, Solingen P, Dankmeyer L, Mitchell T, Ward M, Dean R. Corrigendum to âCharacterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags fromTrichoderma reeseiâ [FEMS Microbiol. Lett. 230 (2004) 275â282] Fems Microbiology Letters. 235: 209-209. DOI: 10.1111/J.1574-6968.2004.Tb09588.X |
0.774 |
|
| 2003 |
Takano Y, Choi W, Mitchell TK, Okuno T, Dean RA. Large scale parallel analysis of gene expression during infection-related morphogenesis of Magnaporthe grisea. Molecular Plant Pathology. 4: 337-46. PMID 20569394 DOI: 10.1046/J.1364-3703.2003.00182.X |
0.342 |
|
| 2003 |
Kulkarni RD, Dean RA. Identification of proteins that interact with two regulators of appressorium development, adenylate cyclase and cAMP-dependent protein kinase A, in the rice blast fungus Magnaporthe grisea. Molecular Genetics and Genomics : Mgg. 270: 497-508. PMID 14648199 DOI: 10.1007/S00438-003-0935-Y |
0.341 |
|
| 2003 |
Asiegbu FO, Choi W, Li G, Nahalkova J, Dean RA. Isolation of a novel antimicrobial peptide gene (Sp-AMP) homologue from Pinus sylvestris (Scots pine) following infection with the root rot fungus Heterobasidion annosum. Fems Microbiology Letters. 228: 27-31. PMID 14612232 DOI: 10.1016/S0378-1097(03)00697-9 |
0.305 |
|
| 2003 |
Foreman PK, Brown D, Dankmeyer L, Dean R, Diener S, Dunn-Coleman NS, Goedegebuur F, Houfek TD, England GJ, Kelley AS, Meerman HJ, Mitchell T, Mitchinson C, Olivares HA, Teunissen PJ, et al. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. The Journal of Biological Chemistry. 278: 31988-97. PMID 12788920 DOI: 10.1074/Jbc.M304750200 |
0.781 |
|
| 2003 |
Kulkarni RD, Kelkar HS, Dean RA. An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins. Trends in Biochemical Sciences. 28: 118-21. PMID 12633989 DOI: 10.1016/S0968-0004(03)00025-2 |
0.335 |
|
| 2003 |
K. Mitchell T, Thon MR, Jeong J, Brown D, Deng J, Dean RA. The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens New Phytologist. 159: 53-61. DOI: 10.1046/J.1469-8137.2003.00787.X |
0.61 |
|
| 2002 |
Xue C, Park G, Choi W, Zheng L, Dean RA, Xu JR. Two novel fungal virulence genes specifically expressed in appressoria of the rice blast fungus. The Plant Cell. 14: 2107-19. PMID 12215509 DOI: 10.1105/Tpc.003426 |
0.341 |
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| 2002 |
Wang YH, Choi W, Thomas CE, Dean RA. Cloning of disease-resistance homologues in end sequences of BAC clones linked to Fom-2, a gene conferring resistance to Fusarium wilt in melon (Cucumis melo L.). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 473-80. PMID 12033615 DOI: 10.1139/G02-005 |
0.379 |
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| 2002 |
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, ... ... Dean R, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (New York, N.Y.). 296: 92-100. PMID 11935018 DOI: 10.1126/science.1068275 |
0.366 |
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| 2002 |
Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Dean RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485 |
0.408 |
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| 2002 |
Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272 DOI: 10.1093/Nar/30.1.121 |
0.439 |
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| 2001 |
Rauyaree P, Choi W, Fang E, Blackmon B, Dean RA. Genes expressed during early stages of rice infection with the rice blast fungus Magnaporthe grisea. Molecular Plant Pathology. 2: 347-54. PMID 20573024 DOI: 10.1046/J.1464-6722.2001.00085.X |
0.413 |
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| 2001 |
Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA. A framework for sequencing the rice genome. Novartis Foundation Symposium. 236: 13-24; discussion 24. PMID 11387975 DOI: 10.1002/9780470515778.Ch3 |
0.45 |
|
| 2001 |
Luo M, Wang YH, Frisch D, Joobeur T, Wing RA, Dean RA. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2) Genome. 44: 154-162. PMID 11341724 DOI: 10.1139/Gen-44-2-154 |
0.355 |
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| 2000 |
Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA. Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Research. 10: 982-90. PMID 10899147 DOI: 10.1101/Gr.10.7.982 |
0.459 |
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| 1999 |
Tomkins JP, Miller-Smith H, Sasinowski M, Choi S, Sasinowska H, Verce MF, Freedman DL, Dean RA, Wing RA. Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs Microbial and Comparative Genomics. 4: 203-217. PMID 10587947 DOI: 10.1089/Omi.1.1999.4.203 |
0.429 |
|
| 1999 |
Zhu H, Blackmon BP, Sasinowski M, Dean RA. Physical map and organization of chromosome 7 in the rice blast fungus, Magnaporthe grisea. Genome Research. 9: 739-750. DOI: 10.1101/Gr.9.8.739 |
0.314 |
|
| 1998 |
Choi W, Dean RA. The adenylate cyclase gene MAC1 of Magnaporthe grisea controls appressorium formation and other aspects of growth and development. The Plant Cell. 9: 1973-83. PMID 9401122 DOI: 10.1105/Tpc.9.11.1973 |
0.38 |
|
| 1997 |
Zhu H, Choi S, Johnston AK, Wing RA, Dean RA. A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning Fungal Genetics and Biology. 21: 337-347. PMID 9290247 DOI: 10.1006/Fgbi.1997.0996 |
0.415 |
|
| 1996 |
Mitchell TK, Dean RA. The cAMP-dependent protein kinase catalytic subunit is required for appressorium formation and pathogenesis by the rice blast pathogen Magnaporthe grisea. The Plant Cell. 7: 1869-78. PMID 8535140 DOI: 10.1105/Tpc.7.11.1869 |
0.408 |
|
| 1995 |
Cary JW, Brown R, Cleveland TE, Whitehead M, Dean RA. Cloning and characterization of a novel polygalacturonase-encoding gene from Aspergillus parasiticus Gene. 153: 129-133. PMID 7883176 DOI: 10.1016/0378-1119(94)00749-I |
0.393 |
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| 1995 |
Ho MC, Whitehead MP, Cleveland TE, Dean RA. Sequence analysis of the Aspergillus nidulans pectate lyase pelA gene and evidence for binding of promoter regions to CREA, a regulator of carbon catabolite repression. Current Genetics. 27: 142-9. PMID 7788717 DOI: 10.1007/Bf00313428 |
0.36 |
|
| 1995 |
Whitehead MP, Shieh MT, Cleveland TE, Cary JW, Dean RA. Isolation and characterization of polygalacturonase genes (pecA and pecB) from Aspergillus flavus Applied and Environmental Microbiology. 61: 3316-3322. PMID 7574642 DOI: 10.1128/Aem.61.9.3316-3322.1995 |
0.35 |
|
| 1993 |
Lee Y, Dean RA. Stage-Specific Gene Expression during Appressorium Formation of Magnaporthe grisea Experimental Mycology. 17: 215-222. DOI: 10.1006/Emyc.1993.1020 |
0.387 |
|
| 1991 |
Stringer MA, Dean RA, Sewall TC, Timberlake WE. Rodletless, a new Aspergillus developmental mutant induced by directed gene inactivation. Genes & Development. 5: 1161-71. PMID 2065971 DOI: 10.1101/Gad.5.7.1161 |
0.305 |
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