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Dana Carroll - Publications

Affiliations: 
Biochemistry University of Utah, Salt Lake City, UT 
Area:
Biochemistry, Molecular Biology
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Year Citation  Score
2019 Carroll D. Collateral damage: benchmarking off-target effects in genome editing. Genome Biology. 20: 114. PMID 31159845 DOI: 10.1186/S13059-019-1725-0  0.341
2018 Yarrington RM, Verma S, Schwartz S, Trautman JK, Carroll D. Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201707 DOI: 10.1073/Pnas.1810062115  0.422
2018 Carroll D. p53 Throws CRISPR a Curve. Trends in Pharmacological Sciences. PMID 30006230 DOI: 10.1016/J.Tips.2018.06.005  0.381
2017 Sarno R, Vicq Y, Uematsu N, Luka M, Lapierre C, Carroll D, Bastianelli G, Serero A, Nicolas A. Programming sites of meiotic crossovers using Spo11 fusion proteins. Nucleic Acids Research. PMID 28977556 DOI: 10.1093/Nar/Gkx739  0.42
2017 DeWitt M, Corn JE, Carroll D. Genome editing via delivery of Cas9 ribonucleoprotein. Methods (San Diego, Calif.). PMID 28410976 DOI: 10.1016/J.Ymeth.2017.04.003  0.406
2016 Carroll D. Genome editing: progress and challenges for medical applications. Genome Medicine. 8: 120. PMID 27846896 DOI: 10.1186/S13073-016-0378-9  0.328
2016 DeWitt MA, Magis W, Bray NL, Wang T, Berman JR, Urbinati F, Heo SJ, Mitros T, Muñoz DP, Boffelli D, Kohn DB, Walters MC, Carroll D, Martin DI, Corn JE. Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells. Science Translational Medicine. 8: 360ra134. PMID 27733558 DOI: 10.1126/Scitranslmed.Aaf9336  0.353
2016 Carroll D. A Perspective on the State of Genome Editing. Molecular Therapy : the Journal of the American Society of Gene Therapy. 24: 412-3. PMID 26952917 DOI: 10.1038/Mt.2016.28  0.384
2015 Chandrasegaran S, Carroll D. Origins of Programmable Nucleases for Genome Engineering. Journal of Molecular Biology. PMID 26506267 DOI: 10.1016/J.Jmb.2015.10.014  0.474
2015 Corrigan-Curay J, O'Reilly M, Kohn DB, Cannon PM, Bao G, Bushman FD, Carroll D, Cathomen T, Joung JK, Roth D, Sadelain M, Scharenberg AM, von Kalle C, Zhang F, Jambou R, et al. Genome editing technologies: defining a path to clinic. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 796-806. PMID 25943494 DOI: 10.1038/Mt.2015.54  0.375
2015 Baltimore D, Berg P, Botchan M, Carroll D, Charo RA, Church G, Corn JE, Daley GQ, Doudna JA, Fenner M, Greely HT, Jinek M, Martin GS, Penhoet E, Puck J, et al. Biotechnology. A prudent path forward for genomic engineering and germline gene modification. Science (New York, N.Y.). 348: 36-8. PMID 25791083 DOI: 10.1126/Science.Aab1028  0.331
2015 Carroll D. Genome editing by targeted chromosomal mutagenesis. Methods in Molecular Biology (Clifton, N.J.). 1239: 1-13. PMID 25408398 DOI: 10.1007/978-1-4939-1862-1_1  0.472
2014 Carroll D, Beumer KJ. Genome engineering with TALENs and ZFNs: repair pathways and donor design. Methods (San Diego, Calif.). 69: 137-41. PMID 24704173 DOI: 10.1016/J.Ymeth.2014.03.026  0.417
2014 Carroll D. Genome engineering with targetable nucleases. Annual Review of Biochemistry. 83: 409-39. PMID 24606144 DOI: 10.1146/Annurev-Biochem-060713-035418  0.503
2014 Carroll D. Precision genome engineering. Current Biology : Cb. 24: R102-3. PMID 24502778 DOI: 10.1016/J.Cub.2013.11.055  0.471
2014 Beumer KJ, Carroll D. Targeted genome engineering techniques in Drosophila. Methods (San Diego, Calif.). 68: 29-37. PMID 24412316 DOI: 10.1016/J.Ymeth.2013.12.002  0.378
2014 Pauwels K, Podevin N, Breyer D, Carroll D, Herman P. Engineering nucleases for gene targeting: Safety and regulatory considerations New Biotechnology. 31: 18-27. PMID 23851284 DOI: 10.1016/J.Nbt.2013.07.001  0.362
2013 Carroll D. Staying on target with CRISPR-Cas. Nature Biotechnology. 31: 807-9. PMID 24022156 DOI: 10.1038/Nbt.2684  0.312
2013 Beumer KJ, Trautman JK, Christian M, Dahlem TJ, Lake CM, Hawley RS, Grunwald DJ, Voytas DF, Carroll D. Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila. G3 (Bethesda, Md.). 3: 1717-25. PMID 23979928 DOI: 10.1534/G3.113.007260  0.459
2013 Cho SW, Lee J, Carroll D, Kim JS, Lee J. Heritable gene knockout in Caenorhabditis elegans by direct injection of Cas9-sgRNA ribonucleoproteins. Genetics. 195: 1177-80. PMID 23979576 DOI: 10.1534/Genetics.113.155853  0.337
2013 Beumer KJ, Trautman JK, Mukherjee K, Carroll D. Donor DNA Utilization during Gene Targeting with Zinc-finger Nucleases. G3 (Bethesda, Md.). PMID 23550125 DOI: 10.1534/G3.112.005439  0.695
2013 Carroll D. Gene editing: Re-writing genomes with targetable nucleases Drug Discovery World. 14.  0.339
2012 Carroll D. A CRISPR approach to gene targeting. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 1658-60. PMID 22945229 DOI: 10.1038/Mt.2012.171  0.399
2011 Carroll D. Genome engineering with zinc-finger nucleases. Genetics. 188: 773-82. PMID 21828278 DOI: 10.1534/Genetics.111.131433  0.476
2011 Carroll D. Zinc-finger nucleases: a panoramic view. Current Gene Therapy. 11: 2-10. PMID 21182468 DOI: 10.2174/156652311794520076  0.435
2010 Takasu Y, Kobayashi I, Beumer K, Uchino K, Sezutsu H, Sajwan S, Carroll D, Tamura T, Zurovec M. Targeted mutagenesis in the silkworm Bombyx mori using zinc finger nuclease mRNA injection. Insect Biochemistry and Molecular Biology. 40: 759-65. PMID 20692340 DOI: 10.1016/J.Ibmb.2010.07.012  0.393
2010 Carroll D, Beumer KJ, Trautman JK. High-efficiency gene targeting in Drosophila with zinc finger nucleases. Methods in Molecular Biology (Clifton, N.J.). 649: 271-80. PMID 20680841 DOI: 10.1007/978-1-60761-753-2_17  0.459
2010 Kim JS, Lee HJ, Carroll D. Genome editing with modularly assembled zinc-finger nucleases. Nature Methods. 7: 91; author reply 91-. PMID 20111032 DOI: 10.1038/Nmeth0210-91A  0.307
2009 Mittelman D, Moye C, Morton J, Sykoudis K, Lin Y, Carroll D, Wilson JH. Zinc-finger directed double-strand breaks within CAG repeat tracts promote repeat instability in human cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 9607-12. PMID 19482946 DOI: 10.1073/Pnas.0902420106  0.438
2009 Bozas A, Beumer KJ, Trautman JK, Carroll D. Genetic analysis of zinc-finger nuclease-induced gene targeting in Drosophila. Genetics. 182: 641-51. PMID 19380480 DOI: 10.1534/Genetics.109.101329  0.432
2009 Liu JL, Wu Z, Nizami Z, Deryusheva S, Rajendra TK, Beumer KJ, Gao H, Matera AG, Carroll D, Gall JG. Coilin is essential for Cajal body organization in Drosophila melanogaster. Molecular Biology of the Cell. 20: 1661-70. PMID 19158395 DOI: 10.1091/Mbc.E08-05-0525  0.328
2008 Beumer KJ, Trautman JK, Bozas A, Liu JL, Rutter J, Gall JG, Carroll D. Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases. Proceedings of the National Academy of Sciences of the United States of America. 105: 19821-6. PMID 19064913 DOI: 10.1073/Pnas.0810475105  0.451
2008 Carroll D. Progress and prospects: Zinc-finger nucleases as gene therapy agents Gene Therapy. 15: 1463-1468. PMID 18784746 DOI: 10.1038/Gt.2008.145  0.324
2008 Carroll D, Beumer KJ, Morton JJ, Bozas A, Trautman JK. Gene targeting in Drosophila and Caenorhabditis elegans with zinc-finger nucleases. Methods in Molecular Biology (Clifton, N.J.). 435: 63-77. PMID 18370068 DOI: 10.1007/978-1-59745-232-8_5  0.494
2008 Davis MW, Morton JJ, Carroll D, Jorgensen EM. Gene activation using FLP recombinase in C. elegans. Plos Genetics. 4: e1000028. PMID 18369447 DOI: 10.1371/Journal.Pgen.1000028  0.328
2006 Carroll D, Morton JJ, Beumer KJ, Segal DJ. Design, construction and in vitro testing of zinc finger nucleases. Nature Protocols. 1: 1329-41. PMID 17406419 DOI: 10.1038/Nprot.2006.231  0.452
2006 Morton J, Davis MW, Jorgensen EM, Carroll D. Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells. Proceedings of the National Academy of Sciences of the United States of America. 103: 16370-5. PMID 17060623 DOI: 10.1073/Pnas.0605633103  0.514
2006 Beumer K, Bhattacharyya G, Bibikova M, Trautman JK, Carroll D. Efficient gene targeting in Drosophila with zinc-finger nucleases. Genetics. 172: 2391-403. PMID 16452139 DOI: 10.1534/Genetics.105.052829  0.464
2005 Porteus MH, Carroll D. Gene targeting using zinc finger nucleases. Nature Biotechnology. 23: 967-73. PMID 16082368 DOI: 10.1038/Nbt1125  0.476
2005 Lloyd A, Plaisier CL, Carroll D, Drews GN. Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 102: 2232-7. PMID 15677315 DOI: 10.1073/Pnas.0409339102  0.38
2004 Carroll D. Using nucleases to stimulate homologous recombination. Methods in Molecular Biology (Clifton, N.J.). 262: 195-207. PMID 14769963 DOI: 10.1385/1-59259-761-0:195  0.477
2003 Bibikova M, Beumer K, Trautman JK, Carroll D. Enhancing gene targeting with designed zinc finger nucleases. Science (New York, N.Y.). 300: 764. PMID 12730594 DOI: 10.1126/Science.1079512  0.34
2002 Bibikova M, Golic M, Golic KG, Carroll D. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. Genetics. 161: 1169-75. PMID 12136019  0.35
2002 Christensen S, Pont-Kingdon G, Carroll D. Comparative studies of the endonucleases from two related Xenopus laevis retrotransposons, Tx1L and Tx2L: target site specificity and evolutionary implications. Genetica. 110: 245-56. PMID 11766845 DOI: 10.1023/A:1012704812424  0.39
2001 Costanzo V, Robertson K, Bibikova M, Kim E, Grieco D, Gottesman M, Carroll D, Gautier J. Mre11 protein complex prevents double-strand break accumulation during chromosomal DNA replication. Molecular Cell. 8: 137-47. PMID 11511367 DOI: 10.1016/S1097-2765(01)00294-5  0.426
2001 Bibikova M, Carroll D, Segal DJ, Trautman JK, Smith J, Kim YG, Chandrasegaran S. Stimulation of homologous recombination through targeted cleavage by chimeric nucleases. Molecular and Cellular Biology. 21: 289-97. PMID 11113203 DOI: 10.1128/Mcb.21.1.289-297.2001  0.45
2000 Smith J, Bibikova M, Whitby FG, Reddy AR, Chandrasegaran S, Carroll D. Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Research. 28: 3361-9. PMID 10954606 DOI: 10.1093/Nar/28.17.3361  0.443
2000 Christensen S, Pont-Kingdon G, Carroll D. Target Specificity of the Endonuclease from the Xenopus laevis Non-Long Terminal Repeat Retrotransposon, Tx1L Molecular and Cellular Biology. 20: 1219-1226. PMID 10648607 DOI: 10.1128/Mcb.20.4.1219-1226.2000  0.451
2000 Faruqi AF, Datta HJ, Carroll D, Seidman MM, Glazer PM. Triple-helix formation induces recombination in mammalian cells via a nucleotide excision repair-dependent pathway. Molecular and Cellular Biology. 20: 990-1000. PMID 10629056 DOI: 10.1128/Mcb.20.3.990-1000.2000  0.465
1999 Pont-Kingdon G, Chi E, Christensen S, Carroll D. RNA expression from a site-specific non-LTR retrotransposon microinjected into Xenopus oocytes. Genetica. 104: 67-76. PMID 9949703 DOI: 10.1023/A:1003472404777  0.346
1998 Bibikova M, Wu B, Chi E, Kim KH, Trautman JK, Carroll D. Characterization of FEN-1 from Xenopus laevis: cDNA cloning and role in DNA metabolism Journal of Biological Chemistry. 273: 34222-34229. PMID 9852084 DOI: 10.1074/Jbc.273.51.34222  0.442
1997 Segal DJ, Faruqi AF, Glazer PM, Carroll D. Processing of targeted psoralen cross-links in Xenopus oocytes. Molecular and Cellular Biology. 17: 6645-52. PMID 9343428 DOI: 10.1128/Mcb.17.11.6645  0.412
1997 Pont-Kingdon G, Chi E, Christensen S, Carroll D. Ribonucleoprotein formation by the ORF1 protein of the non-LTR retrotransposon Tx1L in Xenopus oocytes Nucleic Acids Research. 25: 3088-3094. PMID 9224609 DOI: 10.1093/Nar/25.15.3088  0.304
1997 Faruqi AF, Seidman MM, Segal DJ, Carroll D, Glazer PM. Recombination induced by triple-helix-targeted DNA damage in mammalian cells. Molecular and Cellular Biology. 16: 6820-8. PMID 8943337 DOI: 10.1128/Mcb.16.12.6820  0.443
1996 Carroll D. Homologous genetic recombination in Xenopus: mechanism and implications for gene manipulation Progress in Nucleic Acid Research and Molecular Biology. 54: 101-125. PMID 8768073 DOI: 10.1016/S0079-6603(08)60361-X  0.488
1995 Segal DJ, Carroll D. Endonuclease-induced, targeted homologous extrachromosomal recombination in Xenopus oocytes. Proceedings of the National Academy of Sciences of the United States of America. 92: 806-10. PMID 7846056 DOI: 10.1073/Pnas.92.3.806  0.477
1995 Segal DJ, Carroll D. Corrections: Endonuclease-Induced, Targeted Homologous Extrachromosomal Recombination in Xenopus Oocytes Proceedings of the National Academy of Sciences of the United States of America. 92: 3632. DOI: 10.1073/Pnas.92.8.3632A  0.358
1994 Lehman CW, Trautman JK, Carroll D. Illegitimate recombination in Xenopus: Characterization of end-joined junctions Nucleic Acids Research. 22: 434-442. PMID 8127681 DOI: 10.1093/Nar/22.3.434  0.426
1993 Lehman CW, Clemens M, Worthylake DK, Trautman JK, Carroll D. Homologous and illegitimate recombination in developing Xenopus oocytes and eggs Molecular and Cellular Biology. 13: 6897-6906. PMID 8413282 DOI: 10.1128/Mcb.13.11.6897  0.37
1993 Lehman CW, Carroll D. Isolation of Large Quantities of Functional, Cytoplasm-Free Xenopus laevis Oocyte Nuclei Analytical Biochemistry. 211: 311-319. PMID 8391226 DOI: 10.1006/Abio.1993.1275  0.332
1993 Carroll D. A Recombination Sampler Mechanisms of Eukaryotic DNA Recombination Max E. Gottesman Henry J. Vogel Bioscience. 43: 639-640. DOI: 10.2307/1312155  0.401
1993 Pont-Kingdon G, Dawson RJ, Carroll D. Intermediates in extrachromosomal homologous recombination in Xenopus laevis oocytes : characterization by electron microscopy The Embo Journal. 12: 23-34. DOI: 10.1002/J.1460-2075.1993.Tb05628.X  0.412
1992 Jeong-Yu S, Carroll D. Test of the double-strand-break repair model of recombination in Xenopus laevis oocytes. Molecular and Cellular Biology. 12: 112-119. PMID 1729593 DOI: 10.1128/Mcb.12.1.112  0.386
1992 Jeong-Yu S, Carroll D. Effect of terminal nonhomologies on homologous recombination in Xenopus laevis oocytes. Molecular and Cellular Biology. 12: 5426-5437. PMID 1448075 DOI: 10.1128/Mcb.12.12.5426  0.423
1991 Maryon E, Carroll D. Characterization of recombination intermediates from DNA injected into Xenopus laevis oocytes: evidence for a nonconservative mechanism of homologous recombination. Molecular and Cellular Biology. 11: 3278-3287. PMID 2038331 DOI: 10.1128/Mcb.11.6.3278  0.441
1991 Maryon E, Carroll D. Involvement of single-stranded tails in homologous recombination of DNA injected into Xenopus laevis oocyte nuclei. Molecular and Cellular Biology. 11: 3268-3277. PMID 2038330 DOI: 10.1128/Mcb.11.6.3268  0.421
1991 Lehman CW, Carroll D. Homologous recombination catalyzed by a nuclear extract from Xenopus oocytes Proceedings of the National Academy of Sciences of the United States of America. 88: 10840-10844. PMID 1961753 DOI: 10.1073/Pnas.88.23.10840  0.386
1991 Carroll D, Lehman CW. Chapter 24 DNA Recombination and Repair in Oocytes Eggs, and Extracts Methods in Cell Biology. 36: 467-486. PMID 1811148 DOI: 10.1016/S0091-679X(08)60292-7  0.45
1990 Sweigert SE, Carroll D. Repair and recombination of X-irradiated plasmids in Xenopus laevis oocytes. Molecular and Cellular Biology. 10: 5849-5856. PMID 2233720 DOI: 10.1128/Mcb.10.11.5849  0.396
1990 Urnes MS, Carroll D. Amylase synthesis as a simple model system for translation and hybrid arresst in Xenopus oocytes Gene. 95: 267-274. PMID 1701154 DOI: 10.1016/0378-1119(90)90370-7  0.312
1989 Maryon E, Carroll D. Degradation of linear DNA by a strand-specific exonuclease activity in Xenopus laevis oocytes. Molecular and Cellular Biology. 9: 4862-4871. PMID 2601699 DOI: 10.1128/Mcb.9.11.4862  0.447
1989 Garrett JE, Knutzon DS, Carroll D. Composite transposable elements in the Xenopus laevis genome. Molecular and Cellular Biology. 9: 3018-3027. PMID 2550791 DOI: 10.1128/Mcb.9.7.3018  0.402
1987 Grzesiuk E, Carroll D. Recombination of DNAs in Xenopus oocytes based on short homologous overlaps Nucleic Acids Research. 15: 971-985. PMID 3029712 DOI: 10.1093/Nar/15.3.971  0.471
1986 Garrett JE, Carroll D. Tx1: a transposable element from Xenopus laevis with some unusual properties. Molecular and Cellular Biology. 6: 933-941. PMID 3022140 DOI: 10.1128/Mcb.6.3.933  0.355
1986 Carroll D, Wright SH, Wolff RK, Grzesiuk E, Maryon EB. Efficient homologous recombination of linear DNA substrates after injection into Xenopus laevis oocytes. Molecular and Cellular Biology. 6: 2053-2061. PMID 2946937 DOI: 10.1128/Mcb.6.6.2053  0.475
1984 Carroll D, Garrett JE, Lam BS. Isolated clusters of paired tandemly repeated sequences in the Xenopus laevis genome. Molecular and Cellular Biology. 4: 254-259. PMID 6700590 DOI: 10.1128/Mcb.4.2.254  0.346
1984 Swindle J, Ajioka J, Dawson D, Myers R, Carroll D, Georgopoulos C. The nucleotide sequence of the Escherichia coli K12 nusB (groNB) gene Nucleic Acids Research. 12: 4977-4985. PMID 6330693 DOI: 10.1093/Nar/12.12.4977  0.332
1984 Carroll D, Wright SH, Ajioka RS, Hussey CE. Genetic recombination of Xenopus laevis 5 S DNA in bacteria. Journal of Molecular Biology. 178: 155-172. PMID 6092642 DOI: 10.1016/0022-2836(84)90137-2  0.44
1983 Young D, Carroll D. Regular arrangement of nucleosomes on 5S rRNA genes in Xenopus laevis. Molecular and Cellular Biology. 3: 720-30. PMID 6855773 DOI: 10.1128/Mcb.3.4.720  0.45
1983 Carroll D. Genetic recombination of bacteriophage lambda DNAs in Xenopus oocytes Proceedings of the National Academy of Sciences of the United States of America. 80: 6902-6906. PMID 6227916 DOI: 10.1073/Pnas.80.22.6902  0.395
1983 Lam BS, Carroll D. Tandemly repeated DNA sequences from Xenopus laevis. II. Dispersed clusters of a 388 base-pair repeating unit. Journal of Molecular Biology. 165: 587-597. PMID 6190000 DOI: 10.1016/S0022-2836(83)80268-X  0.376
1983 Lam BS, Carroll D. Tandemly repeated DNA sequences from Xenopus laevis: I. Studies on sequence organization and variation in satellite 1 DNA (741 base-pair repeat) Journal of Molecular Biology. 165: 567-585. PMID 6189999 DOI: 10.1016/S0022-2836(83)80267-8  0.457
1982 O'Neill FJ, Maryon EB, Carroll D. Isolation and characterization of defective simian virus 40 genomes which complement for infectivity. Journal of Virology. 43: 18-25. PMID 6286996 DOI: 10.1128/Jvi.43.1.18-25.1982  0.398
1980 Carroll D, Ajioka RS. Recombination of a eukaryotic DNA in bacteria. Gene. 10: 273-281. PMID 6254845 DOI: 10.1016/0378-1119(80)90056-6  0.459
1980 Carroll D, Ajioka RS, Georgopoulos C. Bacteriophage lambda cloning vehicles for studies of genetic recombination. Gene. 10: 261-271. PMID 6254844 DOI: 10.1016/0378-1119(80)90055-4  0.419
1978 Carroll D, O'Neill FJ. Genome maps of simian virus 40 defectives propagated in human glioblastoma cells. Virology. 87: 120-9. PMID 208262 DOI: 10.1016/0042-6822(78)90164-2  0.412
1976 Carroll D, Brown DD. Repeating units of Xenopus laevis oocyte-type 5S DNA are heterogeneous in length. Cell. 7: 467-75. PMID 986247 DOI: 10.1016/0092-8674(76)90198-7  0.552
1976 Carroll D, Brown DD. Adjacent repeating units of Xenopus laevis 5S DNA can be heterogeneous in length. Cell. 7: 477-86. PMID 782719 DOI: 10.1016/0092-8674(76)90199-9  0.59
1974 Wellauer PK, Reeder RH, Carroll D, Brown DD, Deutch A, Higashinakagawa T, Dawid IB. Amplified ribosomal DNA from Xenopus laevis has heterogeneous spacer lengths. Proceedings of the National Academy of Sciences of the United States of America. 71: 2823-7. PMID 4527647 DOI: 10.1073/Pnas.71.7.2823  0.683
1972 Carroll D, Botchan MR. Competition between pentalysine and actinomycin D for binding to DNA. Biochemical and Biophysical Research Communications. 46: 1661-7. PMID 5062742 DOI: 10.1016/0006-291X(72)90803-0  0.329
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