Blake C. Meyers - Publications

2002-2015 Plant and Soil Sciences and Delaware Biotechnology Institute University of Delaware, Newark, DE, United States 
 2016- Donald Danforth Plant Science Center 
Plant Biology, RNA biology

192 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Pokhrel S, Huang K, Meyers BC. Conserved and non-conserved triggers of 24-nt reproductive phasiRNAs in eudicots. The Plant Journal : For Cell and Molecular Biology. PMID 34160111 DOI: 10.1111/tpj.15382  1
2021 Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). G3 (Bethesda, Md.). PMID 33993297 DOI: 10.1093/g3journal/jkab140  0.48
2021 Chatterjee D, Wittmeyer K, Lee TF, Cui J, Yennawar NH, Yennawar HP, Meyers BC, Chopra S. Maize unstable factor for orange1 is essential for endosperm development and carbohydrate accumulation. Plant Physiology. PMID 33905500 DOI: 10.1093/plphys/kiab183  1
2021 Patel P, Mathioni SM, Hammond R, Harkess AE, Kakrana A, Arikit S, Dusia A, Meyers BC. Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants. Plant Physiology. PMID 33793935 DOI: 10.1093/plphys/kiab001  1
2021 Yadava P, Tamim S, Zhang H, Teng C, Zhou X, Meyers BC, Walbot V. Transgenerational conditioned male fertility of HD-ZIP IV transcription factor mutant ocl4: impact on 21-nt phasiRNA accumulation in pre-meiotic maize anthers. Plant Reproduction. PMID 33689028 DOI: 10.1007/s00497-021-00406-3  0.6
2021 Chen C, Li J, Feng J, Liu B, Feng L, Yu X, Li G, Zhai J, Meyers BC, Xia R. sRNAanno-a database repository of uniformly annotated small RNAs in plants. Horticulture Research. 8: 45. PMID 33642576 DOI: 10.1038/s41438-021-00480-8  1
2021 Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. Correction: ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 19: e3001120. PMID 33571183 DOI: 10.1371/journal.pbio.3001120  0.96
2021 Lee YS, Maple R, Dürr J, Dawson A, Tamim S, Del Genio C, Papareddy R, Luo A, Lamb JC, Amantia S, Sylvester AW, Birchler JA, Meyers BC, Nodine MD, Rouster J, et al. A transposon surveillance mechanism that safeguards plant male fertility during stress. Nature Plants. PMID 33398155 DOI: 10.1038/s41477-020-00818-5  0.6
2020 Nakano M, McCormick K, Demirci C, Demirci F, Gurazada SGR, Ramachandruni D, Dusia A, Rothhaupt JA, Meyers BC. Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants1[OPEN]. Plant Physiology. 182: 136-146. PMID 33886987 DOI: 10.1104/pp.19.00957  0.48
2020 Escobar-Tovar L, Sierra J, Hernández-Muñoz A, McQuinn RP, Mathioni S, Cordoba E, Colas des Francs-Small C, Meyers BC, Pogson B, León P. Deconvoluting apocarotenoid-mediated retrograde signaling networks regulating plastid translation and leaf development. The Plant Journal : For Cell and Molecular Biology. PMID 33340183 DOI: 10.1111/tpj.15134  0.36
2020 Tian P, Zhang X, Xia R, Liu Y, Wang M, Li B, Liu T, Shi J, Wing RA, Meyers BC, Chen M. Evolution and diversification of reproductive phased small interfering RNAs in Oryza species. The New Phytologist. PMID 33111313 DOI: 10.1111/nph.17035  0.52
2020 Jia J, Ji R, Li Z, Yu Y, Nakano M, Long Y, Feng L, Qin C, Lu D, Zhan J, Xia R, Meyers BC, Liu B, Zhai J. Soybean Dicer-Like 2 Regulates Seed Coat Color via Production of Primary 22-nt Small Interfering RNAs from Long Inverted Repeats. The Plant Cell. PMID 33077493 DOI: 10.1105/tpc.20.00562  0.96
2020 Ding B, Xia R, Lin Q, Gurung V, Sagawa JM, Stanley LE, Strobel M, Diggle PK, Meyers BC, Yuan YW. Developmental Genetics of Corolla Tube Formation: Role of the tasiRNA-ARF Pathway and a Conceptual Model. The Plant Cell. PMID 32917737 DOI: 10.1105/Tpc.18.00471  0.52
2020 Liu Y, Teng C, Xia R, Meyers BC. Phased Secondary Small Interfering RNAs (phasiRNAs) in Plants: Their Biogenesis, Genic Sources, and Roles in Stress Responses, Development, and Reproduction. The Plant Cell. PMID 32817252 DOI: 10.1105/Tpc.20.00335  0.6
2020 Huang K, Demirci F, Batish M, Treible W, Meyers BC, Caplan JL. Quantitative, super-resolution localization of small RNAs with sRNA-PAINT. Nucleic Acids Research. PMID 32716042 DOI: 10.1017/S1431927620013549  1
2020 Huang K, Batish M, Teng C, Harkess A, Meyers BC, Caplan JL. Quantitative Fluorescence In Situ Hybridization Detection of Plant mRNAs with Single-Molecule Resolution. Methods in Molecular Biology (Clifton, N.J.). 2166: 23-33. PMID 32710401 DOI: 10.1007/978-1-0716-0712-1_2  1
2020 Teng C, Zhang H, Hammond R, Huang K, Meyers BC, Walbot V. Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize. Nature Communications. 11: 2912. PMID 32518237 DOI: 10.1038/S41467-020-16634-6  1
2020 Harkess A, Huang K, van der Hulst R, Tissen B, Caplan JL, Koppula A, Batish M, Meyers BC, Leebens-Mack J. Sex Determination by Two Y-linked Genes in Garden Asparagus. The Plant Cell. PMID 32220850 DOI: 10.1105/Tpc.19.00859  1
2020 Debladis E, Lee TF, Huang YJ, Lu JH, Mathioni SM, Carpentier MC, Llauro C, Pierron D, Mieulet D, Guiderdoni E, Chen PY, Meyers BC, Panaud O, Lasserre E. Construction and characterization of a knock-down RNA interference line of in rice ( ssp cv Nipponbare). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190338. PMID 32075556 DOI: 10.1098/Rstb.2019.0338  0.76
2019 Feng L, Zhang F, Zhang H, Zhao Y, Meyers BC, Zhai J. An online database for exploring over 2,000 Arabidopsis small RNA libraries. Plant Physiology. PMID 31843802 DOI: 10.1104/Pp.19.00959  0.96
2019 Bi H, Fei Q, Li R, Liu B, Xia R, Char SN, Meyers BC, Yang B. Disruption of miRNA Sequences by TALENs and CRISPR/Cas9 Induces Varied Lengths of miRNA Production. Plant Biotechnology Journal. PMID 31821678 DOI: 10.1111/Pbi.13315  1
2019 Nakano M, McCormick K, Demirci C, Demirci F, Gurazada SGR, Ramachandruni D, Dusia A, Rothhaupt JA, Meyers BC. Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants. Plant Physiology. PMID 31690707 DOI: 10.1104/Pp.19.00957  0.48
2019 Juárez-González VT, López-Ruiz BA, Baldrich P, Luján-Soto E, Meyers BC, Dinkova TD. The explant developmental stage profoundly impacts small RNA-mediated regulation at the dedifferentiation step of maize somatic embryogenesis. Scientific Reports. 9: 14511. PMID 31601893 DOI: 10.1038/S41598-019-50962-Y  1
2019 Crisp PA, Hammond R, Zhou P, Vaillancourt B, Lipzen AM, Daum C, Barry KW, de Leon N, Buell CR, Kaeppler SM, Meyers BC, Hirsch C, Springer NM. Variation and inheritance of small RNAs in maize inbreds and F1 hybrids. Plant Physiology. PMID 31575624 DOI: 10.1104/Pp.19.00817  0.48
2019 Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Correction to: small RNA discovery in the interaction between barley and the powdery mildew pathogen. Bmc Genomics. 20: 697. PMID 31484492 DOI: 10.1186/S12864-019-6012-7  0.36
2019 Baldrich P, Meyers BC. Bacteria send messages to colonize plant roots. Science (New York, N.Y.). 365: 868-869. PMID 31467211 DOI: 10.1126/Science.Aay7101  1
2019 Ji L, Mathioni S, Johnson S, Tucker D, Bewick AJ, Kim KD, Daron J, Slotkin RK, Jackson SA, Parrott WA, Meyers BC, Schmitz R. Genome-wide reinforcement of DNA methylation occurs during somatic embryogenesis in soybean. The Plant Cell. PMID 31439802 DOI: 10.1105/Tpc.19.00255  0.36
2019 Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Small RNA discovery in the interaction between barley and the powdery mildew pathogen. Bmc Genomics. 20: 610. PMID 31345162 DOI: 10.1186/S12864-019-5947-Z  0.36
2019 Trolet A, Baldrich P, Criqui MC, Dubois M, Clavel M, Meyers BC, Genschik P. Cell Cycle-dependent Regulation and Function of ARGONAUTE1 in Plants. The Plant Cell. PMID 31189739 DOI: 10.1105/Tpc.19.00069  1
2019 Fourounjian P, Tang J, Tanyolac B, Feng Y, Gelfand B, Kakrana A, Tu M, Wakim C, Meyers BC, Ma J, Messing J. Post-transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli. The Plant Journal : For Cell and Molecular Biology. PMID 30801806 DOI: 10.1111/Tpj.14294  0.76
2019 Xia R, Chen C, Pokhrel S, Ma W, Huang K, Patel P, Wang F, Xu J, Liu Z, Li J, Meyers BC. 24-nt reproductive phasiRNAs are broadly present in angiosperms. Nature Communications. 10: 627. PMID 30733503 DOI: 10.1038/S41467-019-08543-0  1
2019 Baldrich P, Rutter BD, Zand Karimi H, Podicheti R, Meyers BC, Innes RW. Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10 to 17 Nucleotide "Tiny" RNAs. The Plant Cell. PMID 30705133 DOI: 10.1105/Tpc.18.00872  1
2018 Liu H, Soyars CL, Li J, Fei Q, He G, Peterson BA, Meyers BC, Nimchuk ZL, Wang X. CRISPR/Cas9-mediated resistance to cauliflower mosaic virus. Plant Direct. 2: e00047. PMID 31245713 DOI: 10.1002/pld3.47  0.52
2018 Huang K, Baldrich P, Meyers BC, Caplan JL. sRNA-FISH: versatile fluorescent in situ detection of small RNAs in plants. The Plant Journal : For Cell and Molecular Biology. PMID 30577085 DOI: 10.1111/Tpj.14210  1
2018 Wittmeyer K, Cui J, Chatterjee D, Lee TF, Tan Q, Xue W, Jiao Y, Wang PH, Gaffoor I, Ware D, Meyers BC, Chopra S. The dominant and poor penetrant phenotypes of the maize mutation Unstable factor for orange1 are caused by DNA methylation changes at a linked transposon. The Plant Cell. PMID 30563848 DOI: 10.1105/Tpc.18.00546  0.36
2018 Moro B, Chorostecki U, Arikit S, Suarez IP, Höbartner C, Rasia RM, Meyers BC, Palatnik JF. Efficiency and precision of microRNA biogenesis modes in plants. Nucleic Acids Research. PMID 30289546 DOI: 10.1093/Nar/Gky853  0.76
2018 Raman V, Meyers BC, Dean RA, Donofrio NM. Characterizing Small RNAs in Filamentous Fungi Using the Rice Blast Fungus, Magnaporthe oryzae, as an Example. Methods in Molecular Biology (Clifton, N.J.). 1848: 53-66. PMID 30182228 DOI: 10.1007/978-1-4939-8724-5_5  0.2
2018 Patel P, Mathioni S, Kakrana A, Shatkay H, Meyers BC. Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs. The New Phytologist. PMID 30020552 DOI: 10.1111/Nph.15349  0.76
2018 Fei Q, Yu Y, Liu L, Zhang Y, Baldrich P, Dai Q, Chen X, Meyers BC. Biogenesis of a 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30012624 DOI: 10.1073/Pnas.1807403115  1
2018 Kakrana A, Mathioni SM, Huang K, Hammond R, Vandivier L, Patel P, Arikit S, Shevchenko O, Harkess AE, Kingham B, Gregory BD, Leebens-Mack JH, Meyers BC. Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots. Genome Research. PMID 30002159 DOI: 10.1101/Gr.228163.117  1
2018 Tamim S, Cai Z, Mathioni SM, Zhai J, Teng C, Zhang Q, Meyers BC. Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses. The New Phytologist. PMID 29708601 DOI: 10.1111/Nph.15181  0.96
2018 He J, Xu M, Willmann MR, McCormick K, Hu T, Yang L, Starker CG, Voytas DF, Meyers BC, Poethig RS. Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana. Plos Genetics. 14: e1007337. PMID 29672610 DOI: 10.1371/Journal.Pgen.1007337  0.48
2018 Van Der Linde K, Timofejeva L, Egger RL, Ilau B, Hammond R, Teng C, Meyers BC, Doehlemann G, Walbot V. Pathogen Trojan horse delivers bioactive host protein to alter maize (Zea mays) anther cell behavior in situ. The Plant Cell. PMID 29449414 DOI: 10.1105/Tpc.17.00238  0.6
2018 Baldrich P, Beric A, Meyers BC. Despacito: the slow evolutionary changes in plant microRNAs. Current Opinion in Plant Biology. 42: 16-22. PMID 29448158 DOI: 10.1016/J.Pbi.2018.01.007  1
2017 Mathioni SM, Kakrana A, Meyers BC. Characterization of Plant Small RNAs by Next Generation Sequencing. Current Protocols in Plant Biology. 2: 39-63. PMID 31725976 DOI: 10.1002/cppb.20043  0.76
2017 Ma W, Chen C, Liu Y, Zeng M, Meyers BC, Li J, Xia R. Coupling of microRNA-directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA-mediated gene silencing. The New Phytologist. PMID 29218722 DOI: 10.1111/Nph.14934  1
2017 Wang PH, Wittmeyer KT, Lee TF, Meyers BC, Chopra S. Overlapping RdDM and non-RdDM mechanisms work together to maintain somatic repression of a paramutagenic epiallele of maize pericarp color1. Plos One. 12: e0187157. PMID 29112965 DOI: 10.1371/Journal.Pone.0187157  1
2017 Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, ... ... Meyers BC, et al. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications. 8: 1279. PMID 29093472 DOI: 10.1038/S41467-017-01064-8  1
2017 Sidorenko LV, Lee TF, Woosley A, Moskal WA, Bevan SA, Merlo PAO, Walsh TA, Wang X, Weaver S, Glancy TP, Wang P, Yang X, Sriram S, Meyers BC. GC-rich coding sequences reduce transposon-like, small RNA-mediated transgene silencing. Nature Plants. PMID 29085072 DOI: 10.1038/S41477-017-0040-6  1
2017 Huang K, Doyle F, Wurz ZE, Tenenbaum SA, Hammond RK, Caplan JL, Meyers BC. FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs. Nucleic Acids Research. PMID 28586459 DOI: 10.1093/Nar/Gkx504  1
2017 Raman V, Simon SA, Demirci F, Nakano M, Meyers BC, Donofrio NM. Small RNA Functions Are Required for Growth and Development of Magnaporthe oryzae. Molecular Plant-Microbe Interactions : Mpmi. MPMI11160236R. PMID 28504560 DOI: 10.1094/Mpmi-11-16-0236-R  1
2017 Xia R, Xu J, Meyers BC. The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants. The Plant Cell. PMID 28442597 DOI: 10.1105/Tpc.17.00185  1
2017 Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, ... ... Meyers BC, et al. Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Nature Communications. 8: 14953. PMID 28401891 DOI: 10.1038/Ncomms14953  1
2017 Michelmore RW, Coaker G, Bart R, Beattie GA, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-van den Akker S, Gassmann W, Greenberg J, Harrison R, He P, ... ... Meyers B, et al. Foundational and translational research opportunities to improve plant health. Molecular Plant-Microbe Interactions : Mpmi. PMID 28398839 DOI: 10.1094/Mpmi-01-17-0010-Cr  0.84
2017 Yu Y, Ji L, Le BH, Zhai J, Chen J, Luscher E, Gao L, Liu C, Cao X, Mo B, Ma J, Meyers BC, Chen X. ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. Plos Biology. 15: e2001272. PMID 28231321 DOI: 10.1371/Journal.Pbio.2001272  0.96
2016 Fan Y, Yang J, Mathioni SM, Yu J, Shen J, Yang X, Wang L, Zhang Q, Cai Z, Xu C, Li X, Xiao J, Meyers BC, Zhang Q. PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 27965387 DOI: 10.1073/Pnas.1619159114  0.76
2016 Nan GL, Zhai J, Arikit S, Morrow D, Fernandes J, Mai L, Nguyen N, Meyers BC, Walbot V. MS23, a master basic helix-loop-helix factor, regulates the specification and development of tapetum in maize. Development (Cambridge, England). PMID 27913638 DOI: 10.1242/Dev.140673  1
2016 Fei Q, Yang L, Liang W, Zhang D, Meyers BC. Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways. Journal of Experimental Botany. PMID 27702997 DOI: 10.1093/Jxb/Erw361  1
2016 Zhang Y, Xia R, Kuang H, Meyers BC. The Diversification of Plant NBS-LRR Defense Genes Directs the Evolution of MicroRNAs that Target Them. Molecular Biology and Evolution. PMID 27512116 DOI: 10.1093/Molbev/Msw154  0.52
2016 Char SN, Neelakandan AK, Nahampun H, Frame B, Main M, Spalding MH, Becraft PW, Meyers BC, Walbot V, Wang K, Yang B. An Agrobacterium-delivered CRISPR/Cas9 system for high-frequency targeted mutagenesis in maize. Plant Biotechnology Journal. PMID 27510362 DOI: 10.1111/Pbi.12611  0.36
2016 Yang L, Qian X, Chen M, Fei Q, Meyers BC, Liang W, Zhang D. Regulatory Role of OsTDL1A-MSP1 Signaling in Specifying Anther Cell Identity in Rice. Plant Physiology. PMID 27208278 DOI: 10.1104/Pp.16.00016  0.96
2016 Wendel JF, Jackson SA, Meyers BC, Wing RA. Evolution of plant genome architecture. Genome Biology. 17: 37. PMID 26926526 DOI: 10.1186/S13059-016-0908-1  0.96
2016 Fei Q, Zhang Y, Xia R, Meyers BC. Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses. Molecular Plant-Microbe Interactions : Mpmi. MPMI09150212FI. PMID 26867095 DOI: 10.1094/Mpmi-09-15-0212-Fi  1
2016 Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN. High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs. Bmc Genomics. 17: 85. PMID 26822616 DOI: 10.1186/S12864-016-2391-1  0.96
2015 Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of MicroRNAs, PhasiRNAs, and NB-LRR Genes in Response to a Plant Pathogen: Insights from Analyses of a Set of Soybean Rps Gene Near-Isogenic Lines. The Plant Genome. 8: eplantgenome2014.09.. PMID 33228285 DOI: 10.3835/plantgenome2014.09.0044  0.96
2015 Curtin SJ, Michno JM, Campbell BW, Gil-Humanes J, Mathioni SM, Hammond R, Gutierrez-Gonzalez JJ, Donohue RC, Kantar MB, Eamens AL, Meyers BC, Voytas DF, Stupar RM. microRNA Maturation and microRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean dicer-like1 Double Mutants. G3 (Bethesda, Md.). PMID 26681515 DOI: 10.1534/G3.115.022137  0.96
2015 Patel P, Ramachandruni SD, Kakrana A, Nakano M, Meyers BC. miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis. Bioinformatics (Oxford, England). PMID 26454275 DOI: 10.1093/Bioinformatics/Btv583  0.76
2015 Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032  0.96
2015 Xia R, Xu J, Arikit S, Meyers BC. Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants. Molecular Biology and Evolution. PMID 26318183 DOI: 10.1093/Molbev/Msv164  0.96
2015 Zhang H, Xia R, Meyers BC, Walbot V. Evolution, functions, and mysteries of plant ARGONAUTE proteins. Current Opinion in Plant Biology. 27: 84-90. PMID 26190741 DOI: 10.1016/J.Pbi.2015.06.011  0.52
2015 Xia R, Ye S, Liu Z, Meyers B, Liu Z. Novel and recently evolved miRNA clusters regulate expansive F-box gene networks through phasiRNAs in wild diploid strawberry. Plant Physiology. PMID 26143249 DOI: 10.1104/Pp.15.00253  0.96
2015 Fei Q, Li P, Teng C, Meyers BC. Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances. The Plant Journal : For Cell and Molecular Biology. PMID 26042408 DOI: 10.1111/Tpj.12900  0.96
2015 Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Libault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, et al. Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Plant Biotechnology Journal. PMID 25973713 DOI: 10.1111/Pbi.12387  0.96
2015 Tu B, Liu L, Xu C, Zhai J, Li S, Lopez MA, Zhao Y, Yu Y, Ramachandran V, Ren G, Yu B, Li S, Meyers BC, Mo B, Chen X. Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. Plos Genetics. 11: e1005119. PMID 25928405 DOI: 10.1371/Journal.Pgen.1005119  0.96
2015 El Baidouri M, Kim KD, Abernathy B, Arikit S, Maumus F, Panaud O, Meyers BC, Jackson SA. A new approach for annotation of transposable elements using small RNA mapping. Nucleic Acids Research. PMID 25813049 DOI: 10.1093/Nar/Gkv257  0.96
2015 Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation. The New Phytologist. 207: 748-59. PMID 25783944 DOI: 10.1111/Nph.13365  0.96
2015 Zhai J, Zhang H, Arikit S, Huang K, Nan GL, Walbot V, Meyers BC. Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. Proceedings of the National Academy of Sciences of the United States of America. 112: 3146-51. PMID 25713378 DOI: 10.1073/Pnas.1418918112  0.96
2015 Cantó-Pastor A, Mollá-Morales A, Ernst E, Dahl W, Zhai J, Yan Y, Meyers BC, Shanklin J, Martienssen R. Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biology (Stuttgart, Germany). 17: 59-65. PMID 24989135 DOI: 10.1111/Plb.12215  0.96
2015 Zhao M, Cai C, Zhai J, Lin F, Li L, Shreve J, Thimmapuram J, Hughes TJ, Meyers BC, Ma J. Coordination of microRNAs, phasiRNAs, and NB-LRR genes in response to a plant pathogen: Insights from analyses of a set of soybean rps gene near-isogenic lines Plant Genome. 8. DOI: 10.3835/Plantgenome2014.09.0044  0.96
2015 Zhang H, Xia R, Meyers BC, Walbot V. Evolution, functions, and mysteries of plant ARGONAUTE proteins Current Opinion in Plant Biology. 27: 84-90. DOI: 10.1016/j.pbi.2015.06.011  0.96
2014 Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. The Plant Cell. 26: 4584-601. PMID 25465409 DOI: 10.1105/Tpc.114.131847  0.96
2014 Thompson BE, Basham C, Hammond R, Ding Q, Kakrana A, Lee TF, Simon SA, Meeley R, Meyers BC, Hake S. The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize. The Plant Cell. 26: 4702-17. PMID 25465405 DOI: 10.1105/Tpc.114.132670  0.96
2014 Kakrana A, Hammond R, Patel P, Nakano M, Meyers BC. sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software. Nucleic Acids Research. 42: e139. PMID 25120269 DOI: 10.1093/Nar/Gku693  0.96
2014 Wong J, Gao L, Yang Y, Zhai J, Arikit S, Yu Y, Duan S, Chan V, Xiong Q, Yan J, Li S, Liu R, Wang Y, Tang G, Meyers BC, et al. Roles of small RNAs in soybean defense against Phytophthora sojae infection. The Plant Journal : For Cell and Molecular Biology. 79: 928-40. PMID 24944042 DOI: 10.1111/Tpj.12590  0.96
2014 Sasaki T, Lee TF, Liao WW, Naumann U, Liao JL, Eun C, Huang YY, Fu JL, Chen PY, Meyers BC, Matzke AJ, Matzke M. Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 79: 127-38. PMID 24798377 DOI: 10.1111/Tpj.12545  0.96
2014 Gregory BD, Meyers BC. Genomic approaches for studying transcriptional and post-transcriptional processes. Methods (San Diego, Calif.). 67: 1-2. PMID 24766879 DOI: 10.1016/J.Ymeth.2014.03.025  0.96
2014 Chávez Montes RA, de Fátima Rosas-Cárdenas F, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, Marsch-Martínez N, Meyers BC, Green PJ, de Folter S. Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs. Nature Communications. 5: 3722. PMID 24759728 DOI: 10.1038/Ncomms4722  0.96
2014 Venu RC, Ma J, Jia Y, Liu G, Jia MH, Nobuta K, Sreerekha MV, Moldenhauer K, McClung AM, Meyers BC, Wang GL. Identification of candidate genes associated with positive and negative heterosis in rice. Plos One. 9: e95178. PMID 24743656 DOI: 10.1371/Journal.Pone.0095178  0.96
2014 Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Reprint of: construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 67: 36-44. PMID 24731939 DOI: 10.1016/j.ymeth.2014.04.001  0.96
2014 Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature. 508: 411-5. PMID 24670663 DOI: 10.1038/Nature13069  0.96
2014 Wei L, Gu L, Song X, Cui X, Lu Z, Zhou M, Wang L, Hu F, Zhai J, Meyers BC, Cao X. Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice. Proceedings of the National Academy of Sciences of the United States of America. 111: 3877-82. PMID 24554078 DOI: 10.1073/Pnas.1318131111  0.96
2014 Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC. Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing. Methods (San Diego, Calif.). 67: 84-90. PMID 23810899 DOI: 10.1016/J.Ymeth.2013.06.025  0.96
2013 Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ. Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biology. 14: R145. PMID 24367943 DOI: 10.1186/Gb-2013-14-12-R145  0.96
2013 Venkataramanan KP, Jones SW, McCormick KP, Kunjeti SG, Ralston MT, Meyers BC, Papoutsakis ET. The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum. Bmc Genomics. 14: 849. PMID 24299206 DOI: 10.1186/1471-2164-14-849  0.96
2013 Gong L, Kakrana A, Arikit S, Meyers BC, Wendel JF. Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. Genome Biology and Evolution. 5: 2449-59. PMID 24281048 DOI: 10.1093/Gbe/Evt196  0.96
2013 Schapire AL, Bologna NG, Moro B, Zhai J, Meyers BC, Palatnik JF. Construction of Specific Parallel Amplification of RNA Ends (SPARE) libraries for the systematic identification of plant microRNA processing intermediates. Methods (San Diego, Calif.). 64: 283-91. PMID 24018204 DOI: 10.1016/J.Ymeth.2013.08.032  0.96
2013 Bologna NG, Schapire AL, Zhai J, Chorostecki U, Boisbouvier J, Meyers BC, Palatnik JF. Multiple RNA recognition patterns during microRNA biogenesis in plants. Genome Research. 23: 1675-89. PMID 23990609 DOI: 10.1101/Gr.153387.112  0.96
2013 Fei Q, Xia R, Meyers BC. Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. The Plant Cell. 25: 2400-15. PMID 23881411 DOI: 10.1105/Tpc.113.114652  0.96
2013 Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC. Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. The Plant Cell. 25: 2417-28. PMID 23839787 DOI: 10.1105/Tpc.113.114603  0.96
2013 Nandety RS, Caplan JL, Cavanaugh K, Perroud B, Wroblewski T, Michelmore RW, Meyers BC. The role of TIR-NBS and TIR-X proteins in plant basal defense responses. Plant Physiology. 162: 1459-72. PMID 23735504 DOI: 10.1104/Pp.113.219162  0.96
2013 Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ. Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiology. 162: 1225-45. PMID 23709668 DOI: 10.1104/Pp.113.219873  0.96
2013 Li P, Demirci F, Mahalingam G, Demirci C, Nakano M, Meyers BC. An integrated workflow for DNA methylation analysis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 40: 249-60. PMID 23706300 DOI: 10.1016/J.Jgg.2013.03.010  0.96
2013 Xia R, Meyers BC, Liu Z, Beers EP, Ye S, Liu Z. MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots. The Plant Cell. 25: 1555-72. PMID 23695981 DOI: 10.1105/Tpc.113.110957  1
2013 Raman V, Simon SA, Romag A, Demirci F, Mathioni SM, Zhai J, Meyers BC, Donofrio NM. Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. Bmc Genomics. 14: 326. PMID 23663523 DOI: 10.1186/1471-2164-14-326  0.96
2013 Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2: e00354. PMID 23539454 DOI: 10.7554/Elife.00354  0.56
2013 Arikit S, Zhai J, Meyers BC. Biogenesis and function of rice small RNAs from non-coding RNA precursors. Current Opinion in Plant Biology. 16: 170-9. PMID 23466255 DOI: 10.1016/J.Pbi.2013.01.006  0.96
2013 Venu RC, Sreerekha MV, Sheshu Madhav M, Nobuta K, Mohan KM, Chen S, Jia Y, Meyers BC, Wang GL. Deep transcriptome sequencing reveals the expression of key functional and regulatory genes involved in the abiotic stress signaling pathways in rice Journal of Plant Biology. 56: 216-231. DOI: 10.1007/S12374-013-0075-9  0.96
2012 Zhai J, Meyers BC. Deep sequencing from hen1 mutants to identify small RNA 3' modifications. Cold Spring Harbor Symposia On Quantitative Biology. 77: 213-9. PMID 23393108 DOI: 10.1101/Sqb.2013.77.014779  0.96
2012 Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences of the United States of America. 109: 12040-5. PMID 22778444 DOI: 10.1073/Pnas.1209297109  0.56
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  1
2012 Lee TF, Gurazada SG, Zhai J, Li S, Simon SA, Matzke MA, Chen X, Meyers BC. RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigenetics : Official Journal of the Dna Methylation Society. 7: 781-95. PMID 22647529 DOI: 10.4161/Epi.20290  0.96
2012 Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 8374-81. PMID 22592791 DOI: 10.1073/Pnas.1206638109  0.56
2012 Barbour JE, Liao IT, Stonaker JL, Lim JP, Lee CC, Parkinson SE, Kermicle J, Simon SA, Meyers BC, Williams-Carrier R, Barkan A, Hollick JB. required to maintain repression2 is a novel protein that facilitates locus-specific paramutation in maize. The Plant Cell. 24: 1761-75. PMID 22562610 DOI: 10.1105/Tpc.112.097618  0.96
2012 You W, Tyczewska A, Spencer M, Daxinger L, Schmid MW, Grossniklaus U, Simon SA, Meyers BC, Matzke AJ, Matzke M. Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. Bmc Plant Biology. 12: 51. PMID 22512782 DOI: 10.1186/1471-2229-12-51  0.96
2012 Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X. The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Current Biology : Cb. 22: 689-94. PMID 22464194 DOI: 10.1016/J.Cub.2012.02.051  0.96
2012 Sánchez-León N, Arteaga-Vázquez M, Alvarez-Mejía C, Mendiola-Soto J, Durán-Figueroa N, Rodríguez-Leal D, Rodríguez-Arévalo I, García-Campayo V, García-Aguilar M, Olmedo-Monfil V, Arteaga-Sánchez M, de la Vega OM, Nobuta K, Vemaraju K, Meyers BC, et al. Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing. Journal of Experimental Botany. 63: 3829-42. PMID 22442422 DOI: 10.1093/Jxb/Ers075  0.96
2012 Kunjeti SG, Evans TA, Marsh AG, Gregory NF, Kunjeti S, Meyers BC, Kalavacharla VS, Donofrio NM. RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew. Molecular Plant Pathology. 13: 454-66. PMID 22112294 DOI: 10.1111/J.1364-3703.2011.00761.X  0.96
2012 Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X. Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. The Plant Journal : For Cell and Molecular Biology. 69: 462-74. PMID 21973320 DOI: 10.1111/J.1365-313X.2011.04805.X  0.96
2012 Shen QJ, Yu D, Jeon JS, Piffanelli P, Abbruscato P, Guo ZJ, Zhang Y, Itoh T, Lee SS, Buell CR, Nagato Y, McCouch S, Yano M, Wang Gl, Jena KK, ... ... Meyers B, et al. Nomenclature report on rice WRKY's - conflict regarding gene names and its solution Rice. 5: 1-3. DOI: 10.1186/1939-8433-5-3  0.96
2011 Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ. Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. The Plant Cell. 23: 4185-207. PMID 22158467 DOI: 10.1105/Tpc.111.089045  0.96
2011 Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, ... Meyers BC, et al. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Development. 25: 2540-53. PMID 22156213 DOI: 10.1101/Gad.177527.111  0.96
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  0.96
2011 Eun C, Lorkovic ZJ, Naumann U, Long Q, Havecker ER, Simon SA, Meyers BC, Matzke AJ, Matzke M. AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana. Plos One. 6: e25730. PMID 21998686 DOI: 10.1371/Journal.Pone.0025730  0.96
2011 Kalavacharla V, Liu Z, Meyers BC, Thimmapuram J, Melmaiee K. Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing. Bmc Plant Biology. 11: 135. PMID 21985325 DOI: 10.1186/1471-2229-11-135  0.96
2011 La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi Mdel R, Chen S, Meyers BC, Peng Z, Zhu JK, Wang GL. A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proceedings of the National Academy of Sciences of the United States of America. 108: 15498-503. PMID 21896764 DOI: 10.1073/Pnas.1112704108  0.96
2011 Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Research. 21: 1478-86. PMID 21813626 DOI: 10.1101/Gr.114744.110  0.96
2011 Venu RC, Zhang Y, Weaver B, Carswell P, Mitchell TK, Meyers BC, Boehm MJ, Wang GL. Large scale identification of genes involved in plant-fungal interactions using Illumina's sequencing-by-synthesis technology. Methods in Molecular Biology (Clifton, N.J.). 722: 167-78. PMID 21590420 DOI: 10.1007/978-1-61779-040-9_12  0.4
2011 Venu R, Sreerekha M, Nobuta K, Beló A, Ning Y, An G, Meyers BC, Wang GL. Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars. Bmc Genomics. 12: 190. PMID 21492454 DOI: 10.1186/1471-2164-12-190  0.96
2011 McCormick KP, Willmann MR, Meyers BC. Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments. Silence. 2: 2. PMID 21356093 DOI: 10.1186/1758-907X-2-2  0.96
2011 Waidner LA, Burnside J, Anderson AS, Bernberg EL, German MA, Meyers BC, Green PJ, Morgan RW. A microRNA of infectious laryngotracheitis virus can downregulate and direct cleavage of ICP4 mRNA. Virology. 411: 25-31. PMID 21232778 DOI: 10.1016/J.Virol.2010.12.023  0.96
2011 Simon SA, Meyers BC. Small RNA-mediated epigenetic modifications in plants. Current Opinion in Plant Biology. 14: 148-55. PMID 21159545 DOI: 10.1016/J.Pbi.2010.11.007  0.96
2010 Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RH, Zody MC, Kunjeti SG, Donofrio NM, Meyers BC, Nusbaum C, Kamoun S. Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science (New York, N.Y.). 330: 1540-3. PMID 21148391 DOI: 10.1126/Science.1193070  1
2010 Arteaga-Vazquez M, Sidorenko L, Rabanal FA, Shrivistava R, Nobuta K, Green PJ, Meyers BC, Chandler VL. RNA-mediated trans-communication can establish paramutation at the b1 locus in maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 12986-91. PMID 20616013 DOI: 10.1073/Pnas.1007972107  0.96
2010 Lee TF, Zhai J, Meyers BC. Conservation and divergence in eukaryotic DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 107: 9027-8. PMID 20457928 DOI: 10.1073/Pnas.1005440107  0.96
2010 Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Research. 38: 5844-50. PMID 20448024 DOI: 10.1093/Nar/Gkq348  0.96
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Meyers BC, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.96
2010 Meyers BC, Simon SA, Zhai J. MicroRNA processing: battle of the bulge. Current Biology : Cb. 20: R68-70. PMID 20129044 DOI: 10.1016/J.Cub.2009.12.008  0.96
2010 Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/Gb-2010-11-2-R12  0.96
2010 Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G. Prediction of novel miRNAs and associated target genes in Glycine max. Bmc Bioinformatics. 11: S14. PMID 20122185 DOI: 10.1186/1471-2105-11-S1-S14  0.56
2010 Kanno T, Bucher E, Daxinger L, Huettel B, Kreil DP, Breinig F, Lind M, Schmitt MJ, Simon SA, Gurazada SG, Meyers BC, Lorkovic ZJ, Matzke AJ, Matzke M. RNA-directed DNA methylation and plant development require an IWR1-type transcription factor. Embo Reports. 11: 65-71. PMID 20010803 DOI: 10.1038/Embor.2009.246  0.96
2010 Mahalingam G, Meyers BC. Computational methods for comparative analysis of plant small RNAs. Methods in Molecular Biology (Clifton, N.J.). 592: 163-81. PMID 19802596 DOI: 10.1007/978-1-60327-005-2_12  0.96
2010 Nobuta K, McCormick K, Nakano M, Meyers BC. Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies. Methods in Molecular Biology (Clifton, N.J.). 592: 89-106. PMID 19802591 DOI: 10.1007/978-1-60327-005-2_7  0.96
2010 Venu RC, Sheshu Madhav M, Sreerekha MV, Nobuta K, Zhang Y, Carswell P, Boehm MJ, Meyers BC, Korth KL, Wang GL. Deep and comparative transcriptome analysis of rice plants infested by the beet armyworm (Spodoptera exigua) and water weevil (Lissorhoptrus oryzophilus) Rice. 3: 22-35. DOI: 10.1007/S12284-010-9037-8  0.96
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Meyers BC, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.96
2009 Simon SA, Meyers BC, Sherrier DJ. MicroRNAs in the rhizobia legume symbiosis. Plant Physiology. 151: 1002-8. PMID 19789286 DOI: 10.1104/Pp.109.144345  0.96
2009 De Paoli E, Dorantes-Acosta A, Zhai J, Accerbi M, Jeong DH, Park S, Meyers BC, Jorgensen RA, Green PJ. Distinct extremely abundant siRNAs associated with cosuppression in petunia. Rna (New York, N.Y.). 15: 1965-70. PMID 19776157 DOI: 10.1261/Rna.1706109  0.96
2009 Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, ... ... Meyers BC, et al. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461: 393-8. PMID 19741609 DOI: 10.1038/Nature08358  0.96
2009 Simon SA, Zhai J, Nandety RS, McCormick KP, Zeng J, Mejia D, Meyers BC. Short-read sequencing technologies for transcriptional analyses. Annual Review of Plant Biology. 60: 305-33. PMID 19575585 DOI: 10.1146/Annurev.Arplant.043008.092032  0.96
2009 Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J. MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific. Virology. 388: 128-36. PMID 19328516 DOI: 10.1016/J.Virol.2009.02.043  0.96
2009 German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nature Protocols. 4: 356-62. PMID 19247285 DOI: 10.1038/Nprot.2009.8  0.96
2009 Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/Tpc.108.063206  0.96
2008 Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J. Sequence conservation and differential expression of Marek's disease virus microRNAs. Journal of Virology. 82: 12213-20. PMID 18842708 DOI: 10.1128/Jvi.01722-08  0.96
2008 Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga-Vazquez M, Sidorenko L, Jeong DH, Yen Y, Green PJ, Chandler VL, Meyers BC. Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. Proceedings of the National Academy of Sciences of the United States of America. 105: 14958-63. PMID 18815367 DOI: 10.1073/Pnas.0808066105  0.96
2008 Meyers BC, Matzke M, Sundaresan V. The RNA world is alive and well. Trends in Plant Science. 13: 311-3. PMID 18562242 DOI: 10.1016/J.Tplants.2008.05.003  0.96
2008 German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nature Biotechnology. 26: 941-6. PMID 18542052 DOI: 10.1038/Nbt1417  0.96
2008 Iandolino A, Nobuta K, da Silva FG, Cook DR, Meyers BC. Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures. Bmc Plant Biology. 8: 53. PMID 18474095 DOI: 10.1186/1471-2229-8-53  0.96
2008 Zhai J, Liu J, Liu B, Li P, Meyers BC, Chen X, Cao X. Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. Plos Genetics. 4: e1000056. PMID 18437202 DOI: 10.1371/Journal.Pgen.1000056  0.96
2008 Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW. Deep sequencing of chicken microRNAs. Bmc Genomics. 9: 185. PMID 18430245 DOI: 10.1186/1471-2164-9-185  0.96
2008 Peiffer JA, Kaushik S, Sakai H, Arteaga-Vazquez M, Sanchez-Leon N, Ghazal H, Vielle-Calzada JP, Meyers BC. A spatial dissection of the Arabidopsis floral transcriptome by MPSS. Bmc Plant Biology. 8: 43. PMID 18426585 DOI: 10.1186/1471-2229-8-43  0.96
2008 Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore RW, Bent AF. Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Molecular Plant-Microbe Interactions : Mpmi. 21: 646-57. PMID 18393624 DOI: 10.1094/Mpmi-21-5-0646  0.96
2008 Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ. Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proceedings of the National Academy of Sciences of the United States of America. 105: 4951-6. PMID 18353984 DOI: 10.1073/Pnas.0708743105  0.96
2008 Lin H, Ouyang S, Egan A, Nobuta K, Haas BJ, Zhu W, Gu X, Silva JC, Meyers BC, Buell CR. Characterization of paralogous protein families in rice. Bmc Plant Biology. 8: 18. PMID 18284697 DOI: 10.1186/1471-2229-8-18  0.96
2008 Kuang H, Caldwell KS, Meyers BC, Michelmore RW. Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. The Plant Journal : For Cell and Molecular Biology. 54: 69-80. PMID 18182023 DOI: 10.1111/J.1365-313X.2008.03408.X  0.84
2008 Simon SA, Zhai J, Zeng J, Meyers BC. The cornucopia of small RNAs in plant genomes Rice. 1: 52-62. DOI: 10.1007/S12284-008-9008-5  0.96
2007 Nobuta K, Vemaraju K, Meyers BC. Methods for analysis of gene expression in plants using MPSS. Methods in Molecular Biology (Clifton, N.J.). 406: 387-408. PMID 18287704 DOI: 10.1007/978-1-59745-535-0_19  0.96
2007 Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore RW, Coughlan SJ, Meyers BC. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. Bmc Genomics. 8: 414. PMID 17997849 DOI: 10.1186/1471-2164-8-414  0.84
2007 Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW. Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. Bmc Plant Biology. 7: 56. PMID 17956627 DOI: 10.1186/1471-2229-7-56  0.84
2007 Ganko EW, Meyers BC, Vision TJ. Divergence in expression between duplicated genes in Arabidopsis. Molecular Biology and Evolution. 24: 2298-309. PMID 17670808 DOI: 10.1093/Molbev/Msm158  0.96
2007 Nobuta K, Venu RC, Lu C, Beló A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang GL, Meyers BC. An expression atlas of rice mRNAs and small RNAs. Nature Biotechnology. 25: 473-7. PMID 17351617 DOI: 10.1038/Nbt1291  0.96
2006 Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310  0.96
2006 Burnside J, Bernberg E, Anderson A, Lu C, Meyers BC, Green PJ, Jain N, Isaacs G, Morgan RW. Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript. Journal of Virology. 80: 8778-86. PMID 16912324 DOI: 10.1128/Jvi.00831-06  0.96
2006 Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794  0.96
2006 Tetko IV, Haberer G, Rudd S, Meyers B, Mewes HW, Mayer KFX. Spatiotemporal expression control correlates with intragenic scaffold matrix attachment regions (S/MARs) in Arabidopsis thaliana Plos Computational Biology. 2: 136-145. PMID 16604187 DOI: 10.1371/Journal.Pcbi.0020021  0.96
2006 Meyers BC, Souret FF, Lu C, Green PJ. Sweating the small stuff: microRNA discovery in plants. Current Opinion in Biotechnology. 17: 139-46. PMID 16460926 DOI: 10.1016/J.Copbio.2006.01.008  0.96
2006 Nakano M, Nobuta K, Vemaraju K, Tej SS, Skogen JW, Meyers BC. Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. Nucleic Acids Research. 34: D731-5. PMID 16381968 DOI: 10.1093/Nar/Gkj077  0.96
2005 Meyers BC, Kaushik S, Nandety RS. Evolving disease resistance genes. Current Opinion in Plant Biology. 8: 129-34. PMID 15752991 DOI: 10.1016/J.Pbi.2005.01.002  0.96
2005 Nobuta K, Meyers BC. Pseudomonas versus arabidopsis: Models for genomic research into plant disease resistance Bioscience. 55: 679-686. DOI: 10.1641/0006-3568(2005)055[0679:Pvamfg]2.0.Co;2  0.96
2004 Kuang H, Woo SS, Meyers BC, Nevo E, Michelmore RW. Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. The Plant Cell. 16: 2870-94. PMID 15494555 DOI: 10.1105/Tpc.104.025502  0.84
2004 Meyers BC, Scalabrin S, Morgante M. Mapping and sequencing complex genomes: let's get physical! Nature Reviews. Genetics. 5: 578-88. PMID 15266340 DOI: 10.1038/Nrg1404  0.84
2004 Wright SI, Yau CB, Looseley M, Meyers BC. Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Molecular Biology and Evolution. 21: 1719-26. PMID 15201397 DOI: 10.1093/Molbev/Msh191  0.96
2003 Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. The Plant Cell. 15: 809-34. PMID 12671079 DOI: 10.1105/Tpc.009308  0.84
2003 Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. Erratum: Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis (Plant Cell (2003) 15 (809-834)) The Plant Cell. 15. DOI: 10.1105/Tpc.Cor308  0.84
2002 Meyers BC, Morgante M, Michelmore RW. TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. The Plant Journal : For Cell and Molecular Biology. 32: 77-92. PMID 12366802 DOI: 10.1046/J.1365-313X.2002.01404.X  0.84
2002 Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Research. 12: 1305-15. PMID 12213767 DOI: 10.1101/Gr.159402  0.96
2002 Shen KA, Chin DB, Arroyo-Garcia R, Ochoa OE, Lavelle DO, Wroblewski T, Meyers BC, Michelmore RW. Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Molecular Plant-Microbe Interactions : Mpmi. 15: 251-61. PMID 11952128 DOI: 10.1094/Mpmi.2002.15.3.251  0.84
2001 Meyers BC, Tingey SV, Morgante M. Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Research. 11: 1660-76. PMID 11591643 DOI: 10.1101/Gr.188201  0.84
1999 Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND. Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. The Plant Journal : For Cell and Molecular Biology. 20: 317-32. PMID 10571892 DOI: 10.1046/J.1365-313X.1999.T01-1-00606.X  0.96
1998 Michelmore RW, Meyers BC. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Research. 8: 1113-30. PMID 9847076 DOI: 10.1101/Gr.8.11.1113  0.84
1998 Meyers BC, Shen KA, Rohani P, Gaut BS, Michelmore RW. Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. The Plant Cell. 10: 1833-46. PMID 9811792 DOI: 10.1105/Tpc.10.11.1833  0.96
1998 Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW. The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. The Plant Cell. 10: 1817-32. PMID 9811791 DOI: 10.1105/Tpc.10.11.1817  0.84
1998 Shen KA, Meyers BC, Islam-Faridi MN, Chin DB, Stelly DM, Michelmore RW. Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Molecular Plant-Microbe Interactions : Mpmi. 11: 815-23. PMID 9675895 DOI: 10.1094/Mpmi.1998.11.8.815  0.84
1996 Anderson PA, Okubara PA, Arroyo-Garcia R, Meyers BC, Michelmore RW. Molecular analysis of irradiation-induced and spontaneous deletion mutants at a disease resistance locus in Lactuca sativa. Molecular & General Genetics : Mgg. 251: 316-25. PMID 8676874 DOI: 10.1007/Bf02172522  0.84
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