Julia Bailey-Serres - Publications

Plant Biology University of California, Riverside, Riverside, CA, United States 
Botany Biology, Biochemistry

140 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Bailey-Serres J, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. 184: 5070. PMID 34534466 DOI: 10.1016/j.cell.2021.08.032  1
2021 Liang Y, Biswas S, Kim B, Bailey-Serres J, Septiningsih EM. Improved Transformation and Regeneration of Rice: Disruption of as a Test Case via CRISPR-Cas9. International Journal of Molecular Sciences. 22. PMID 34209672 DOI: 10.3390/ijms22136989  1
2021 Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Bailey-Serres J, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. PMID 34010619 DOI: 10.1016/j.cell.2021.04.024  1
2020 Schaarschmidt S, Fischer A, Lawas LMF, Alam R, Septiningsih EM, Bailey-Serres J, Jagadish SVK, Huettel B, Hincha DK, Zuther E. Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in L. International Journal of Molecular Sciences. 21. PMID 33142722 DOI: 10.3390/ijms21218148  1
2020 Alam R, Hummel M, Yeung E, Locke AM, Ignacio JCI, Baltazar MD, Jia Z, Ismail AM, Septiningsih EM, Bailey-Serres J. Flood resilience loci and interact in seedlings established underwater. Plant Direct. 4: e00240. PMID 32775950 DOI: 10.1002/pld3.240  1
2020 Bailey-Serres J, Voesenek LACJ. Genetic drivers of high-rise rice that survives deep floods. Nature. PMID 32669726 DOI: 10.1038/D41586-020-02059-0  1
2020 Chantarachot T, Sorenson RS, Hummel M, Ke H, Kettenburg AT, Chen D, Aiyetiwa K, Dehesh K, Eulgem T, Sieburth LE, Bailey-Serres J. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs. Nature Plants. PMID 32483330 DOI: 10.1038/S41477-020-0681-8  1
2020 Akmakjian GZ, Bailey-Serres J. Nitrogen-responsive transcription factor kinetics meter plant growth. Proceedings of the National Academy of Sciences of the United States of America. 117: 13196-13198. PMID 32471951 DOI: 10.1073/Pnas.2007441117  0.01
2020 Lee TA, Bailey-Serres J. Conserved and nuanced hierarchy of gene regulatory response to hypoxia. The New Phytologist. PMID 31953954 DOI: 10.1111/nph.16437  1
2020 Bailey-Serres J, Zhai J, Seki M. The Dynamic Kaleidoscope of RNA Biology in Plants. Plant Physiology. 182: 1-9. PMID 31908318 DOI: 10.1104/Pp.19.01558  0.2
2019 Lee TA, Bailey-Serres J. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. The Plant Cell. 31: 2573-2595. PMID 33831153 DOI: 10.1105/tpc.19.00463  1
2019 Traubenik S, Reynoso MA, Hobecker KV, Lancia M, Hummel M, Rosen B, Town C, Bailey-Serres J, Blanco FA, Zanetti ME. Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and non-coding RNAs. The Plant Cell. PMID 31748328 DOI: 10.1105/Tpc.19.00647  1
2019 Bailey-Serres J, Parker JE, Ainsworth EA, Oldroyd GED, Schroeder JI. Genetic strategies for improving crop yields. Nature. 575: 109-118. PMID 31695205 DOI: 10.1038/S41586-019-1679-0  0.08
2019 Reynoso MA, Kajala K, Bajic M, West DA, Pauluzzi G, Yao AI, Hatch K, Zumstein K, Woodhouse M, Rodriguez-Medina J, Sinha N, Brady SM, Deal RB, Bailey-Serres J. Evolutionary flexibility in flooding response circuitry in angiosperms. Science (New York, N.Y.). 365: 1291-1295. PMID 31604238 DOI: 10.1126/Science.Aax8862  1
2019 Lee TA, Bailey-Serres J. Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress. The Plant Cell. PMID 31519798 DOI: 10.1105/Tpc.19.00463  1
2019 Hartman S, Liu Z, van Veen H, Vicente J, Reinen E, Martopawiro S, Zhang H, van Dongen N, Bosman F, Bassel GW, Visser EJW, Bailey-Serres J, Theodoulou FL, Hebelstrup KH, Gibbs DJ, et al. Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. Nature Communications. 10: 4020. PMID 31488841 DOI: 10.1038/S41467-019-12045-4  1
2019 Dedow LK, Bailey-Serres J. Searching for a Match: Structure, Function and Application of Sequence-Specific RNA-Binding Proteins. Plant & Cell Physiology. PMID 31329953 DOI: 10.1093/Pcp/Pcz072  0.48
2019 Yeung E, Bailey-Serres J, Sasidharan R. After The Deluge: Plant Revival Post-Flooding. Trends in Plant Science. PMID 30857921 DOI: 10.1016/j.tplants.2019.02.007  1
2018 Yeung E, van Veen H, Vashisht D, Sobral Paiva AL, Hummel M, Rankenberg T, Steffens B, Steffen-Heins A, Sauter M, de Vries M, Schuurink RC, Bazin J, Bailey-Serres J, Voesenek LACJ, Sasidharan R. A stress recovery signaling network for enhanced flooding tolerance in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29891679 DOI: 10.1073/Pnas.1803841115  1
2018 Bailey-Serres J, Pierik R, Ruban A, Wingler A. The Dynamic Plant: Capture, Transformation, and Management of Energy. Plant Physiology. 176: 961-966. PMID 29438068 DOI: 10.1104/Pp.18.00041  0.01
2017 Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West D, Zumstein K, Woodhouse M, Bubb KL, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal R. Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules. The Plant Cell. PMID 29229750 DOI: 10.1105/Tpc.17.00581  1
2017 Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490  1
2017 Chantarachot T, Bailey-Serres J. Polysomes, stress granules and processing bodies: a dynamic triumvirate controlling cytoplasmic mRNA fate and function. Plant Physiology. PMID 29158329 DOI: 10.1104/Pp.17.01468  0.01
2017 Locke AM, Barding GA, Sathnur S, Larive CK, Bailey-Serres J. Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery. Plant, Cell & Environment. PMID 29094353 DOI: 10.1111/Pce.13094  1
2017 Bazin J, Baerenfaller K, Gosai SJ, Gregory BD, Crespi M, Bailey-Serres J. Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087317 DOI: 10.1073/Pnas.1708433114  1
2017 Reynoso M, Pauluzzi G, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha N, Brady SM, Bailey-Serres J. Nuclear transcriptomes at high resolution using retooled INTACT. Plant Physiology. PMID 28956755 DOI: 10.1104/Pp.17.00688  1
2017 Lee TA, Bailey-Serres J. Lighting the shadows: methods that expose nuclear and cytoplasmic gene regulatory control. Current Opinion in Biotechnology. 49: 29-34. PMID 28800418 DOI: 10.1016/J.Copbio.2017.07.010  1
2017 de Lorenzo L, Sorenson R, Bailey-Serres J, Hunt AG. Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia. The Plant Cell. PMID 28559476 DOI: 10.1105/Tpc.16.00746  1
2017 Bailey-Serres J, Ma W. Plant biology: An immunity boost combats crop disease. Nature. PMID 28514444 DOI: 10.1038/Nature22497  0.12
2017 Sasidharan R, Bailey-Serres J, Ashikari M, Atwell BJ, Colmer TD, Fagerstedt K, Fukao T, Geigenberger P, Hebelstrup KH, Hill RD, Holdsworth MJ, Ismail AM, Licausi F, Mustroph A, Nakazono M, et al. Community recommendations on terminology and procedures used in flooding and low oxygen stress research. The New Phytologist. PMID 28277605 DOI: 10.1111/Nph.14519  1
2017 Glenn W, Stone SE, Ho SH, Sweredoski MJ, Moradian A, Hess S, Bailey-Serres J, Tirrell DA. BONCAT enables time-resolved analysis of protein synthesis in native plant tissue. Plant Physiology. PMID 28104718 DOI: 10.1104/Pp.16.01762  0.01
2016 Zhao D, Hamilton JP, Hardigan M, Yin D, He T, Vaillancourt B, Reynoso M, Pauluzzi G, Funkhouser S, Cui Y, Bailey-Serres J, Jiang J, Buell CR, Jiang N. Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda, Md.). PMID 27852012 DOI: 10.1534/G3.116.036020  1
2016 Van Veen H, Vashisht D, Akman M, Girke T, Mustroph A, Reinen E, Hartman S, Kooiker M, van Tienderen P, Schranz ME, Bailey-Serres J, Voesenek LA, Sasidharan R. Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress. Plant Physiology. PMID 27208254 DOI: 10.1104/Pp.16.00472  1
2016 Pauluzzi G, Bailey-Serres J. Flexible Ion Barrier. Cell. 164: 345-6. PMID 26824650 DOI: 10.1016/J.Cell.2016.01.005  1
2016 Voesenek LA, Sasidharan R, Visser EJ, Bailey-Serres J. Flooding stress signaling through perturbations in oxygen, ethylene, nitric oxide and light. The New Phytologist. 209: 39-43. PMID 26625347 DOI: 10.1111/nph.13775  1
2015 Kretzschmar T, Pelayo MA, Trijatmiko KR, Gabunada LF, Alam R, Jimenez R, Mendioro MS, Slamet-Loedin IH, Sreenivasulu N, Bailey-Serres J, Ismail AM, Mackill DJ, Septiningsih EM. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice. Nature Plants. 1: 15124. PMID 27250677 DOI: 10.1038/Nplants.2015.124  1
2015 Voesenek LA, Bailey-Serres J. Hypoxia and development: Air conditional. Nature Plants. 1: 15095. PMID 27250259 DOI: 10.1038/Nplants.2015.95  1
2015 Gasch P, Fundinger M, Müller JT, Lee T, Bailey-Serres J, Mustroph A. Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis. The Plant Cell. PMID 26668304 DOI: 10.1105/Tpc.15.00866  1
2015 Hummel M, Dobrenel T, Cordewener JJ, Davanture M, Meyer C, Smeekens SJ, Bailey-Serres J, America TA, Hanson J. Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. Journal of Proteomics. 128: 436-49. PMID 26232565 DOI: 10.1016/J.Jprot.2015.07.004  1
2015 Bazin J, Bailey-Serres J. Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis. Frontiers in Plant Science. 6: 400. PMID 26106399 DOI: 10.3389/Fpls.2015.00400  1
2015 Browning KS, Bailey-Serres J. Mechanism of cytoplasmic mRNA translation. The Arabidopsis Book / American Society of Plant Biologists. 13: e0176. PMID 26019692 DOI: 10.1199/Tab.0176  0.01
2015 Sorenson R, Bailey-Serres J. Rapid immunopurification of ribonucleoprotein complexes of plants. Methods in Molecular Biology (Clifton, N.J.). 1284: 209-19. PMID 25757774 DOI: 10.1007/978-1-4939-2444-8_10  1
2015 Reynoso MA, Juntawong P, Lancia M, Blanco FA, Bailey-Serres J, Zanetti ME. Translating Ribosome Affinity Purification (TRAP) followed by RNA sequencing technology (TRAP-SEQ) for quantitative assessment of plant translatomes. Methods in Molecular Biology (Clifton, N.J.). 1284: 185-207. PMID 25757773 DOI: 10.1007/978-1-4939-2444-8_9  1
2015 Juntawong P, Hummel M, Bazin J, Bailey-Serres J. Ribosome profiling: a tool for quantitative evaluation of dynamics in mRNA translation. Methods in Molecular Biology (Clifton, N.J.). 1284: 139-73. PMID 25757771 DOI: 10.1007/978-1-4939-2444-8_7  1
2015 Mickelbart MV, Hasegawa PM, Bailey-Serres J. Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability. Nature Reviews. Genetics. 16: 237-51. PMID 25752530 DOI: 10.1038/Nrg3901  1
2015 Voesenek LA, Bailey-Serres J. Flood adaptive traits and processes: an overview. The New Phytologist. 206: 57-73. PMID 25580769 DOI: 10.1111/nph.13209  1
2015 Kretzschmar T, Pelayo MAF, Trijatmiko KR, Gabunada LFM, Alam R, Jimenez R, Mendioro MS, Slamet-Loedin IH, Sreenivasulu N, Bailey-Serres J, Ismail AM, Mackill DJ, Septiningsih EM. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice Nature Plants. 1. DOI: 10.1038/nplants.2015.124  1
2014 Giuntoli B, Lee SC, Licausi F, Kosmacz M, Oosumi T, van Dongen JT, Bailey-Serres J, Perata P. A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis. Plos Biology. 12: e1001950. PMID 25226037 DOI: 10.1371/Journal.Pbio.1001950  1
2014 Bailey-Serres J, Colmer TD. Plant tolerance of flooding stress--recent advances. Plant, Cell & Environment. 37: 2211-5. PMID 25074340 DOI: 10.1111/pce.12420  1
2014 Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM. Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiology. 166: 455-69. PMID 24868032 DOI: 10.1104/Pp.114.239392  1
2014 Lin SY, Chen PW, Chuang MH, Juntawong P, Bailey-Serres J, Jauh GY. Profiling of translatomes of in vivo-grown pollen tubes reveals genes with roles in micropylar guidance during pollination in Arabidopsis. The Plant Cell. 26: 602-18. PMID 24532595 DOI: 10.1105/Tpc.113.121335  1
2014 Sorenson R, Bailey-Serres J. Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 2373-8. PMID 24469793 DOI: 10.1073/Pnas.1314851111  1
2014 Mustroph A, Barding GA, Kaiser KA, Larive CK, Bailey-Serres J. Characterization of distinct root and shoot responses to low-oxygen stress in Arabidopsis with a focus on primary C- and N-metabolism. Plant, Cell & Environment. 37: 2366-80. PMID 24450922 DOI: 10.1111/Pce.12282  1
2014 Juntawong P, Girke T, Bazin J, Bailey-Serres J. Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: E203-12. PMID 24367078 DOI: 10.1073/Pnas.1317811111  1
2014 Ron M, Kajala K, Pauluzzui G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal R, Bailey-Serres J, Brady S. A rapid method for translating molecular tools for crop species F1000research. 5. DOI: 10.7490/F1000Research.1097119.1  1
2014 Sorenson R, Bailey-Serres J. Selective mRNA translation tailors low oxygen energetics Plant Cell Monographs. 21: 95-115. DOI: 10.1007/978-3-7091-1254-0_6  1
2013 van Veen H, Mustroph A, Barding GA, Vergeer-van Eijk M, Welschen-Evertman RAM, Pedersen O, Visser EJW, Larive CK, Pierik R, Bailey-Serres J, Voesenek LACJ, Sasidharan R. Two Rumex species from contrasting hydrological niches regulate flooding tolerance through distinct mechanisms Plant Cell. 25: 4691-4707. PMID 24285788 DOI: 10.1105/Tpc.113.119016  1
2013 Voesenek LACJ, Bailey-Serres J. Flooding tolerance: O2 sensing and survival strategies Current Opinion in Plant Biology. 16: 647-653. PMID 23830867 DOI: 10.1016/J.Pbi.2013.06.008  1
2013 Juntawong P, Sorenson R, Bailey-Serres J. Cold shock protein 1 chaperones mRNAs during translation in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 74: 1016-28. PMID 23551487 DOI: 10.1111/Tpj.12187  1
2013 Luhua S, Hegie A, Suzuki N, Shulaev E, Luo X, Cenariu D, Ma V, Kao S, Lim J, Gunay MB, Oosumi T, Lee SC, Harper J, Cushman J, Gollery M, ... ... Bailey-Serres J, et al. Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiologia Plantarum. 148: 322-33. PMID 23517122 DOI: 10.1111/Ppl.12013  1
2013 Bailey-Serres J. Microgenomics: Genome-scale, cell-specific monitoring of multiple gene regulation tiers Annual Review of Plant Biology. 64: 293-325. PMID 23451787 DOI: 10.1146/Annurev-Arplant-050312-120035  1
2013 Mustroph A, Zanetti ME, Girke T, Bailey-Serres J. Isolation and analysis of mRNAs from specific cell types of plants by ribosome immunopurification. Methods in Molecular Biology (Clifton, N.J.). 959: 277-302. PMID 23299683 DOI: 10.1007/978-1-62703-221-6_19  1
2013 Barding GA, Béni S, Fukao T, Bailey-Serres J, Larive CK. Comparison of GC-MS and NMR for metabolite profiling of rice subjected to submergence stress. Journal of Proteome Research. 12: 898-909. PMID 23205590 DOI: 10.1021/Pr300953K  1
2013 Moghe GD, Lehti-Shiu MD, Seddon AE, Yin S, Chen Y, Juntawong P, Brandizzi F, Bailey-Serres J, Shiu SH. Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiology. 161: 210-24. PMID 23132786 DOI: 10.1104/Pp.112.205245  1
2013 Reynoso MA, Blanco FA, Bailey-Serres J, Crespi M, Zanetti ME. Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula. The Plant Journal : For Cell and Molecular Biology. 73: 289-301. PMID 23050939 DOI: 10.1111/Tpj.12033  1
2012 Bailey-Serres J, Lee SC, Brinton E. Waterproofing crops: effective flooding survival strategies. Plant Physiology. 160: 1698-709. PMID 23093359 DOI: 10.1104/Pp.112.208173  1
2012 Fukao T, Yeung E, Bailey-Serres J. The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology. 160: 1795-807. PMID 23073696 DOI: 10.1104/Pp.112.207738  1
2012 Juntawong P, Bailey-Serres J. Dynamic Light Regulation of Translation Status in Arabidopsis thaliana. Frontiers in Plant Science. 3: 66. PMID 22645595 DOI: 10.3389/Fpls.2012.00066  1
2012 Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK. Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice. Plant Physiology. 159: 1111-24. PMID 22566494 DOI: 10.1104/Pp.112.194928  1
2012 Bailey-Serres J, Fukao T, Gibbs DJ, Holdsworth MJ, Lee SC, Licausi F, Perata P, Voesenek LA, van Dongen JT. Making sense of low oxygen sensing. Trends in Plant Science. 17: 129-38. PMID 22280796 DOI: 10.1016/J.Tplants.2011.12.004  1
2012 Chang R, Jang CJ, Branco-Price C, Nghiem P, Bailey-Serres J. Transient MPK6 activation in response to oxygen deprivation and reoxygenation is mediated by mitochondria and aids seedling survival in Arabidopsis. Plant Molecular Biology. 78: 109-22. PMID 22086331 DOI: 10.1007/S11103-011-9850-5  1
2012 Barding GA, Fukao T, Béni S, Bailey-Serres J, Larive CK. Differential metabolic regulation governed by the rice SUB1A gene during submergence stress and identification of alanylglycine by 1H NMR spectroscopy. Journal of Proteome Research. 11: 320-30. PMID 22017194 DOI: 10.1021/Pr200919B  1
2011 Gibbs DJ, Lee SC, Isa NM, Gramuglia S, Fukao T, Bassel GW, Correia CS, Corbineau F, Theodoulou FL, Bailey-Serres J, Holdsworth MJ. Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature. 479: 415-8. PMID 22020279 DOI: 10.1038/Nature10534  1
2011 Peña-Castro JM, van Zanten M, Lee SC, Patel MR, Voesenek LA, Fukao T, Bailey-Serres J. Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. The Plant Journal : For Cell and Molecular Biology. 67: 434-46. PMID 21481028 DOI: 10.1111/J.1365-313X.2011.04605.X  1
2011 Fukao T, Yeung E, Bailey-Serres J. The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. The Plant Cell. 23: 412-27. PMID 21239643 DOI: 10.1105/Tpc.110.080325  1
2011 Lee SC, Mustroph A, Sasidharan R, Vashisht D, Pedersen O, Oosumi T, Voesenek LA, Bailey-Serres J. Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia. The New Phytologist. 190: 457-71. PMID 21231933 DOI: 10.1111/J.1469-8137.2010.03590.X  1
2011 Vashisht D, Hesselink A, Pierik R, Ammerlaan JM, Bailey-Serres J, Visser EJ, Pedersen O, van Zanten M, Vreugdenhil D, Jamar DC, Voesenek LA, Sasidharan R. Natural variation of submergence tolerance among Arabidopsis thaliana accessions. The New Phytologist. 190: 299-310. PMID 21108648 DOI: 10.1111/J.1469-8137.2010.03552.X  1
2010 Bailey-Serres J, Voesenek LA. Life in the balance: a signaling network controlling survival of flooding. Current Opinion in Plant Biology. 13: 489-94. PMID 20813578 DOI: 10.1016/J.Pbi.2010.08.002  1
2010 Mustroph A, Bailey-Serres J. The Arabidopsis translatome cell-specific mRNA atlas: Mining suberin and cutin lipid monomer biosynthesis genes as an example for data application. Plant Signaling & Behavior. 5: 320-4. PMID 20220312 DOI: 10.4161/Psb.5.3.11187  1
2010 Jung KH, Seo YS, Walia H, Cao P, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald PC. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology. 152: 1674-92. PMID 20107022 DOI: 10.1104/Pp.109.152157  1
2010 Mustroph A, Lee SC, Oosumi T, Zanetti ME, Yang H, Ma K, Yaghoubi-Masihi A, Fukao T, Bailey-Serres J. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiology. 152: 1484-500. PMID 20097791 DOI: 10.1104/Pp.109.151845  1
2010 Bailey-Serres J, Fukao T, Ronald P, Ismail A, Heuer S, Mackill D. Submergence tolerant rice: SUB1's journey from landrace to modern cultivar Rice. 3: 138-147. DOI: 10.1007/S12284-010-9048-5  1
2009 Mustroph A, Zanetti ME, Jang CJ, Holtan HE, Repetti PP, Galbraith DW, Girke T, Bailey-Serres J. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 106: 18843-8. PMID 19843695 DOI: 10.1073/Pnas.0906131106  1
2009 Voesenek LA, Bailey-Serres J. Plant biology: Genetics of high-rise rice. Nature. 460: 959-60. PMID 19693073 DOI: 10.1038/460959A  1
2009 Bailey-Serres J, Sorenson R, Juntawong P. Getting the message across: cytoplasmic ribonucleoprotein complexes. Trends in Plant Science. 14: 443-53. PMID 19616989 DOI: 10.1016/J.Tplants.2009.05.004  1
2009 Mustroph A, Juntawong P, Bailey-Serres J. Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopurification methods. Methods in Molecular Biology (Clifton, N.J.). 553: 109-26. PMID 19588103 DOI: 10.1007/978-1-60327-563-7_6  1
2009 Fukao T, Harris T, Bailey-Serres J. Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Annals of Botany. 103: 143-50. PMID 18824474 DOI: 10.1093/Aob/Mcn172  1
2008 Fukao T, Bailey-Serres J. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences of the United States of America. 105: 16814-9. PMID 18936491 DOI: 10.1073/Pnas.0807821105  1
2008 Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 56: 743-55. PMID 18665916 DOI: 10.1111/J.1365-313X.2008.03642.X  1
2008 Van Breusegem F, Bailey-Serres J, Mittler R. Unraveling the tapestry of networks involving reactive oxygen species in plants. Plant Physiology. 147: 978-84. PMID 18612075 DOI: 10.1104/Pp.108.122325  1
2008 Bailey-Serres J, Voesenek LACJ. Flooding stress: Acclimations and genetic diversity Annual Review of Plant Biology. 59: 313-339. PMID 18444902 DOI: 10.1146/Annurev.Arplant.59.032607.092752  1
2008 Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu JK, Cushman JC, Gollery M, Girke T. Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiology. 147: 41-57. PMID 18354039 DOI: 10.1104/Pp.108.117366  1
2008 Fukao T, Bailey-Serres J. Ethylene-A key regulator of submergence responses in rice Plant Science. 175: 43-51. DOI: 10.1016/J.Plantsci.2007.12.002  1
2006 Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature. 442: 705-8. PMID 16900200 DOI: 10.1038/Nature04920  1
2006 Gollery M, Harper J, Cushman J, Mittler T, Girke T, Zhu JK, Bailey-Serres J, Mittler R. What makes species unique? The contribution of proteins with obscure features. Genome Biology. 7: R57. PMID 16859532 DOI: 10.1186/Gb-2006-7-7-R57  1
2006 Fukao T, Xu K, Ronald PC, Bailey-Serres J. A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell. 18: 2021-34. PMID 16816135 DOI: 10.1105/Tpc.106.043000  1
2006 Bailey-Serres J, Mittler R. The roles of reactive oxygen species in plant cells. Plant Physiology. 141: 311. PMID 16760480 DOI: 10.1104/Pp.104.900191  1
2005 Branco-Price C, Kawaguchi R, Ferreira RB, Bailey-Serres J. Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Annals of Botany. 96: 647-60. PMID 16081496 DOI: 10.1093/Aob/Mci217  1
2005 Bailey-Serres J, Chang R. Sensing and signalling in response to oxygen deprivation in plants and other organisms. Annals of Botany. 96: 507-18. PMID 16051633 DOI: 10.1093/Aob/Mci206  1
2005 Zanetti ME, Chang IF, Gong F, Galbraith DW, Bailey-Serres J. Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression. Plant Physiology. 138: 624-35. PMID 15955926 DOI: 10.1104/Pp.105.059477  1
2005 Horan K, Lauricha J, Bailey-Serres J, Raikhel N, Girke T. Genome cluster database. A sequence family analysis platform for Arabidopsis and rice. Plant Physiology. 138: 47-54. PMID 15888677 DOI: 10.1104/Pp.104.059048  1
2005 Chang IF, Szick-Miranda K, Pan S, Bailey-Serres J. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiology. 137: 848-62. PMID 15734919 DOI: 10.1104/Pp.104.053637  1
2005 Kawaguchi R, Bailey-Serres J. mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Research. 33: 955-65. PMID 15716313 DOI: 10.1093/Nar/Gki240  1
2004 Fukao T, Bailey-Serres J. Plant responses to hypoxia--is survival a balancing act? Trends in Plant Science. 9: 449-56. PMID 15337495 DOI: 10.1016/J.Tplants.2004.07.005  1
2004 Kawaguchi R, Girke T, Bray EA, Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 38: 823-39. PMID 15144383 DOI: 10.1111/J.1365-313X.2004.02090.X  1
2003 Williams AJ, Werner-Fraczek J, Chang IF, Bailey-Serres J. Regulated phosphorylation of 40S ribosomal protein S6 in root tips of maize. Plant Physiology. 132: 2086-97. PMID 12913163 DOI: 10.1104/Pp.103.022749  1
2003 Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J. Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. Annals of Botany. 91: 129-41. PMID 12509334 DOI: 10.1093/Aob/Mcf119  1
2003 Kawaguchi R, Williams AJ, Bray EA, Bailey-Serres J. Water-deficit-induced translational control in Nicotiana tabacum Plant, Cell and Environment. 26: 221-229. DOI: 10.1046/J.1365-3040.2003.00952.X  1
2003 Szick-Miranda K, Jayachandran S, Tam A, Werner-Fraczek J, Williams AJ, Bailey-Serres J. Evaluation of translational control mechanisms in response to oxygen deprivation in Maize Russian Journal of Plant Physiology. 50: 774-786. DOI: 10.1023/B:Rupp.0000003275.97021.2B  1
2002 Kawaguchi R, Bailey-Serres J. Regulation of translational initiation in plants. Current Opinion in Plant Biology. 5: 460-5. PMID 12183186 DOI: 10.1016/S1369-5266(02)00290-X  1
2002 Baxter-Burrell A, Yang Z, Springer PS, Bailey-Serres J. RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science (New York, N.Y.). 296: 2026-8. PMID 12065837 DOI: 10.1126/Science.1071505  1
2001 Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiology. 127: 398-415. PMID 11598216 DOI: 10.1104/Pp.010265  1
2001 Szick-Miranda K, Bailey-Serres J. Regulated Heterogeneity in 12-kDa P-protein Phosphorylation and Composition of Ribosomes in Maize (Zea mays L.) Journal of Biological Chemistry. 276: 10921-10928. PMID 11278810 DOI: 10.1074/jbc.M011002200  1
1999 Bailey-Serres J, Rochaix JD, Wassenegger M, Filipowicz W. Plants, their organelles, viruses and transgenes reveal the mechanisms and relevance of post-transcriptional processes. Leysin, VD, Switzerland, February 25-28, 1999. The Embo Journal. 18: 5153-8. PMID 10610321 DOI: 10.1093/emboj/18.19.5153  1
1999 Manjunath S, Williams AJ, Bailey-Serres J. Oxygen deprivation stimulates Ca2+-mediated phosphorylation of mRNA cap-binding protein elF4E in maize roots Plant Journal. 19: 21-30. PMID 10417723 DOI: 10.1046/J.1365-313X.1999.00489.X  1
1999 Bailey-Serres J. Selective translation of cytoplasmic mRNAs in plants Trends in Plant Science. 4: 142-148. DOI: 10.1016/S1360-1385(99)01386-2  1
1998 Fennoy SL, Nong T, Bailey-Serres J. Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize. The Plant Journal : For Cell and Molecular Biology. 15: 727-735. PMID 29368809 DOI: 10.1046/J.1365-313X.1998.00249.X  1
1998 Manjunath S, Lee CHK, Vanwinkle P, Bailey-Serres J. Molecular and biochemical characterization of cytosolic phosphoglucomutase in maize: Expression during development and in response to oxygen deprivation Plant Physiology. 117: 997-1006. PMID 9662542 DOI: 10.1104/Pp.117.3.997  1
1998 Szick K, Springer M, Bailey-Serres J. Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes Proceedings of the National Academy of Sciences of the United States of America. 95: 2378-2383. PMID 9482893 DOI: 10.1073/Pnas.95.5.2378  1
1998 Fennoy SL, Nong T, Bailey-Serres J. Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize Plant Journal. 15: 727-735. DOI: 10.1046/j.1365-313X.1998.00249.x  1
1998 Averill RH, Bailey-Serres J, Kruger NJ. Co-operation between cytosolic and plastidic oxidative pentose phosphate pathways revealed by 6-phosphogluconate dehydrogenase-deficient genotypes of maize Plant Journal. 14: 449-457. DOI: 10.1046/J.1365-313X.1998.00143.X  1
1997 Bailey-Serres J, Vangala S, Szick K, Lee CH. Acidic phosphoprotein complex of the 60S ribosomal subunit of maize seedling roots. Components and changes in response to flooding. Plant Physiology. 114: 1293-305. PMID 9276949 DOI: 10.1104/Pp.114.4.1293  1
1997 Fennoy SL, Jayachandran S, Bailey-Serres J. RNase activities are reduced concomitantly with conservation of total cellular RNA and ribosomes in O2-deprived seedling roots of maize Plant Physiology. 115: 1109-1117. DOI: 10.1104/Pp.115.3.1109  1
1996 Bailey-Serres J, Dawe RK. Both 5′ and 3′ sequences of maize adh1 mRNA are required for enhanced translation under low-oxygen conditions Plant Physiology. 112: 685-695. PMID 8883381 DOI: 10.1104/Pp.112.2.685  1
1996 Canel C, Bailey-Serres JN, Roose ML. Molecular characterization of the mitochondrial citrate synthase gene of an acidless pummelo (Citrus maxima) Plant Molecular Biology. 31: 143-147. PMID 8704147  1
1995 Pino ME, Mudd JB, Bailey-Serres J. Ozone-Induced Alterations in the Accumulation of Newly Synthesized Proteins in Leaves of Maize. Plant Physiology. 108: 777-785. PMID 12228510 DOI: 10.1104/Pp.108.2.777  1
1995 Canel C, Bailey-Serres JN, Roose ML. Pummelo fruit transcript homologous to ripening-induced genes Plant Physiology. 108: 1323-1324. PMID 7630961  1
1995 Jayachandran S, Bailey-Serres J. Nucleotide sequence of a cDNA for the maize protein synthesis initiation factor 4A Plant Physiology. 108: 1317-1318. PMID 7630958 DOI: 10.1104/Pp.108.3.1317  1
1995 Fennoy SL, Bailey-Serres J. Post-transcriptional regulation of gene expression in oxygen-deprived roots of maize Plant Journal. 7: 287-295. DOI: 10.1046/J.1365-313X.1995.7020287.X  1
1995 Pino ME, Mudd JB, Bailey-Serres J. Ozone-induced alterations in the accumulation of newly synthesized proteins in leaves of maize Plant Physiology. 108: 777-785.  1
1995 Canel C, Bailey-Serres JN, Roose ML. In vitro [14C] citrate uptake by tonoplast vesicles of acidless Citrus juice cells Journal of the American Society For Horticultural Science. 120: 510-514.  1
1993 Fennoy SL, Bailey-serres J. Synonymous codon usage in Zea mays L. Nuclear genes is varied by levels of C and G-ending codons Nucleic Acids Research. 21: 5294-5300. PMID 8265340 DOI: 10.1093/Nar/21.23.5294  1
1992 Bailey-Serres J, Tom J, Freeling M. Expression and distribution of cytosolic 6-phosphogluconate dehydrogenase isozymes in maize. Biochemical Genetics. 30: 233-46. PMID 1616479 DOI: 10.1007/Bf02396214  1
1992 Bailey-Serres J, Nguyen MT. Purification and characterization of cytosolic 6-phosphogluconate dehydrogenase isozymes from maize Plant Physiology. 100: 1580-1583. DOI: 10.1104/Pp.100.3.1580  1
1990 Bailey-Serres J, Freeling M. Hypoxic stress-induced changes in ribosomes of maize seedling roots. Plant Physiology. 94: 1237-43. PMID 16667823 DOI: 10.1104/Pp.94.3.1237  1
1988 Leaver CJ, Isaac PG, Small ID, Bailey-Serres J, Liddell AD, Hawkesford MJ. Mitochondrial Genome Diversity and Cytoplasmic Male Sterility in Higher Plants Philosophical Transactions of the Royal Society B. 319: 165-176. DOI: 10.1098/Rstb.1988.0040  1
1987 Bailey-Serres J, Leroy P, Jones SS, Wahleithner JA, Wolstenholme DR. Size distributions of circular molecules in plant mitochondrial DNAs. Current Genetics. 12: 49-53. PMID 2835173 DOI: 10.1007/Bf00420727  1
1986 Bailey-Serres J, Dixon LK, Liddell AD, Leaver CJ. Nuclear-mitochondrial interactions in cytoplasmic male-sterile sorghum. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 73: 252-60. PMID 24240858 DOI: 10.1007/Bf00289282  1
1986 Bailey-Serres J, Hanson DK, Fox TD, Leaver CJ. Mitochondrial genome rearrangement leads to extension and relocation of the cytochrome c oxidase subunit I gene in sorghum Cell. 47: 567-576. PMID 3022938 DOI: 10.1016/0092-8674(86)90621-5  1
1986 Bailey-Serres J, Dixon LK, Liddell AD, Leaver CJ. Nuclear-mitochondrial interactions in cytoplasmic male-sterile sorghum Theoretical and Applied Genetics. 73: 252-260. DOI: 10.1007/BF00289282  1
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