| Year |
Citation |
Score |
| 2024 |
Imai S, Allen B, Hochanadel LH, Alexander WG, Cottingham RW, Schadt CW, Pelletier DA, Podar M. Complete genome sequence of sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the rhizosphere. Microbiology Resource Announcements. e0080124. PMID 39347696 DOI: 10.1128/mra.00801-24 |
0.552 |
|
| 2024 |
Schadt C, Martin S, Carrell A, Fortner A, Hopp D, Jacobson D, Klingeman D, Kristy B, Phillips J, Piatkowski B, Miller MA, Smith M, Patil S, Flynn M, Canon S, et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific Data. 11: 339. PMID 38580669 DOI: 10.1038/s41597-024-03069-7 |
0.42 |
|
| 2024 |
Argiroff WA, Carrell AA, Klingeman DM, Dove NC, Muchero W, Veach AM, Wahl T, Lebreux SJ, Webb AB, Peyton K, Schadt CW, Cregger MA. Seasonality and longer-term development generate temporal dynamics in the microbiome. Msystems. e0088623. PMID 38421171 DOI: 10.1128/msystems.00886-23 |
0.374 |
|
| 2023 |
Roth SW, Griffiths NA, Kolka RK, Oleheiser KC, Carrell AA, Klingeman DM, Seibert A, Chanton JP, Hanson PJ, Schadt CW. Elevated temperature alters microbial communities, but not decomposition rates, during 3 years of peat decomposition. Msystems. e0033723. PMID 37819069 DOI: 10.1128/msystems.00337-23 |
0.427 |
|
| 2022 |
Chen H, Ma K, Lu C, Fu Q, Qiu Y, Zhao J, Huang Y, Yang Y, Schadt CW, Chen H. Functional Redundancy in Soil Microbial Community Based on Metagenomics Across the Globe. Frontiers in Microbiology. 13: 878978. PMID 35586865 DOI: 10.3389/fmicb.2022.878978 |
0.409 |
|
| 2021 |
Liao HL, Bonito G, Hameed K, Wu SH, Chen KH, Labbé J, Schadt CW, Tuskan GA, Martin F, Kuo A, Barry K, Grigoriev IV, Vilgalys R. Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi. Frontiers in Microbiology. 12: 680267. PMID 34803937 DOI: 10.3389/fmicb.2021.680267 |
0.353 |
|
| 2021 |
Carper DL, Weston DJ, Barde A, Timm CM, Lu TY, Burdick LH, Jawdy SS, Klingeman DM, Robeson MS, Veach AM, Cregger MA, Kalluri UC, Schadt CW, Podar M, Doktycz MJ, et al. Cultivating the Bacterial Microbiota of Roots. Msystems. e0130620. PMID 34156297 DOI: 10.1128/mSystems.01306-20 |
0.795 |
|
| 2021 |
Ware IM, Van Nuland ME, Yang ZK, Schadt CW, Schweitzer JA, Bailey JK. Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology. Communications Biology. 4: 748. PMID 34135464 DOI: 10.1038/s42003-021-02244-5 |
0.396 |
|
| 2021 |
Dove NC, Veach AM, Muchero W, Wahl T, Stegen JC, Schadt CW, Cregger MA. Assembly of the Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors. Msphere. e0131620. PMID 34106767 DOI: 10.1128/mSphere.01316-20 |
0.334 |
|
| 2021 |
Dove NC, Klingeman DM, Carrell AA, Cregger MA, Schadt CW. Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance. The New Phytologist. PMID 33525047 DOI: 10.1111/nph.17248 |
0.387 |
|
| 2021 |
Veach AM, Morris R, Yip DZ, Yang ZK, Engle NL, Cregger MA, Tschaplinski TJ, Schadt CW. Correction to: Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin. Microbiome. 9: 21. PMID 33482901 DOI: 10.1186/s40168-021-01003-2 |
0.355 |
|
| 2021 |
Vélez JM, Morris RM, Vilgalys R, Labbé J, Schadt CW. Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives. Plos One. 16: e0231367. PMID 33406078 DOI: 10.1371/journal.pone.0231367 |
0.768 |
|
| 2020 |
He Z, Deng Y, Xu M, Li J, Liang J, Xiong J, Yu H, Wu B, Wu L, Xue K, Shi S, Carrillo Y, Van Nostrand JD, Hobbie SE, Reich PB, ... Schadt CW, et al. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International. 144: 106068. PMID 32871382 DOI: 10.1016/J.Envint.2020.106068 |
0.458 |
|
| 2020 |
Veach AM, Chen H, Yang ZK, Labbe AD, Engle NL, Tschaplinski TJ, Schadt CW, Cregger MA. Plant Hosts Modify Belowground Microbial Community Response to Extreme Drought. Msystems. 5. PMID 32606021 DOI: 10.1128/mSystems.00092-20 |
0.455 |
|
| 2020 |
Seward J, Carson MA, Lamit LJ, Basiliko N, Yavitt JB, Lilleskov E, Schadt CW, Smith DS, Mclaughlin J, Mykytczuk N, Willims-Johnson S, Roulet N, Moore T, Harris L, Bräuer S. Peatland Microbial Community Composition Is Driven by a Natural Climate Gradient. Microbial Ecology. PMID 32388577 DOI: 10.1007/S00248-020-01510-Z |
0.546 |
|
| 2020 |
Pelletier DA, Burdick LH, Podar M, Schadt CW, Kalluri UC. Draft Genome Sequence of sp. Strain BK230, Isolated from Roots. Microbiology Resource Announcements. 9. PMID 32193238 DOI: 10.1128/MRA.00159-20 |
0.574 |
|
| 2020 |
Kluber LA, Johnston ER, Allen SA, Hendershot JN, Hanson PJ, Schadt CW. Constraints on microbial communities, decomposition and methane production in deep peat deposits. Plos One. 15: e0223744. PMID 32027653 DOI: 10.1371/Journal.Pone.0223744 |
0.437 |
|
| 2020 |
Hui D, Porter W, Phillips JR, Aidar MP, Lebreux SJ, Schadt CW, Mayes MA. Phosphorus rather than nitrogen enhances CO2
emissions in tropical forest soils: Evidence from a laboratory incubation study European Journal of Soil Science. 71: 495-510. DOI: 10.1111/Ejss.12885 |
0.383 |
|
| 2020 |
Chen H, Dai Z, Veach AM, Zheng J, Xu J, Schadt CW. Global meta-analyses show that conservation tillage practices promote soil fungal and bacterial biomass Agriculture, Ecosystems & Environment. 293: 106841. DOI: 10.1016/J.Agee.2020.106841 |
0.464 |
|
| 2020 |
Nash J, Laushman R, Schadt C. Ectomycorrhizal fungal diversity interacts with soil nutrients to predict plant growth despite weak plant-soil feedbacks Plant and Soil. 453: 445-458. DOI: 10.1007/S11104-020-04616-Y |
0.52 |
|
| 2019 |
Chen H, Yang ZK, Yip D, Morris RH, Lebreux SJ, Cregger MA, Klingeman DM, Hui D, Hettich RL, Wilhelm SW, Wang G, Löffler FE, Schadt CW. One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation. Plos One. 14: e0211310. PMID 31211785 DOI: 10.1371/Journal.Pone.0211310 |
0.515 |
|
| 2019 |
Veach AM, Morris R, Yip DZ, Yang ZK, Engle NL, Cregger MA, Tschaplinski TJ, Schadt CW. Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin. Microbiome. 7: 76. PMID 31103040 DOI: 10.1186/S40168-019-0668-8 |
0.435 |
|
| 2019 |
Bonito G, Benucci GMN, Hameed K, Weighill D, Jones P, Chen KH, Jacobson D, Schadt C, Vilgalys R. Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype. Frontiers in Microbiology. 10: 481. PMID 30984119 DOI: 10.3389/Fmicb.2019.00481 |
0.537 |
|
| 2019 |
Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbe JL, Tuskan G, Martin FM, Grigoriev IV, Vilgalys R. Fungal endophytes of Populus trichocarpa alter host phenotype, gene expression and rhizobiome composition. Molecular Plant-Microbe Interactions : Mpmi. PMID 30699306 DOI: 10.1094/Mpmi-05-18-0133-R |
0.47 |
|
| 2019 |
Ware IM, Van Nuland ME, Schweitzer JA, Yang Z, Schadt CW, Sidak-Loftis LC, Stone NE, Busch JD, Wagner DM, Bailey JK. Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools. Global Change Biology. PMID 30659721 DOI: 10.1111/Gcb.14553 |
0.494 |
|
| 2019 |
Chen H, Dai Z, Jager HI, Wullschleger SD, Xu J, Schadt CW. Influences of nitrogen fertilization and climate regime on the above-ground biomass yields of miscanthus and switchgrass: A meta-analysis Renewable and Sustainable Energy Reviews. 108: 303-311. DOI: 10.1016/J.Rser.2019.03.037 |
0.304 |
|
| 2018 |
Higgins SA, Schadt CW, Matheny PB, Löffler FE. Phylogenomics reveals the dynamic evolution of fungal nitric oxide reductases and their relationship to secondary metabolism. Genome Biology and Evolution. PMID 30165640 DOI: 10.1093/Gbe/Evy187 |
0.372 |
|
| 2018 |
Yip DZ, Veach AM, Yang ZK, Cregger MA, Schadt CW. Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides). The New Phytologist. PMID 29978909 DOI: 10.1111/Nph.15346 |
0.487 |
|
| 2018 |
Dai Z, Su W, Chen H, Barberán A, Zhao H, Yu M, Yu L, Brookes PC, Schadt CW, Chang SX, Xu J. Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe. Global Change Biology. PMID 29645398 DOI: 10.1111/Gcb.14163 |
0.476 |
|
| 2018 |
Karpinets TV, Gopalakrishnan V, Wargo J, Futreal AP, Schadt CW, Zhang J. Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks. Frontiers in Microbiology. 9: 297. PMID 29563898 DOI: 10.3389/Fmicb.2018.00297 |
0.352 |
|
| 2018 |
Cregger MA, Veach AM, Yang ZK, Crouch MJ, Vilgalys R, Tuskan GA, Schadt CW. The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome. Microbiome. 6: 31. PMID 29433554 DOI: 10.1186/S40168-018-0413-8 |
0.46 |
|
| 2018 |
Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, et al. Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome. Msystems. 3. PMID 29404422 DOI: 10.1128/mSystems.00070-17 |
0.776 |
|
| 2018 |
Steinweg JM, Kostka JE, Hanson PJ, Schadt CW. Temperature sensitivity of extracellular enzymes differs with peat depth but not with season in an ombrotrophic bog Soil Biology and Biochemistry. 125: 244-250. DOI: 10.1016/J.Soilbio.2018.07.001 |
0.333 |
|
| 2018 |
Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Erratum to “Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees” [Fungal Ecol. 27 (Part A) (June 2017) 78–86] Fungal Ecology. 33: 143. DOI: 10.1016/J.Funeco.2017.12.004 |
0.385 |
|
| 2018 |
Veach AM, Yip D, Engle NL, Yang ZK, Bible A, Morrell-Falvey J, Tschaplinski TJ, Kalluri UC, Schadt CW. Modification of plant cell wall chemistry impacts metabolome and microbiome composition in Populus PdKOR1 RNAi plants Plant and Soil. 429: 349-361. DOI: 10.1007/S11104-018-3692-8 |
0.336 |
|
| 2017 |
Yu H, He Z, Wang A, Xie J, Wu L, Van Nostrand JD, Jin D, Shao Z, Schadt CW, Zhou J, Deng Y. Divergent responses of forest soil microbial communities under elevated CO2 in different depths of upper soil layers. Applied and Environmental Microbiology. PMID 29079614 DOI: 10.1128/Aem.01694-17 |
0.512 |
|
| 2017 |
Warren MJ, Lin X, Gaby JC, Kretz CB, Kolton M, Morton PL, Pett-Ridge J, Weston DJ, Schadt CW, Kostka JE, Glass JB. Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota. Applied and Environmental Microbiology. PMID 28667112 DOI: 10.1128/Aem.01174-17 |
0.339 |
|
| 2017 |
Bonito G, Hameed K, Toome-Heller M, Healy R, Reid C, Liao HL, Aime MC, Schadt C, Vilgalys R. Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome. Mycologia. 109: 18-26. PMID 28402786 DOI: 10.1080/00275514.2016.1271689 |
0.43 |
|
| 2017 |
Zhang P, He Z, Van Nostrand JD, Qin Y, Deng Y, Wu L, Tu Q, Wang J, Schadt CW, W Fields M, Hazen TC, Arkin AP, Stahl DA, Zhou J. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. Environmental Science & Technology. PMID 28300407 DOI: 10.1021/Acs.Est.6B02980 |
0.417 |
|
| 2017 |
Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, ... ... Schadt C, et al. Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology. PMID 28076891 DOI: 10.1111/1462-2920.13669 |
0.41 |
|
| 2017 |
Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees Fungal Ecology. 27: 78-86. DOI: 10.1016/J.Funeco.2017.03.001 |
0.416 |
|
| 2016 |
Wilson RM, Hopple AM, Tfaily MM, Sebestyen SD, Schadt CW, Pfeifer-Meister L, Medvedeff C, McFarlane KJ, Kostka JE, Kolton M, Kolka RK, Kluber LA, Keller JK, Guilderson TP, Griffiths NA, et al. Stability of peatland carbon to rising temperatures. Nature Communications. 7: 13723. PMID 27958276 DOI: 10.1038/Ncomms13723 |
0.324 |
|
| 2016 |
Utturkar SM, Cude WN, Robeson MS, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TS, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Enrichment of root endophytic bacteria from Populus deltoides and single-cell genomics analysis. Applied and Environmental Microbiology. PMID 27422831 DOI: 10.1128/Aem.01285-16 |
0.764 |
|
| 2016 |
Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL. A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Frontiers in Microbiology. 7: 491. PMID 27148182 DOI: 10.3389/Fmicb.2016.00491 |
0.382 |
|
| 2016 |
Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Löffler FE. Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils. Applied and Environmental Microbiology. PMID 26969694 DOI: 10.1128/Aem.00243-16 |
0.449 |
|
| 2016 |
Bonito G, Hameed K, Ventura R, Krishnan J, Schadt CW, Vilgalys R. Isolating a functionally relevant guild of fungi from the root microbiome of Populus Fungal Ecology. 22: 35-42. DOI: 10.1016/J.Funeco.2016.04.007 |
0.465 |
|
| 2015 |
Klingeman DM, Utturkar S, Lu TY, Schadt CW, Pelletier DA, Brown SD. Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere. Genome Announcements. 3. PMID 26564053 DOI: 10.1128/Genomea.01344-15 |
0.458 |
|
| 2015 |
Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/Fmicb.2015.01118 |
0.71 |
|
| 2015 |
Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm C, Lu TS, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Comparative genome analysis of Pseudomonas genomes including Populus-associated isolates. Applied and Environmental Microbiology. PMID 26519390 DOI: 10.1128/Aem.02612-15 |
0.404 |
|
| 2015 |
Deng Y, He Z, Xiong J, Yu H, Xu M, Hobbie SE, Reich PB, Schadt CW, Kent A, Pendall E, Wallenstein M, Zhou J. Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities. Global Change Biology. PMID 26414247 DOI: 10.1111/Gcb.13098 |
0.51 |
|
| 2015 |
Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA. PanFP: pangenome-based functional profiles for microbial communities. Bmc Research Notes. 8: 479. PMID 26409790 DOI: 10.1186/S13104-015-1462-8 |
0.718 |
|
| 2015 |
Deng Y, Zhang P, Qin Y, Tu Q, Yang Y, He Z, Schadt CW, Zhou J. Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation. Environmental Microbiology. PMID 26177312 DOI: 10.1111/1462-2920.12981 |
0.352 |
|
| 2015 |
Henry H, Naujokas MF, Attanayake C, Basta NT, Cheng Z, Hettiarachchi GM, Maddaloni M, Schadt C, Scheckel KG. Bioavailability-Based In Situ Remediation To Meet Future Lead (Pb) Standards in Urban Soils and Gardens. Environmental Science & Technology. 49: 8948-58. PMID 26140328 DOI: 10.1021/Acs.Est.5B01693 |
0.395 |
|
| 2015 |
Schadt CW, Rosling A. FUNGAL BIOGEOGRAPHY. Comment on "Global diversity and geography of soil fungi". Science (New York, N.Y.). 348: 1438. PMID 26113712 DOI: 10.1126/Science.Aaa4269 |
0.478 |
|
| 2015 |
Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, et al. Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction. Applied and Environmental Microbiology. 81: 4164-72. PMID 25862231 DOI: 10.1128/Aem.00043-15 |
0.417 |
|
| 2015 |
Hacquard S, Schadt CW. Towards a holistic understanding of the beneficial interactions across the Populus microbiome. The New Phytologist. 205: 1424-30. PMID 25422041 DOI: 10.1111/Nph.13133 |
0.379 |
|
| 2015 |
Wang G, Jagadamma S, Mayes MA, Schadt CW, Steinweg JM, Gu L, Post WM. Microbial dormancy improves development and experimental validation of ecosystem model. The Isme Journal. 9: 226-37. PMID 25012899 DOI: 10.1038/Ismej.2014.120 |
0.46 |
|
| 2014 |
Bonito G, Reynolds H, Robeson MS, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology. 23: 3356-70. PMID 24894495 DOI: 10.1111/Mec.12821 |
0.77 |
|
| 2014 |
Lin X, Tfaily MM, Steinweg JM, Chanton P, Esson K, Yang ZK, Chanton JP, Cooper W, Schadt CW, Kostka JE. Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA. Applied and Environmental Microbiology. 80: 3518-30. PMID 24682300 DOI: 10.1128/Aem.00205-14 |
0.487 |
|
| 2014 |
Lin X, Tfaily MM, Green SJ, Steinweg JM, Chanton P, Imvittaya A, Chanton JP, Cooper W, Schadt C, Kostkaa JE. Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland Applied and Environmental Microbiology. 80: 3531-3540. PMID 24682299 DOI: 10.1128/Aem.00206-14 |
0.38 |
|
| 2014 |
Wang G, Mayes MA, Gu L, Schadt CW. Representation of dormant and active microbial dynamics for ecosystem modeling. Plos One. 9: e89252. PMID 24558490 DOI: 10.1371/Journal.Pone.0089252 |
0.372 |
|
| 2014 |
Jasrotia P, Green SJ, Canion A, Overholt WA, Prakash O, Wafula D, Hubbard D, Watson DB, Schadt CW, Brooks SC, Kostka JE. Watershed-scale fungal community characterization along a pH gradient in a subsurface environment cocontaminated with uranium and nitrate. Applied and Environmental Microbiology. 80: 1810-20. PMID 24389927 DOI: 10.1128/Aem.03423-13 |
0.438 |
|
| 2014 |
Tfaily MM, Cooper WT, Kostka JE, Chanton PR, Schadt CW, Hanson PJ, Iversen CM, Chanton JP. Organic matter transformation in the peat column at Marcell Experimental Forest: Humification and vertical stratification Journal of Geophysical Research: Biogeosciences. 119: 661-675. DOI: 10.1002/2013Jg002492 |
0.348 |
|
| 2013 |
Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW. A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. Plos One. 8: e76382. PMID 24146861 DOI: 10.1371/Journal.Pone.0076382 |
0.814 |
|
| 2013 |
Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, Podar M. Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities. Environmental Microbiology. 15: 1882-99. PMID 23387867 DOI: 10.1111/1462-2920.12086 |
0.787 |
|
| 2013 |
Graaff MAd, Six J, Jastrow JD, Schadt CW, Wullschleger SD. Variation in root architecture among switchgrass cultivars impacts root decomposition rates Soil Biology and Biochemistry. 58: 198-206. DOI: 10.1016/J.Soilbio.2012.11.015 |
0.393 |
|
| 2012 |
Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Journal of Bacteriology. 194: 5991-3. PMID 23045501 DOI: 10.1128/Jb.01243-12 |
0.366 |
|
| 2012 |
Cregger MA, Schadt CW, McDowell NG, Pockman WT, Classen AT. Response of the soil microbial community to changes in precipitation in a semiarid ecosystem. Applied and Environmental Microbiology. 78: 8587-94. PMID 23023755 DOI: 10.1128/Aem.02050-12 |
0.729 |
|
| 2012 |
Sullivan TS, Gottel NR, Basta N, Jardine PM, Schadt CW. Firing range soils yield a diverse array of fungal isolates capable of organic acid production and Pb mineral solubilization. Applied and Environmental Microbiology. 78: 6078-86. PMID 22729539 DOI: 10.1128/Aem.01091-12 |
0.501 |
|
| 2012 |
Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. Journal of Bacteriology. 194: 2383-4. PMID 22493196 DOI: 10.1128/Jb.00198-12 |
0.346 |
|
| 2012 |
Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Molecular Plant-Microbe Interactions : Mpmi. 25: 765-78. PMID 22375709 DOI: 10.1094/Mpmi-09-11-0253 |
0.346 |
|
| 2012 |
Mosher JJ, Phelps TJ, Podar M, Hurt RA, Campbell JH, Drake MM, Moberly JG, Schadt CW, Brown SD, Hazen TC, Arkin AP, Palumbo AV, Faybishenko BA, Elias DA. Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp. Applied and Environmental Microbiology. 78: 2082-91. PMID 22267668 DOI: 10.1128/Aem.07165-11 |
0.654 |
|
| 2012 |
Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Hengartner NW, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR. Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide. Environmental Microbiology. 14: 1145-58. PMID 22264231 DOI: 10.1111/J.1462-2920.2011.02695.X |
0.54 |
|
| 2012 |
Green SJ, Prakash O, Jasrotia P, Overholt WA, Cardenas E, Hubbard D, Tiedje JM, Watson DB, Schadt CW, Brooks SC, Kostka JE. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Applied and Environmental Microbiology. 78: 1039-47. PMID 22179233 DOI: 10.1128/Aem.06435-11 |
0.466 |
|
| 2012 |
Gihring TM, Green SJ, Schadt CW. Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environmental Microbiology. 14: 285-90. PMID 21923700 DOI: 10.1111/J.1462-2920.2011.02550.X |
0.393 |
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| 2012 |
Hodkinson BP, Gottel NR, Schadt CW, Lutzoni F. Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. Environmental Microbiology. 14: 147-61. PMID 21906220 DOI: 10.1111/J.1462-2920.2011.02560.X |
0.472 |
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| 2012 |
Castro HF, Classen AT, Austin EE, Crawford KM, Schadt CW. Development and validation of a citrate synthase directed quantitative PCR marker for soil bacterial communities Applied Soil Ecology. 61: 69-75. DOI: 10.1016/J.Apsoil.2012.05.007 |
0.72 |
|
| 2011 |
Weber CF, Zak DR, Hungate BA, Jackson RB, Vilgalys R, Evans RD, Schadt CW, Megonigal JP, Kuske CR. Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems. Environmental Microbiology. 13: 2778-93. PMID 21883796 DOI: 10.1111/J.1462-2920.2011.02548.X |
0.538 |
|
| 2011 |
Gihring TM, Zhang G, Brandt CC, Brooks SC, Campbell JH, Carroll S, Criddle CS, Green SJ, Jardine P, Kostka JE, Lowe K, Mehlhorn TL, Overholt W, Watson DB, Yang Z, ... ... Schadt CW, et al. A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer. Applied and Environmental Microbiology. 77: 5955-65. PMID 21764967 DOI: 10.1128/Aem.00220-11 |
0.441 |
|
| 2011 |
Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/Aem.05255-11 |
0.719 |
|
| 2011 |
Gilmour CC, Elias DA, Kucken AM, Brown SD, Palumbo AV, Schadt CW, Wall JD. Sulfate-reducing bacterium Desulfovibrio desulfuricans ND132 as a model for understanding bacterial mercury methylation. Applied and Environmental Microbiology. 77: 3938-51. PMID 21515733 DOI: 10.1128/Aem.02993-10 |
0.307 |
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| 2011 |
De Graaff MA, Schadt CW, Rula K, Six J, Schweitzer JA, Classen AT. Elevated CO2 and plant species diversity interact to slow root decomposition Soil Biology and Biochemistry. 43: 2347-2354. DOI: 10.1016/J.Soilbio.2011.07.006 |
0.645 |
|
| 2011 |
Garten CT, Brice DJ, Castro HF, Graham RL, Mayes MA, Phillips JR, Post WM, Schadt CW, Wullschleger SD, Tyler DD, Jardine PM, Jastrow JD, Matamala R, Miller RM, Moran KK, et al. Response of "Alamo" switchgrass tissue chemistry and biomass to nitrogen fertilization in West Tennessee, USA Agriculture, Ecosystems and Environment. 140: 289-297. DOI: 10.1016/J.Agee.2010.12.016 |
0.415 |
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| 2010 |
de Graaff MA, Classen AT, Castro HF, Schadt CW. Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates. The New Phytologist. 188: 1055-64. PMID 21058948 DOI: 10.1111/J.1469-8137.2010.03427.X |
0.675 |
|
| 2010 |
Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, ... ... Schadt CW, et al. Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. Journal of Bacteriology. 192: 6494-6. PMID 20889752 DOI: 10.1128/Jb.01064-10 |
0.346 |
|
| 2010 |
Reganold JP, Andrews PK, Reeve JR, Carpenter-Boggs L, Schadt CW, Alldredge JR, Ross CF, Davies NM, Zhou J. Fruit and soil quality of organic and conventional strawberry agroecosystems. Plos One. 5. PMID 20824185 DOI: 10.1371/Journal.Pone.0012346 |
0.416 |
|
| 2010 |
Miller LD, Mosher JJ, Venkateswaran A, Yang ZK, Palumbo AV, Phelps TJ, Podar M, Schadt CW, Keller M. Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments. Bmc Microbiology. 10: 149. PMID 20497531 DOI: 10.1186/1471-2180-10-149 |
0.635 |
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| 2010 |
Reeve JR, Schadt CW, Carpenter-Boggs L, Kang S, Zhou J, Reganold JP. Effects of soil type and farm management on soil ecological functional genes and microbial activities. The Isme Journal. 4: 1099-107. PMID 20376100 DOI: 10.1038/Ismej.2010.42 |
0.46 |
|
| 2010 |
Castro HF, Classen AT, Austin EE, Norby RJ, Schadt CW. Soil microbial community responses to multiple experimental climate change drivers. Applied and Environmental Microbiology. 76: 999-1007. PMID 20023089 DOI: 10.1128/Aem.02874-09 |
0.801 |
|
| 2010 |
Mosher JJ, Drake MM, Carroll SL, Yang ZK, Schadt CW, Brown SD, Podar M, Hazen TC, Arkin AP, Phelps TJ, Palumbo AV, Faybishenko BA, Elias DA. Microbial Community Dynamics of Lactate Enriched Hanford Groundwaters Lawrence Berkeley National Laboratory. DOI: 10.2172/986244 |
0.618 |
|
| 2010 |
Hollister EB, Schadt CW, Palumbo AV, James Ansley R, Boutton TW. Structural and functional diversity of soil bacterial and fungal communities following woody plant encroachment in the southern Great Plains Soil Biology and Biochemistry. 42: 1816-1824. DOI: 10.1016/J.Soilbio.2010.06.022 |
0.566 |
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| 2010 |
Garten CT, Smith JL, Tyler DD, Amonette JE, Bailey VL, Brice DJ, Castro HF, Graham RL, Gunderson CA, Izaurralde RC, Jardine PM, Jastrow JD, Kerley MK, Matamala R, Mayes MA, ... ... Schadt CW, et al. Intra-annual changes in biomass, carbon, and nitrogen dynamics at 4-year old switchgrass field trials in west Tennessee, USA Agriculture, Ecosystems and Environment. 136: 177-184. DOI: 10.1016/J.Agee.2009.12.019 |
0.407 |
|
| 2009 |
Berthrong ST, Schadt CW, Piñeiro G, Jackson RB. Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands. Applied and Environmental Microbiology. 75: 6240-8. PMID 19700539 DOI: 10.1128/Aem.01126-09 |
0.472 |
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| 2009 |
Waldron PJ, Wu L, Van Nostrand JD, Schadt CW, He Z, Watson DB, Jardine PM, Palumbo AV, Hazen TC, Zhou J. Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels. Environmental Science & Technology. 43: 3529-34. PMID 19544850 DOI: 10.1021/Es803423P |
0.426 |
|
| 2009 |
Austin EE, Castro HF, Sides KE, Schadt CW, Classen AT. Assessment of 10 years of CO2 fumigation on soil microbial communities and function in a sweetgum plantation Soil Biology and Biochemistry. 41: 514-520. DOI: 10.1016/J.Soilbio.2008.12.010 |
0.72 |
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| 2008 |
Nemergut DR, Townsend AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN, Schmidt SK. The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environmental Microbiology. 10: 3093-105. PMID 18764871 DOI: 10.1111/J.1462-2920.2008.01735.X |
0.795 |
|
| 2008 |
Zhou J, Kang S, Schadt CW, Garten CT. Spatial scaling of functional gene diversity across various microbial taxa. Proceedings of the National Academy of Sciences of the United States of America. 105: 7768-73. PMID 18509054 DOI: 10.1073/Pnas.0709016105 |
0.524 |
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| 2008 |
Porter TM, Schadt CW, Rizvi L, Martin AP, Schmidt SK, Scott-Denton L, Vilgalys R, Moncalvo JM. Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution. 46: 635-44. PMID 18032071 DOI: 10.1016/J.Ympev.2007.10.002 |
0.643 |
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| 2008 |
Schmidt SK, Sobieniak-Wiseman LC, Kageyama SA, Halloy SRP, Schadt CW. Mycorrhizal and dark-septate fungi in plant roots above 4270 meters elevation in the Andes and rocky mountains Arctic, Antarctic, and Alpine Research. 40: 576-583. DOI: 10.1657/1523-0430(07-068)[Schmidt]2.0.Co;2 |
0.59 |
|
| 2008 |
Baker SE, Thykaer J, Adney WS, Brettin TS, Brockman FJ, D'haeseleer P, Martinez AD, Miller RM, Rokhsar DS, Schadt CW, Torok T, Tuskan G, Bennett J, Berka RM, Briggs SP, et al. Fungal genome sequencing and bioenergy Fungal Biology Reviews. 22: 1-5. DOI: 10.1016/J.Fbr.2008.03.001 |
0.348 |
|
| 2007 |
He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Huang Z, Wu W, Gu B, Jardine P, Criddle C, Zhou J. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. The Isme Journal. 1: 67-77. PMID 18043615 DOI: 10.1038/Ismej.2007.2 |
0.424 |
|
| 2007 |
Gao H, Yang ZK, Gentry TJ, Wu L, Schadt CW, Zhou J. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Applied and Environmental Microbiology. 73: 563-71. PMID 17098911 DOI: 10.1128/Aem.01771-06 |
0.374 |
|
| 2007 |
Schadt CW, Classen AT. Soil Microbiology, Ecology, and Biochemistry Soil Science Society of America Journal. 71: 1420-1420. DOI: 10.2136/Sssaj2007.0017Br |
0.662 |
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| 2007 |
Garten CT, Kang S, Brice DJ, Schadt CW, Zhou J. Variability in soil properties at different spatial scales (1 m-1 km) in a deciduous forest ecosystem Soil Biology and Biochemistry. 39: 2621-2627. DOI: 10.1016/J.Soilbio.2007.04.033 |
0.408 |
|
| 2006 |
Rodríguez-Martínez EM, Pérez EX, Schadt CW, Zhou J, Massol-Deyá AA. Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico). International Journal of Environmental Research and Public Health. 3: 292-300. PMID 16968977 DOI: 10.3390/Ijerph2006030036 |
0.461 |
|
| 2006 |
Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J. Microarray applications in microbial ecology research. Microbial Ecology. 52: 159-75. PMID 16897303 DOI: 10.1007/S00248-006-9072-6 |
0.41 |
|
| 2006 |
Wu L, Liu X, Schadt CW, Zhou J. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Applied and Environmental Microbiology. 72: 4931-41. PMID 16820490 DOI: 10.1128/Aem.02738-05 |
0.412 |
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| 2006 |
Hwang C, Wu WM, Gentry TJ, Carley J, Carroll SL, Schadt C, Watson D, Jardine PM, Zhou J, Hickey RF, Criddle CS, Fields MW. Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor. Applied Microbiology and Biotechnology. 71: 748-60. PMID 16292532 DOI: 10.1007/S00253-005-0189-1 |
0.42 |
|
| 2004 |
Meyer AF, Lipson DA, Martin AP, Schadt CW, Schmidt SK. Molecular and metabolic characterization of cold-tolerant alpine soil Pseudomonas sensu stricto. Applied and Environmental Microbiology. 70: 483-9. PMID 14711678 DOI: 10.1128/Aem.70.1.483-489.2004 |
0.795 |
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| 2004 |
Schadt CW, Liebich J, Chong SC, Gentry TJ, He Z, Pan H, Zhou J. Design and Use of Functional Gene Microarrays (FGAs) for the Characterization of Microbial Communities Methods in Microbiology. 34: 331-368. DOI: 10.1016/S0580-9517(04)34011-0 |
0.367 |
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| 2003 |
Schadt CW, Martin AP, Lipson DA, Schmidt SK. Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science (New York, N.Y.). 301: 1359-61. PMID 12958355 DOI: 10.1126/Science.1086940 |
0.695 |
|
| 2002 |
Lipson DA, Schadt CW, Schmidt SK. Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt. Microbial Ecology. 43: 307-14. PMID 12037609 DOI: 10.1007/S00248-001-1057-X |
0.675 |
|
| 2001 |
Schadt CW, Mullen RB, Schmidt SK. Isolation and phylogenetic identification of a dark-septate fungus associated with the alpine plant Ranunculus adoneus New Phytologist. 150: 747-755. DOI: 10.1046/J.1469-8137.2001.00132.X |
0.606 |
|
| 1999 |
Lipson DA, Schadt CW, Schmidt SK, Monson RK. Ectomycorrhizal transfer of amino acid-nitrogen to the alpine sedge Kobresia myosuroides New Phytologist. 142: 163-167. DOI: 10.1046/J.1469-8137.1999.00375.X |
0.603 |
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