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Kristian A. Stevens, Ph.D. - Publications

Affiliations: 
2014 Computer Science University of California, Davis, Davis, CA 
Area:
Computer Science, Bioinformatics Biology
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Alabi OJ, Stevens K, Oladokun JO, Villegas C, Hwang MS, Al Rwahnih M, Tian T, Hernandez I, Ouro-Djobo A, Sétamou M, Jifon JL. Discovery and characterization of two highly divergent variants of a novel potyvirus species infecting Madagascar periwinkle ( L.). Plant Disease. PMID 38568788 DOI: 10.1094/PDIS-02-24-0459-RE  0.46
2022 Britt K, Gebben S, Levy A, Achor D, Sieburth P, Stevens K, Al Rwahnih M, Batuman O. Analysis of Citrus Tristeza Virus Incidences within Asian Citrus Psyllid () Populations in Florida via High-Throughput Sequencing. Insects. 13. PMID 35323573 DOI: 10.3390/insects13030275  0.332
2021 Britt K, Stevens K, Gebben S, Levy A, Al Rwahnih M, Batuman O. Partial Genome Sequence of a Novel Reo-Like Virus Detected in Asian Citrus Psyllid (Diaphorina citri) Populations from Florida Citrus Groves. Microbiology Resource Announcements. 10: e0056321. PMID 34435852 DOI: 10.1128/MRA.00563-21  0.357
2021 Carvalho Costa L, Stevens K, Hu X, Fuchs M, Al Rwahnih M, Diaz-Lara A, McFarland C, Foster J, Hurtado-Gonzales OP. Identification and characterization of a novel virus associated with an eriophyid mite in extracts of fruit trees leaves. Archives of Virology. PMID 34292373 DOI: 10.1007/s00705-021-05174-z  0.31
2020 Diaz-Lara A, Mosier NJ, Stevens K, Keller KE, Martin RR. Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome. Cytogenetic and Genome Research. PMID 32683370 DOI: 10.1159/000509845  0.401
2020 Weiss M, Sniezko RA, Puiu D, Crepeau MW, Stevens K, Salzberg SL, Langley CH, Neale DB, De La Torre AR. Genomic basis of white pine blister rust quantitative disease resistance and its relationship with qualitative resistance. The Plant Journal : For Cell and Molecular Biology. PMID 32654344 DOI: 10.1111/Tpj.14928  0.376
2019 Trouern-Trend A, Falk T, Zaman S, Caballero M, Neale DB, Langley CH, Dandekar A, Stevens KA, Wegrzyn JL. Comparative Genomics of Six Juglans Species Reveals Disease-associated Gene Family Contractions. The Plant Journal : For Cell and Molecular Biology. PMID 31823432 DOI: 10.1111/Tpj.14630  0.453
2019 Rwahnih MA, Alabi OJ, Hwang MS, Stevens K, Golino D. Identification and genomic characterization of grapevine Kizil Sapak virus, a novel grapevine-infecting member of the family Betaflexiviridae. Archives of Virology. PMID 31616995 DOI: 10.1007/S00705-019-04434-3  0.489
2019 Diaz-Lara A, Navarro B, Di Serio F, Stevens K, Hwang MS, Kohl J, Vu ST, Falk BW, Golino D, Al Rwahnih M. Two Novel Negative-Sense RNA Viruses Infecting Grapevine Are Members of a Newly Proposed Genus within the Family Phenuiviridae. Viruses. 11. PMID 31357479 DOI: 10.3390/V11080685  0.359
2018 Al Rwahnih M, Rowhani A, Westrick N, Stevens K, Diaz-Lara A, Trouillas FP, Preece J, Kallsen C, Farrar K, Golino D. Discovery of Viruses and Virus-Like Pathogens in Pistachio using High-Throughput Sequencing. Plant Disease. 102: 1419-1425. PMID 30673557 DOI: 10.1094/Pdis-12-17-1988-Re  0.395
2018 Diaz-Lara A, Klaassen V, Stevens K, Sudarshana MR, Rowhani A, Maree HJ, Chooi KM, Blouin AG, Habili N, Song Y, Aram K, Arnold K, Cooper ML, Wunderlich L, Battany MC, et al. Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design. Plos One. 13: e0208862. PMID 30540844 DOI: 10.1371/Journal.Pone.0208862  0.409
2018 Marrano A, Martínez-García PJ, Bianco L, Sideli GM, Di Pierro EA, Leslie CA, Stevens KA, Crepeau MW, Troggio M, Langley CH, Neale DB. A new genomic tool for walnut (Juglans regia L.): development and validation of the high-density Axiom™ J. regia 700K SNP genotyping array. Plant Biotechnology Journal. PMID 30515952 DOI: 10.1111/Pbi.13034  0.458
2018 De La Torre AR, Puiu D, Crepeau MW, Stevens K, Salzberg SL, Langley CH, Neale DB. Genomic architecture of complex traits in loblolly pine. The New Phytologist. PMID 30318590 DOI: 10.1111/Nph.15535  0.471
2018 Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH. Genomic Variation Among and Within Six Species. G3 (Bethesda, Md.). PMID 29792315 DOI: 10.1534/G3.118.200030  0.543
2017 Zimin AV, Stevens KA, Crepeau MW, Puiu D, Wegrzyn JL, Yorke JA, Langley CH, Neale DB, Salzberg SL. Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. Gigascience. 6: 1. PMID 29020755 DOI: 10.1093/Gigascience/Gix072  0.438
2017 Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, et al. The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. G3 (Bethesda, Md.). PMID 28751502 DOI: 10.1534/G3.117.300078  0.564
2017 Zimin AV, Stevens KA, Crepeau MW, Puiu D, Wegrzyn JL, Yorke JA, Langley CH, Neale DB, Salzberg SL. An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. Gigascience. 6: 1-4. PMID 28369353 DOI: 10.1093/Gigascience/Giw016  0.438
2017 Crepeau MW, Langley CH, Stevens K. From Pine Cones to Read Clouds: Re-scaffolding the Mega-genome of Sugar Pine (Pinus lambertiana). G3 (Bethesda, Md.). PMID 28341701 DOI: 10.1534/G3.117.040055  0.528
2016 Gonzalez-Ibeas D, Martinez-Garcia PJ, Famula RA, Delfino-Mix A, Stevens KA, Loopstra CA, Langley CH, Neale DB, Wegrzyn JL. Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). G3 (Bethesda, Md.). PMID 27799338 DOI: 10.1534/G3.116.032805  0.536
2016 Stevens KA, Wegrzyn J, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeaz D, Koriabine M, Holtz-Morris A, Martinez-Garcia P, Sezen U, Marcais G, Jermstad K, McGuire P, et al. Sequence of the Sugar Pine Megagenome. Genetics. PMID 27794028 DOI: 10.1534/Genetics.116.193227  0.552
2016 Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K, Langley CH, Pellegrini M, Salzberg SL. First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae). G3 (Bethesda, Md.). PMID 27621377 DOI: 10.1534/G3.116.030411  0.541
2016 Martínez-García PJ, Crepeau MW, Puiu D, Gonzalez-Ibeas D, Whalen J, Stevens KA, Paul R, Butterfield TS, Britton MT, Reagan RL, Chakraborty S, Walawage SL, Vasquez-Gross HA, Cardeno C, Famula RA, et al. The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of nonstructural polyphenols. The Plant Journal : For Cell and Molecular Biology. PMID 27145194 DOI: 10.1111/Tpj.13207  0.55
2015 Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, Langley CH, Pool JE. The Drosophila genome nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population. Genetics. 199: 1229-41. PMID 25631317 DOI: 10.1534/Genetics.115.174664  0.518
2014 Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, et al. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics. 196: 891-909. PMID 24653211 DOI: 10.1534/Genetics.113.159996  0.525
2014 Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Sequencing and assembly of the 22-gb loblolly pine genome. Genetics. 196: 875-90. PMID 24653210 DOI: 10.1534/Genetics.113.159715  0.544
2014 Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, et al. Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biology. 15: R59. PMID 24647006 DOI: 10.1186/Gb-2014-15-3-R59  0.571
2013 Wegrzyn JL, Lin BY, Zieve JJ, Dougherty WM, Martínez-García PJ, Koriabine M, Holtz-Morris A, deJong P, Crepeau M, Langley CH, Puiu D, Salzberg SL, Neale DB, Stevens KA. Insights into the loblolly pine genome: characterization of BAC and fosmid sequences. Plos One. 8: e72439. PMID 24023741 DOI: 10.1371/Journal.Pone.0072439  0.558
2013 Martínez-García PJ, Stevens KA, Wegrzyn JL, Liechty J, Crepeau M, Langley CH, Neale DB. Combination of multipoint maximum likelihood (MML) and regression mapping algorithms to construct a high-density genetic linkage map for loblolly pine (Pinus taeda L.) Tree Genetics and Genomes. 9: 1529-1535. DOI: 10.1007/S11295-013-0646-4  0.364
2012 Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. Plos Genetics. 8: e1003080. PMID 23284287 DOI: 10.1371/Journal.Pgen.1003080  0.434
2012 Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018  0.493
2011 Schrider DR, Stevens K, Cardeño CM, Langley CH, Hahn MW. Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. Genome Research. 21: 2087-95. PMID 22135405 DOI: 10.1101/Gr.116434.110  0.438
2011 Langley CH, Crepeau M, Cardeno C, Corbett-Detig R, Stevens K. Circumventing heterozygosity: sequencing the amplified genome of a single haploid Drosophila melanogaster embryo. Genetics. 188: 239-46. PMID 21441209 DOI: 10.1534/Genetics.111.127530  0.545
2009 Kao WC, Stevens K, Song YS. BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing. Genome Research. 19: 1884-95. PMID 19661376 DOI: 10.1101/Gr.095299.109  0.396
2007 Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310  0.527
2004 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Stevens K, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426  0.448
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