| Year |
Citation |
Score |
| 2014 |
Vidangos NK, Heideker J, Lyubimov A, Lamers M, Huo Y, Pelton JG, Ton J, Gralla J, Berger J, Wemmer DE. DNA recognition by a σ(54) transcriptional activator from Aquifex aeolicus. Journal of Molecular Biology. 426: 3553-68. PMID 25158097 DOI: 10.1016/J.Jmb.2014.08.009 |
0.561 |
|
| 2010 |
Tran K, Gralla JD. The TFIIB tip domain couples transcription initiation to events involved in RNA processing. The Journal of Biological Chemistry. 285: 39580-7. PMID 20880846 DOI: 10.1074/Jbc.M110.171850 |
0.629 |
|
| 2009 |
Altendorf K, Booth IR, Gralla J, Greie JC, Rosenthal AZ, Wood JM. Osmotic Stress. Ecosal Plus. 3. PMID 26443764 DOI: 10.1128/ecosalplus.5.4.5 |
0.45 |
|
| 2008 |
Gralla JD, Huo YX. Remodeling and activation of Escherichia coli RNA polymerase by osmolytes. Biochemistry. 47: 13189-96. PMID 19053283 DOI: 10.1021/bi801075x |
0.384 |
|
| 2008 |
Huo YX, Rosenthal AZ, Gralla JD. General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C-terminal domain. Molecular Microbiology. 70: 369-78. PMID 18761624 DOI: 10.1111/j.1365-2958.2008.06412.x |
0.579 |
|
| 2008 |
Tran K, Gralla JD. Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip. The Journal of Biological Chemistry. 283: 15665-71. PMID 18411280 DOI: 10.1074/Jbc.M801439200 |
0.625 |
|
| 2008 |
Rosenthal AZ, Kim Y, Gralla JD. Regulation of transcription by acetate in Escherichia coli: in vivo and in vitro comparisons. Molecular Microbiology. 68: 907-17. PMID 18331469 DOI: 10.1111/j.1365-2958.2008.06186.x |
0.652 |
|
| 2008 |
Rosenthal AZ, Kim Y, Gralla JD. Poising of Escherichia coli RNA polymerase and its release from the sigma 38 C-terminal tail for osmY transcription. Journal of Molecular Biology. 376: 938-49. PMID 18201723 DOI: 10.1016/j.jmb.2007.12.037 |
0.605 |
|
| 2006 |
Kim Y, Lew CM, Gralla JD. Escherichia coli pfs transcription: regulation and proposed roles in autoinducer-2 synthesis and purine excretion. Journal of Bacteriology. 188: 7457-63. PMID 16950920 DOI: 10.1128/Jb.00868-06 |
0.72 |
|
| 2006 |
Gralla JD, Vargas DR. Potassium glutamate as a transcriptional inhibitor during bacterial osmoregulation. The Embo Journal. 25: 1515-21. PMID 16541105 DOI: 10.1038/sj.emboj.7601041 |
0.375 |
|
| 2006 |
Rosenthal AZ, Hu M, Gralla JD. Osmolyte-induced transcription: -35 region elements and recognition by sigma38 (rpoS). Molecular Microbiology. 59: 1052-61. PMID 16420371 DOI: 10.1111/j.1365-2958.2005.04999.x |
0.654 |
|
| 2005 |
Lin YC, Choi WS, Gralla JD. TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape. Nature Structural & Molecular Biology. 12: 603-7. PMID 15937491 DOI: 10.1038/Nsmb949 |
0.713 |
|
| 2005 |
Lin YC, Gralla JD. Stimulation of the XPB ATP-dependent helicase by the beta subunit of TFIIE. Nucleic Acids Research. 33: 3072-81. PMID 15917439 DOI: 10.1093/Nar/Gki623 |
0.504 |
|
| 2005 |
Gralla JD. Escherichia coli ribosomal RNA transcription: regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein. Molecular Microbiology. 55: 973-7. PMID 15686546 DOI: 10.1111/j.1365-2958.2004.04455.x |
0.382 |
|
| 2004 |
Lew CM, Gralla JD. Nucleotide-dependent isomerization of Escherichia coli RNA polymerase. Biochemistry. 43: 12660-6. PMID 15449955 DOI: 10.1021/Bi0492814 |
0.771 |
|
| 2004 |
Choi WS, Lin YC, Gralla JD. The Schizosaccharomyces pombe open promoter bubble: mammalian-like arrangement and properties. Journal of Molecular Biology. 340: 981-9. PMID 15236961 DOI: 10.1016/J.Jmb.2004.04.075 |
0.703 |
|
| 2004 |
Lee SJ, Gralla JD. Osmo-regulation of bacterial transcription via poised RNA polymerase. Molecular Cell. 14: 153-62. PMID 15099515 DOI: 10.1016/S1097-2765(04)00202-3 |
0.599 |
|
| 2004 |
Lew CM, Gralla JD. Mechanism of stimulation of ribosomal promoters by binding of the +1 and +2 nucleotides. The Journal of Biological Chemistry. 279: 19481-5. PMID 15010465 DOI: 10.1074/Jbc.M401285200 |
0.762 |
|
| 2003 |
Fenton MS, Gralla JD. Roles for inhibitory interactions in the use of the -10 promoter element by sigma 70 holoenzyme. The Journal of Biological Chemistry. 278: 39669-74. PMID 12902332 DOI: 10.1074/Jbc.M307412200 |
0.796 |
|
| 2003 |
Lee SJ, Gralla JD. Open complex formation in vitro by sigma38 (rpoS) RNA polymerase: roles for region 2 amino acids. Journal of Molecular Biology. 329: 941-8. PMID 12798684 DOI: 10.1016/S0022-2836(03)00369-3 |
0.598 |
|
| 2003 |
Fenton MS, Gralla JD. Effect of DNA bases and backbone on sigma70 holoenzyme binding and isomerization using fork junction probes. Nucleic Acids Research. 31: 2745-50. PMID 12771200 DOI: 10.1093/Nar/Gkg400 |
0.793 |
|
| 2002 |
Lee SJ, Gralla JD. Promoter use by sigma 38 (rpoS) RNA polymerase. Amino acid clusters for DNA binding and isomerization. The Journal of Biological Chemistry. 277: 47420-7. PMID 12351645 DOI: 10.1074/Jbc.M208363200 |
0.605 |
|
| 2002 |
Lew CM, Gralla JD. New roles for conserved regions within a sigma 54-dependent enhancer-binding protein. The Journal of Biological Chemistry. 277: 41517-24. PMID 12186874 DOI: 10.1074/Jbc.M206912200 |
0.686 |
|
| 2002 |
Choi WS, Yan M, Nusinow D, Gralla JD. In vitro transcription and start site selection in Schizosaccharomyces pombe. Journal of Molecular Biology. 319: 1005-13. PMID 12079343 DOI: 10.1016/S0022-2836(02)00329-7 |
0.633 |
|
| 2001 |
Fenton MS, Gralla JD. Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization. Proceedings of the National Academy of Sciences of the United States of America. 98: 9020-5. PMID 11470900 DOI: 10.1073/Pnas.161085798 |
0.816 |
|
| 2001 |
Lee SJ, Gralla JD. Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotides. The Journal of Biological Chemistry. 276: 30064-71. PMID 11375988 DOI: 10.1074/Jbc.M102886200 |
0.652 |
|
| 2001 |
Wang L, Gralla JD. Roles for the C-terminal Region of Sigma 54 in Transcriptional Silencing and DNA Binding Journal of Biological Chemistry. 276: 8979-8986. PMID 11124262 DOI: 10.1074/jbc.M009587200 |
0.449 |
|
| 2001 |
Wolner BS, Gralla JD. TATA-flanking sequences influence the rate and stability of TATA-binding protein and TFIIB binding. The Journal of Biological Chemistry. 276: 6260-6. PMID 11096089 DOI: 10.1074/Jbc.M008273200 |
0.773 |
|
| 2000 |
Guo Y, Lew CM, Gralla JD. Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control. Genes & Development. 14: 2242-55. PMID 10970887 DOI: 10.1101/gad.794800 |
0.771 |
|
| 2000 |
Wolner BS, Gralla JD. Roles for non-TATA core promoter sequences in transcription and factor binding. Molecular and Cellular Biology. 20: 3608-15. PMID 10779350 DOI: 10.1128/Mcb.20.10.3608-3615.2000 |
0.8 |
|
| 2000 |
Fenton MS, Lee SJ, Gralla JD. Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70. The Embo Journal. 19: 1130-7. PMID 10698953 DOI: 10.1093/Emboj/19.5.1130 |
0.791 |
|
| 1999 |
Wang L, Guo Y, Gralla JD. Regulation of sigma 54-dependent transcription by core promoter sequences: Role of -12 region nucleotides Journal of Bacteriology. 181: 7558-7565. PMID 10601214 DOI: 10.1128/jb.181.24.7558-7565.1999 |
0.495 |
|
| 1999 |
Yan M, Gralla JD. The use of ATP and initiating nucleotides during postrecruitment steps at the activated adenovirus E4 promoter Journal of Biological Chemistry. 274: 34819-34824. PMID 10574953 DOI: 10.1074/jbc.274.49.34819 |
0.373 |
|
| 1999 |
Guo Y, Wang L, Gralla JD. A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor Embo Journal. 18: 3736-3745. PMID 10393188 DOI: 10.1093/emboj/18.13.3736 |
0.5 |
|
| 1999 |
Yean D, Gralla JD. Transcription reinitiation rate: A potential role for TATA box stabilization of the TFIID:TFIIA:DNA complex Nucleic Acids Research. 27: 831-838. PMID 9889280 DOI: 10.1093/nar/27.3.831 |
0.366 |
|
| 1998 |
Wang L, Gralla JD. Multiple in vivo roles for the -12-region elements of sigma 54 promoters Journal of Bacteriology. 180: 5626-5631. PMID 9791111 DOI: 10.1128/jb.180.21.5626-5631.1998 |
0.409 |
|
| 1998 |
Syed A, Gralla JD. Identification of an N-terminal region of sigma 54 required for enhancer responsiveness Journal of Bacteriology. 180: 5619-5625. PMID 9791110 DOI: 10.1128/jb.180.21.5619-5625.1998 |
0.4 |
|
| 1998 |
Guo Y, Gralla JD. Promoter opening via a DNA fork junction binding activity Proceedings of the National Academy of Sciences of the United States of America. 95: 11655-11660. PMID 9751721 DOI: 10.1073/pnas.95.20.11655 |
0.478 |
|
| 1998 |
Pérez-Rueda E, Gralla JD, Collado-Vides J. Genomic position analyses and the transcription machinery Journal of Molecular Biology. 275: 165-170. PMID 9466899 DOI: 10.1006/jmbi.1997.1465 |
0.406 |
|
| 1997 |
Wolner BS, Gralla JD. Promoter activation via a cyclic AMP response element in vitro. The Journal of Biological Chemistry. 272: 32301-7. PMID 9405436 DOI: 10.1074/Jbc.272.51.32301 |
0.795 |
|
| 1997 |
Yan M, Gralla JD. Multiple ATP-dependent steps in RNA polymerase II promoter melting and initiation Embo Journal. 16: 7457-7467. PMID 9405374 DOI: 10.1093/emboj/16.24.7457 |
0.408 |
|
| 1997 |
Wang JT, Syed A, Gralla JD. Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: Roles for DNA and protein determinants Proceedings of the National Academy of Sciences of the United States of America. 94: 9538-9543. PMID 9275158 DOI: 10.1073/pnas.94.18.9538 |
0.465 |
|
| 1997 |
Yean D, Gralla J. Transcription reinitiation rate: A special role for the TATA box Molecular and Cellular Biology. 17: 3809-3816. PMID 9199314 DOI: 10.1128/Mcb.17.7.3809 |
0.524 |
|
| 1997 |
Syed A, Gralla JD. Isolation and properties of enhancer-bypass mutants of sigma 54 Molecular Microbiology. 23: 987-995. PMID 9076735 DOI: 10.1046/j.1365-2958.1997.2851651.x |
0.335 |
|
| 1997 |
Guo Y, Gralla JD. DNA-binding determinants of sigma 54 as deduced from libraries of mutations Journal of Bacteriology. 179: 1239-1245. PMID 9023207 DOI: 10.1128/jb.179.4.1239-1245.1997 |
0.36 |
|
| 1996 |
Wang JT, Gralla JD. The transcription initiation pathway of sigma 54 mutants that bypass the enhancer protein requirement: Implications for the mechanism of activation Journal of Biological Chemistry. 271: 32707-32713. PMID 8955103 DOI: 10.1074/jbc.271.51.32707 |
0.385 |
|
| 1996 |
Gralla JD. Activation and repression of E. coli promoters Current Opinion in Genetics and Development. 6: 526-530. PMID 8939721 DOI: 10.1016/S0959-437X(96)80079-7 |
0.463 |
|
| 1996 |
Yean D, Gralla J. Transcription activation by GC-boxes: Evaluation of kinetic and equilibrium contributions Nucleic Acids Research. 24: 2723-2729. PMID 8759003 DOI: 10.1093/Nar/24.14.2723 |
0.507 |
|
| 1996 |
Jiang Y, Yan M, Gralla JD. A three-step pathway of transcription initiation leading to promoter clearance at an activated RNA polymerase II promoter Molecular and Cellular Biology. 16: 1614-1621. PMID 8657136 DOI: 10.1128/Mcb.16.4.1614 |
0.556 |
|
| 1995 |
Jiang Y, Gralla JD. Nucleotide requirements for activated RNA polymerase II open complex formation in vitro Journal of Biological Chemistry. 270: 1277-1281. PMID 7836391 DOI: 10.1074/Jbc.270.3.1277 |
0.517 |
|
| 1995 |
Jiang Y, Yan M, Gralla JD. Abortive initiation and first bond formation at an activated adenovirus E4 promoter Journal of Biological Chemistry. 270: 27332-27338. PMID 7592996 DOI: 10.1074/Jbc.270.45.27332 |
0.457 |
|
| 1995 |
Tintut Y, Wang JT, Gralla JD. Abortive cycling and the release of polymerase for elongation at the σ54- dependent glnAp2 promoter Journal of Biological Chemistry. 270: 24392-24398. PMID 7592652 DOI: 10.1074/jbc.270.41.24392 |
0.398 |
|
| 1995 |
Tintut Y, Gralla JD. PCR mutagenesis identifies a polymerase-binding sequence of sigma 54 that includes a sigma 70 homology region Journal of Bacteriology. 177: 5818-5825. PMID 7592329 DOI: 10.1128/jb.177.20.5818-5825.1995 |
0.406 |
|
| 1995 |
Tintut Y, Wang JT, Gralla JD. A novel bacterial transcription cycle involving σ54 Genes and Development. 9: 2305-2313. PMID 7557383 DOI: 10.1101/gad.9.18.2305 |
0.5 |
|
| 1995 |
Wang JT, Syed A, Hsieh M, Gralla JD. Converting Escherichia coli RNA polymerase into an enhancer-responsive enzyme: role of an NH2-terminal leucine patch in sigma 54. Science (New York, N.Y.). 270: 992-4. PMID 7481805 DOI: 10.1126/science.270.5238.992 |
0.354 |
|
| 1994 |
Hsieh M, Tintut Y, Gralla JD. Functional roles for the glutamines within the glutamine-rich region of the transcription factor σ54 Journal of Biological Chemistry. 269: 373-378. PMID 8276822 |
0.469 |
|
| 1994 |
Hsieh M, Gralla JD. Analysis of the N-terminal leucine heptad and hexad repeats of sigma 54 Journal of Molecular Biology. 239: 15-24. PMID 8196043 DOI: 10.1006/jmbi.1994.1347 |
0.342 |
|
| 1994 |
Tintut Y, Wong C, Jiang Y, Hsieh M, Gralla JD. RNA polymerase binding using a strongly acidic hydrophobic-repeat region of σ54 Proceedings of the National Academy of Sciences of the United States of America. 91: 2120-2124. PMID 8134358 DOI: 10.1073/Pnas.91.6.2120 |
0.534 |
|
| 1994 |
Jiang Y, Triezenberg SJ, Gralla JD. Defective transcriptional activation by diverse VP16 mutants associated with a common inability to form open promoter complexes Journal of Biological Chemistry. 269: 5505-5508. PMID 8119881 |
0.341 |
|
| 1994 |
Wong C, Tintut Y, Gralla JD. The domain structure of sigma 54 as determined by analysis of a set of deletion mutants Journal of Molecular Biology. 236: 81-90. PMID 8107127 DOI: 10.1006/jmbi.1994.1120 |
0.436 |
|
| 1994 |
Chang C, Gralla JD. A critical role for chromatin in mounting a synergistic transcriptional response to GAL4-VP16 Molecular and Cellular Biology. 14: 5175-5181. PMID 8035798 DOI: 10.1128/MCB.14.8.5175 |
0.37 |
|
| 1994 |
Ellinger T, Behnke D, Knaus R, Bujard H, Gralla JD. Context-dependent effects of upstream A-tracts: Stimulation or inhibition of Escherichia coli promoter function Journal of Molecular Biology. 239: 466-475. PMID 8006962 DOI: 10.1006/jmbi.1994.1389 |
0.439 |
|
| 1994 |
Ellinger T, Behnke D, Bujard H, Gralla JD. Stalling of Escherichia coli RNA polymerase in the +6 to +12 region in vivo is associated with tight binding to consensus promoter elements Journal of Molecular Biology. 239: 455-465. PMID 8006961 DOI: 10.1006/jmbi.1994.1388 |
0.435 |
|
| 1994 |
Jiang Y, Gralla JD. RNA polymerase II phosphorylation: Uncoupling from GAL4-VP16 directed open complex formation and transcription in a reconstituted system Nucleic Acids Research. 22: 4958-4962. PMID 7800486 DOI: 10.1093/Nar/22.23.4958 |
0.476 |
|
| 1993 |
Jiang Y, Smale ST, Gralla JD. A common ATP requirement for open complex formation and transcription at promoters containing initiator or TATA elements. The Journal of Biological Chemistry. 268: 6535-40. PMID 8454623 |
0.452 |
|
| 1993 |
Jiang Y, Gralla JD. Uncoupling of Initiation and Reinitiation Rates during HeLa RNA Polymerase II Transcription in Vitro Molecular and Cellular Biology. 13: 4572-4577. PMID 8336702 DOI: 10.1128/Mcb.13.8.4572 |
0.469 |
|
| 1993 |
Gralla JD. Opening promoters for m-RNA transcription Cellular and Molecular Biology Research. 39: 319-322. PMID 8312966 |
0.433 |
|
| 1993 |
Chang C, Gralla JD. Properties of initiator-associated transcription mediated by GAL4-VP16 Molecular and Cellular Biology. 13: 7469-7475. PMID 8246964 DOI: 10.1128/MCB.13.12.7469 |
0.446 |
|
| 1992 |
Wang W, Gralla JD, Carey M. The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA Genes and Development. 6: 1716-1727. PMID 1516830 DOI: 10.1101/gad.6.9.1716 |
0.348 |
|
| 1992 |
Wong C, Gralla JD. A role for the acidic trimer repeat region of transcription factor σ54 in setting the rate and temperature dependence of promoter melting in vivo Journal of Biological Chemistry. 267: 24762-24768. PMID 1447214 |
0.338 |
|
| 1992 |
Ohlsen KL, Gralla JD. Interrelated effects of DNA supercoiling, ppGpp, and low salt on melting within the Escherichia coli ribosomal RNA rrnB P1 promoter Molecular Microbiology. 6: 2243-2251. PMID 1406265 DOI: 10.1111/j.1365-2958.1992.tb01400.x |
0.403 |
|
| 1992 |
Ohlsen KL, Gralla JD. DNA melting within stable closed complexes at the Escherichia coli rrnB P1 promoter Journal of Biological Chemistry. 267: 19813-19818. PMID 1400295 |
0.314 |
|
| 1992 |
Ohlsen KL, Gralla JD. Melting during steady-state transcription of the rrnB P1 promoter in vivo and in vitro Journal of Bacteriology. 174: 6071-6075. PMID 1400157 DOI: 10.1128/jb.174.19.6071-6075.1992 |
0.379 |
|
| 1992 |
Hoang AT, Wang W, Gralla JD. The replication activation potential of selected RNA polymerase II promoter elements at the simian virus 40 origin Molecular and Cellular Biology. 12: 3087-3093. PMID 1320196 DOI: 10.1128/MCB.12.7.3087 |
0.39 |
|
| 1992 |
Wang W, Carey M, Gralla JD. Polymerase II promoter activation: Closed complex formation and ATP-driven start site opening Science. 255: 450-453. PMID 1310361 DOI: 10.1126/science.1310361 |
0.418 |
|
| 1991 |
Collado-Vides J, Magasanik B, Gralla JD. Control site location and transcriptional regulation in Escherichia coli. Microbiological Reviews. 55: 371-94. PMID 1943993 DOI: 10.1128/mmbr.55.3.371-394.1991 |
0.373 |
|
| 1991 |
Wang W, Gralla JD. Differential ability of proximal and remote element pairs to cooperate in activating RNA polymerase II transcription Molecular and Cellular Biology. 11: 4561-4571. PMID 1875939 DOI: 10.1128/MCB.11.9.4561 |
0.433 |
|
| 1990 |
Zhang L, Gralla JD. In situ nucleoprotein structure involving origin-proximal SV40 DNA control elements Nucleic Acids Research. 18: 1797-1803. PMID 2159622 DOI: 10.1093/nar/18.7.1797 |
0.368 |
|
| 1990 |
Buchanan RL, Gralla JD. Programmed factor binding to simian virus 40 GC-box replication and transcription control sequences Journal of Virology. 64: 347-353. PMID 2152821 DOI: 10.1128/jvi.64.1.347-353.1990 |
0.369 |
|
| 1989 |
Sasse-Dwight S, Gralla JD. KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo Journal of Biological Chemistry. 264: 8074-8081. PMID 2722774 |
0.448 |
|
| 1989 |
Zhang L, Gralla JD. Micrococcal nuclease as a probe for bound and distorted DNA in lac transcription and repression complexes Nucleic Acids Research. 17: 5017-5028. PMID 2668875 DOI: 10.1093/nar/17.13.5017 |
0.497 |
|
| 1989 |
Zhang L, Gralla JD. In situ nucleoprotein structure at the SV40 major late promoter: melted and wrapped DNA flank the start site Genes & Development. 3: 1814-1822. PMID 2558048 DOI: 10.1101/gad.3.11.1814 |
0.425 |
|
| 1989 |
Meiklejohn AL, Gralla JD. Activation of the lac promoter and its variants. Synergistic effects of catabolite activator protein and supercoiling in vitro Journal of Molecular Biology. 207: 661-673. PMID 2547970 DOI: 10.1016/0022-2836(89)90236-2 |
0.473 |
|
| 1988 |
Flashner Y, Gralla JD. DNA dynamic flexibility and protein recognition: Differential stimulation by bacterial histone-like protein HU Cell. 54: 713-721. PMID 3044609 DOI: 10.1016/S0092-8674(88)80016-3 |
0.316 |
|
| 1988 |
Sasse-Dwight S, Gralla JD. Probing the Escherichia coli glnALG upstream activation mechanism in vivo Proceedings of the National Academy of Sciences of the United States of America. 85: 8934-8938. PMID 2904147 DOI: 10.1073/pnas.85.23.8934 |
0.436 |
|
| 1987 |
Borowiec JA, Zhang L, Sasse-Dwight S, Gralla JD. DNA supercoiling promotes formation of a bent repression loop in lac DNA Journal of Molecular Biology. 196: 101-111. PMID 3656441 DOI: 10.1016/0022-2836(87)90513-4 |
0.319 |
|
| 1987 |
Borowiec JA, Gralla JD. All three elements of the lac pS promoter mediate its transcriptional response to DNA supercoiling Journal of Molecular Biology. 195: 89-97. PMID 3309333 DOI: 10.1016/0022-2836(87)90329-9 |
0.457 |
|
| 1987 |
Poljak LG, Gralla JD. The SV40 termination region exhibits an altered helical DNA conformation Nucleic Acids Research. 15: 5433-5442. PMID 3037492 DOI: 10.1093/nar/15.13.5433 |
0.338 |
|
| 1987 |
Buchanan RL, Gralla JD. Factor interactions at simian virus 40 GC-box promoter elements in intact nuclei. Molecular and Cellular Biology. 7: 1554-8. PMID 3037329 DOI: 10.1128/MCB.7.4.1554 |
0.323 |
|
| 1987 |
Poljak LG, Gralla JD. Competition for formation of nucleosomes on fragmented SV40 DNA: A hyperstable nucleosome forms on the termination region Biochemistry. 26: 295-303. PMID 3030401 DOI: 10.1021/bi00375a041 |
0.362 |
|
| 1986 |
Meiklejohn AL, Gralla JD. Entry of RNA polymerase at the lac promoter. Cell. 43: 769-76. PMID 3907860 DOI: 10.1016/0092-8674(85)90250-8 |
0.469 |
|
| 1986 |
Borowiec JA, Gralla JD. High-resolution analysis of lac transcription complexes inside cells. Biochemistry. 25: 5051-7. PMID 3533143 DOI: 10.1021/Bi00366A012 |
0.414 |
|
| 1985 |
Borowiec JA, Gralla JD. Supercoiling response of the lac ps promoter in vitro. Journal of Molecular Biology. 184: 587-98. PMID 3900418 DOI: 10.1016/0022-2836(85)90305-5 |
0.399 |
|
| 1985 |
Gralla JD. Rapid "footprinting" on supercoiled DNA. Proceedings of the National Academy of Sciences of the United States of America. 82: 3078-81. PMID 3889902 DOI: 10.1073/pnas.82.10.3078 |
0.406 |
|
| 1985 |
Carpousis AJ, Gralla JD. Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation. Journal of Molecular Biology. 183: 165-77. PMID 2409292 DOI: 10.1016/0022-2836(85)90210-4 |
0.465 |
|
| 1984 |
Watson JB, Chandler DW, Gralla JD. Specific termination of in vitro transcription by calf thymus RNA polymerase III. Nucleic Acids Research. 12: 5369-84. PMID 6087284 DOI: 10.1093/nar/12.13.5369 |
0.464 |
|
| 1982 |
Carpousis AJ, Stefano JE, Gralla JD. 5' nucleotide heterogeneity and altered initiation of transcription at mutant lac promoters. Journal of Molecular Biology. 157: 619-33. PMID 7120404 DOI: 10.1016/0022-2836(82)90502-2 |
0.399 |
|
| 1982 |
Stefano JE, Gralla JD. Spacer mutations in the lac ps promoter. Proceedings of the National Academy of Sciences of the United States of America. 79: 1069-72. PMID 6951162 DOI: 10.1073/pnas.79.4.1069 |
0.382 |
|
| 1982 |
Chandler DW, Gralla J. The interaction of RNA polymerase II with non-promoter DNA sites. Nucleic Acids Research. 9: 6031-46. PMID 6273819 DOI: 10.1093/Nar/9.22.6031 |
0.531 |
|
| 1981 |
Gralla JD, Carpousis AJ, Stefano JE. Productive and abortive initiation of transcription in vitro at the lac UV5 promoter. Biochemistry. 19: 5864-9. PMID 6450614 DOI: 10.1021/bi00566a031 |
0.395 |
|
| 1981 |
Stefano JE, Ackerson JW, Gralla JD. Alterations in two conserved regions of promoter sequence lead to altered rates of polymerase binding and levels of gene expression. Nucleic Acids Research. 8: 2709-23. PMID 6253889 DOI: 10.1093/nar/8.12.2709 |
0.448 |
|
| 1980 |
Carpousis AJ, Gralla JD. Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter. Biochemistry. 19: 3245-53. PMID 6996702 DOI: 10.1021/bi00555a023 |
0.368 |
|
| 1980 |
Chao MV, Gralla JD, Martinson HG. lac Operator nucleosomes. 1. Repressor binds specifically to operator within the nucleosome core. Biochemistry. 19: 3254-60. PMID 6250557 DOI: 10.1021/Bi00555A024 |
0.322 |
|
| 1980 |
Chandler DW, Gralla J. Specific binding and protection of form II SV40 deoxyribonucleic acid by ribonucleic acid polymerase II from wheat germ. Biochemistry. 19: 1604-12. PMID 6246927 DOI: 10.1021/Bi00549A012 |
0.323 |
|
| 1979 |
Chao MV, Gralla J, Martinson HG. DNA sequence directs placement of histone cores on restriction fragments during nucleosome formation. Biochemistry. 18: 1068-74. PMID 371669 DOI: 10.1021/Bi00573A021 |
0.403 |
|
| 1979 |
Stefano JE, Gralla J. Lac UV5 transcription in vitro. Rate limitation subsequent to formation of an RNA polymerase-DNA complex. Biochemistry. 18: 1063-7. PMID 371668 DOI: 10.1021/Bi00573A020 |
0.514 |
|
| 1974 |
Ravetch J, Gralla J, Crothers DM. Thermodynamic and kinetic properties of short RNA helices: the oligomer sequence AnGCUn. Nucleic Acids Research. 1: 109-27. PMID 10793665 DOI: 10.1093/nar/1.1.109 |
0.498 |
|
| 1974 |
Gralla J, Steitz JA, Crothers DM. Direct physical evidence for secondary structure in an isolated fragment of R17 bacteriophage mRNA. Nature. 248: 204-8. PMID 4819414 DOI: 10.1038/248204A0 |
0.47 |
|
| 1974 |
Gralla J, DeLisi C. mRNA is expected to form stable secondary structures. Nature. 248: 330-2. PMID 4594696 DOI: 10.1038/248330a0 |
0.435 |
|
| 1973 |
Gralla J, Crothers DM. Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches. Journal of Molecular Biology. 78: 301-19. PMID 4747633 DOI: 10.1016/0022-2836(73)90118-6 |
0.531 |
|
| 1973 |
Gralla J, Crothers DM. Free energy of imperfect nucleic acid helices. II. Small hairpin loops. Journal of Molecular Biology. 73: 497-511. PMID 4715014 DOI: 10.1016/0022-2836(73)90096-X |
0.527 |
|
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