☰

Mario Latendresse, Ph.D. - Publications

Affiliations: 
2000 Université de Montréal, Montréal, Canada 
Area:
Computer Science
Tree Info Similar researchers PubMed Report error

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Karp PD, Midford PE, Billington R, Kothari A, Krummenacker M, Latendresse M, Ong WK, Subhraveti P, Caspi R, Fulcher C, Keseler IM, Paley SM. Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Briefings in Bioinformatics. PMID 31813964 DOI: 10.1093/bib/bbz104  0.37
2019 Krummenacker M, Latendresse M, Karp PD. Metabolic route computation in organism communities. Microbiome. 7: 89. PMID 31174602 DOI: 10.1186/S40168-019-0706-6  0.37
2019 Midford PE, Latendresse M, O'Maille PE, Karp PD. Using Pathway Covering to Explore Connections among Metabolites. Metabolites. 9. PMID 31052521 DOI: 10.3390/Metabo9050088  0.368
2019 Karp PD, Ivanova N, Krummenacker M, Kyrpides N, Latendresse M, Midford P, Ong WK, Paley S, Seshadri R. A Comparison of Microbial Genome Web Portals. Frontiers in Microbiology. 10: 208. PMID 30853946 DOI: 10.3389/Fmicb.2019.00208  0.413
2018 Karp PD, Ong WK, Paley S, Billington R, Caspi R, Fulcher C, Kothari A, Krummenacker M, Latendresse M, Midford PE, Subhraveti P, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, et al. The EcoCyc Database. Ecosal Plus. 8. PMID 30406744 DOI: 10.1128/ecosalplus.ESP-0006-2018  0.33
2018 Karp PD, Weaver D, Latendresse M. How accurate is automated gap filling of metabolic models? Bmc Systems Biology. 12: 73. PMID 29914471 DOI: 10.1186/S12918-018-0593-7  0.426
2018 Latendresse M, Karp PD. Evaluation of reaction gap-filling accuracy by randomization. Bmc Bioinformatics. 19: 53. PMID 29444634 DOI: 10.1186/S12859-018-2050-4  0.315
2017 Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley SM, Subhraveti P. The BioCyc collection of microbial genomes and metabolic pathways. Briefings in Bioinformatics. PMID 29447345 DOI: 10.1093/Bib/Bbx085  0.438
2017 Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD. The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Research. PMID 29059334 DOI: 10.1093/Nar/Gkx935  0.441
2016 Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martínez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Peralta-Gil M, et al. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Research. PMID 27899573 DOI: 10.1093/Nar/Gkw1003  0.41
2015 Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research. PMID 26527732 DOI: 10.1093/nar/gkv1164  0.394
2015 Karp PD, Billington R, Holland TA, Kothari A, Krummenacker M, Weaver D, Latendresse M, Paley S. Computational Metabolomics Operations at BioCyc.org. Metabolites. 5: 291-310. PMID 26011592 DOI: 10.3390/Metabo5020291  0.444
2014 Latendresse M. Efficiently gap-filling reaction networks. Bmc Bioinformatics. 15: 225. PMID 24972703 DOI: 10.1186/1471-2105-15-225  0.339
2014 Latendresse M, Krummenacker M, Karp PD. Optimal metabolic route search based on atom mappings. Bioinformatics (Oxford, England). 30: 2043-50. PMID 24642060 DOI: 10.1093/Bioinformatics/Btu150  0.387
2014 Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases Nucleic Acids Research. 42: D459-D471. PMID 24225315 DOI: 10.1093/nar/gkt1103  0.39
2013 Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Schröder I, et al. EcoCyc: Fusing model organism databases with systems biology Nucleic Acids Research. 41: D605-D612. PMID 23143106 DOI: 10.1093/Nar/Gks1027  0.355
2012 Paley SM, Latendresse M, Karp PD. Regulatory network operations in the Pathway Tools software. Bmc Bioinformatics. 13: 243. PMID 22998532 DOI: 10.1186/1471-2105-13-243  0.341
2012 Latendresse M, Krummenacker M, Trupp M, Karp PD. Construction and completion of flux balance models from pathway databases. Bioinformatics (Oxford, England). 28: 388-96. PMID 22262672 DOI: 10.1093/Bioinformatics/Btr681  0.38
2012 Latendresse M, Paley S, Karp PD. Browsing metabolic and regulatory networks with BioCyc. Methods in Molecular Biology (Clifton, N.J.). 804: 197-216. PMID 22144155 DOI: 10.1007/978-1-61779-361-5_11  0.398
2012 Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research. 40: D742-53. PMID 22102576 DOI: 10.1093/nar/gkr1014  0.392
2012 Dubé D, Latendresse M, Tesson P. Conservative groupoids recognize only regular languages Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7183: 216-227. DOI: 10.1016/J.Ic.2014.08.005  0.492
2011 Karp PD, Latendresse M, Caspi R. The pathway tools pathway prediction algorithm. Standards in Genomic Sciences. 5: 424-9. PMID 22675592 DOI: 10.4056/Sigs.1794338  0.414
2011 Latendresse M, Karp PD. Web-based metabolic network visualization with a zooming user interface. Bmc Bioinformatics. 12: 176. PMID 21595965 DOI: 10.1186/1471-2105-12-176  0.354
2011 Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, et al. EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Research. 39: D583-90. PMID 21097882 DOI: 10.1093/Nar/Gkq1143  0.355
2011 Karp PD, Keseler IM, Altman T, Caspi R, Fulcher CA, Subhraveti P, Kothari A, Krummenacker M, Latendresse M, Lee T, Paley SM, Shearer AG, Trupp M. BioCyc: Microbial Genomes and Cellular Networks: The BioCyc system helps scientists navigate the greatly expanding information space of genomes and metabolic information Microbe Magazine. 6: 176-182. DOI: 10.1128/Microbe.6.176.1  0.392
2011 Karp PD, Latendresse M, Paley S. Using cellular network diagrams to interpret large-scale datasets: Past progress and future challenges Proceedings of Spie - the International Society For Optical Engineering. 7865. DOI: 10.1117/12.881997  0.35
2010 Latendresse M, Karp PD. An advanced web query interface for biological databases. Database : the Journal of Biological Databases and Curation. 2010: baq006. PMID 20624715 DOI: 10.7490/F1000Research.368.1  0.336
2010 Zhang P, Dreher K, Karthikeyan A, Chi A, Pujar A, Caspi R, Karp P, Kirkup V, Latendresse M, Lee C, Mueller LA, Muller R, Rhee SY. Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. Plant Physiology. 153: 1479-91. PMID 20522724 DOI: 10.1104/Pp.110.157396  0.446
2010 Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R. Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Briefings in Bioinformatics. 11: 40-79. PMID 19955237 DOI: 10.1093/Bib/Bbp043  0.471
2010 Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research. 38: D473-9. PMID 19850718 DOI: 10.1093/nar/gkp875  0.389
2008 Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research. 36: D623-31. PMID 17965431 DOI: 10.1093/Nar/Gkm900  0.443
2007 Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J. Multidimensional annotation of the Escherichia coli K-12 genome. Nucleic Acids Research. 35: 7577-90. PMID 17940092 DOI: 10.1093/Nar/Gkm740  0.359
2005 Latendresse M, Feeley M. Generation of fast interpreters for Huffman compressed bytecode Science of Computer Programming. 57: 295-317. DOI: 10.1016/J.Scico.2004.07.005  0.481
Show low-probability matches.