M. Eric Schranz, PhD - Publications

Affiliations: 
2007-2012 Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam, Amsterdam, Netherlands 
 2012- Biosystematics Wageningen University and Research Center, The Netherlands 
Area:
plant genomics, phylogenomics, polyploidy
Website:
https://www.wur.nl/en/Persons/Eric-prof.dr.-ME-Eric-Schranz.htm

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Nguyen TP, Mühlich C, Mohammadin S, van den Bergh E, Platts AE, Haas FB, Rensing SA, Schranz ME. Genome Improvement and Genetic Map Construction for , the First Divergent Branch in the Brassicaceae Family. G3 (Bethesda, Md.). PMID 31554715 DOI: 10.1534/g3.119.400657  0.84
2019 Kozik A, Rowan BA, Lavelle D, Berke L, Schranz ME, Michelmore RW, Christensen AC. The alternative reality of plant mitochondrial DNA: One ring does not rule them all. Plos Genetics. 15: e1008373. PMID 31469821 DOI: 10.1371/journal.pgen.1008373  0.44
2019 Chen Q, Jiang T, Liu YX, Liu H, Zhao T, Liu Z, Gan X, Hallab A, Wang X, He J, Ma Y, Zhang F, Jin T, Schranz ME, Wang Y, et al. Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota. Science China. Life Sciences. PMID 31079337 DOI: 10.1007/s11427-019-9521-2  1
2019 Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. Bmc Genomics. 20: 95. PMID 30700268 DOI: 10.1186/s12864-019-5452-4  0.84
2019 Zhao T, Schranz ME. Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674676 DOI: 10.1073/pnas.1801757116  1
2018 Artur MAS, Zhao T, Ligterink W, Schranz ME, Hilhorst HWM. Dissecting the genomic diversification of LATE EMBRYOGENESIS ABUNDANT (LEA) protein gene families in plants. Genome Biology and Evolution. PMID 30407531 DOI: 10.1093/gbe/evy248  1
2018 Gaiero P, Vaio M, Peters SA, Schranz ME, de Jong H, Speranza PR. Comparative analysis of repetitive sequences among species from the potato and the tomato clades. Annals of Botany. PMID 30346473 DOI: 10.1093/aob/mcy186  0.52
2018 Arisz SA, Heo JY, Koevoets IT, Zhao T, van Egmond P, Meyer J, Zeng W, Niu X, Wang B, Mitchell-Olds T, Schranz ME, Testerink C. Diacylglycerol acyltransferase 1 contributes to freezing tolerance. Plant Physiology. PMID 29907701 DOI: 10.1104/pp.18.00503  1
2018 Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. American Journal of Botany. PMID 29574686 DOI: 10.1002/ajb2.1040  0.92
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Schranz ME, et al. Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 1585. PMID 29185503 DOI: 10.1038/s41559-017-0310-8  1
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Schranz ME, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/s41559-017-0119  1
2017 Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae. American Journal of Botany. PMID 28743759 DOI: 10.3732/ajb.1700091  0.72
2017 Zhao T, Holmer R, Bruijn S, Angenent GC, van den Burg HA, Schranz ME. Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation. The Plant Cell. PMID 28584165 DOI: 10.1105/tpc.17.00312  1
2017 Zhao T, Schranz ME. Network approaches for plant phylogenomic synteny analysis. Current Opinion in Plant Biology. 36: 129-134. PMID 28327435 DOI: 10.1016/j.pbi.2017.03.001  1
2017 Akman M, Kleine R, van Tienderen PH, Schranz ME. Identification of the Submergence Tolerance QTL Come Quick Drowning1 (CQD1) in Arabidopsis thaliana. The Journal of Heredity. PMID 28207056 DOI: 10.1093/jhered/esx014  0.48
2016 Gaiero P, van de Belt J, Vilaró F, Schranz ME, Speranza P, de Jong H. Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping. Genome. 1-13. PMID 28169563 DOI: 10.1139/gen-2016-0150  0.52
2016 van den Bergh E, Hofberger JA, Schranz ME. Flower power and the mustard bomb: Comparative analysis of gene and genome duplications in glucosinolate biosynthetic pathway evolution in Cleomaceae and Brassicaceae. American Journal of Botany. PMID 27313198 DOI: 10.3732/ajb.1500445  0.84
2016 Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, ... ... Schranz ME, et al. Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature Plants. 2: 16074. PMID 27255838 DOI: 10.1038/nplants.2016.74  1
2016 Van Veen H, Vashisht D, Akman M, Girke T, Mustroph A, Reinen E, Hartman S, Kooiker M, van Tienderen P, Schranz ME, Bailey-Serres J, Voesenek LA, Sasidharan R. Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress. Plant Physiology. PMID 27208254 DOI: 10.1104/pp.16.00472  0.48
2016 Lysak MA, Mandáková T, Schranz ME. Comparative paleogenomics of crucifers: ancestral genomic blocks revisited. Current Opinion in Plant Biology. 30: 108-15. PMID 26945766 DOI: 10.1016/j.pbi.2016.02.001  0.48
2015 Li W, Zhang F, Chang Y, Zhao T, Schranz ME, Wang G. Nicotinate O-Glucosylation Is an Evolutionarily Metabolic Trait Important for Seed Germination under Stress Conditions in Arabidopsis thaliana. The Plant Cell. PMID 26116607 DOI: 10.1105/tpc.15.00223  1
2015 Hofberger JA, Ramirez AM, Bergh Ev, Zhu X, Bouwmeester HJ, Schuurink RC, Schranz ME. Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants. Plos One. 10: e0128808. PMID 26046541 DOI: 10.1371/journal.pone.0128808  0.84
2015 Mandáková T, Schranz ME, Sharbel TF, de Jong H, Lysak MA. Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes. The Plant Journal : For Cell and Molecular Biology. 82: 785-93. PMID 25864414 DOI: 10.1111/tpj.12849  1
2015 Hofberger JA, Nsibo DL, Govers F, Bouwmeester K, Schranz ME. A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae. Genome Biology and Evolution. 7: 720-34. PMID 25635042 DOI: 10.1093/gbe/evv020  0.84
2014 Hofberger JA, Zhou B, Tang H, Jones JD, Schranz ME. A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants. Bmc Genomics. 15: 966. PMID 25380807 DOI: 10.1186/1471-2164-15-966  0.84
2014 Hartman Y, Hooftman DA, Uwimana B, Schranz ME, van de Wiel CC, Smulders MJ, Visser RG, Michelmore RW, van Tienderen PH. Abiotic stress QTL in lettuce crop-wild hybrids: comparing greenhouse and field experiments. Ecology and Evolution. 4: 2395-409. PMID 25360276 DOI: 10.1002/ece3.1060  0.48
2014 Aflitos S, Schijlen E, de Jong H, de Ridder D, Smit S, Finkers R, Wang J, Zhang G, Li N, Mao L, Bakker F, Dirks R, Breit T, Gravendeel B, et al. Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. The Plant Journal : For Cell and Molecular Biology. 80: 136-48. PMID 25039268 DOI: 10.1111/tpj.12616  1
2014 Heo JY, Feng D, Niu X, Mitchell-Olds T, Van Tienderen PH, Tomes D, Schranz ME. Identification of quantitative trait loci and a candidate locus for freezing tolerance in controlled and outdoor environments in the overwintering crucifer Boechera stricta. Plant, Cell & Environment. 37: 2459-69. PMID 24811132 DOI: 10.1111/pce.12365  1
2014 van Veen H, Akman M, Jamar DCL, Vreugdenhil D, Kooiker M, van Tienderen P, Voesenek LACJ, Schranz ME, Sasidharan R. Group VII Ethylene Response Factor diversification and regulation in four species from flood-prone environments Plant, Cell and Environment. 37: 2421-2432. PMID 24548060 DOI: 10.1111/pce.12302  1
2013 Sasidharan R, Mustroph A, Boonman A, Akman M, Ammerlaan AM, Breit T, Schranz ME, Voesenek LA, van Tienderen PH. Root transcript profiling of two Rorippa species reveals gene clusters associated with extreme submergence tolerance. Plant Physiology. 163: 1277-92. PMID 24077074 DOI: 10.1104/pp.113.222588  0.48
2013 Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, ... ... Schranz ME, et al. The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. The Plant Cell. 25: 2813-30. PMID 23983221 DOI: 10.1105/tpc.113.113480  1
2013 Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, ... ... Schranz ME, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/ng.2684  1
2013 Lovell JT, Aliyu OM, Mau M, Schranz ME, Koch M, Kiefer C, Song BH, Mitchell-Olds T, Sharbel TF. On the origin and evolution of apomixis in Boechera. Plant Reproduction. 26: 309-15. PMID 23783772 DOI: 10.1007/s00497-013-0218-7  1
2012 Prasad KV, Song BH, Olson-Manning C, Anderson JT, Lee CR, Schranz ME, Windsor AJ, Clauss MJ, Manzaneda AJ, Naqvi I, Reichelt M, Gershenzon J, Rupasinghe SG, Schuler MA, Mitchell-Olds T. A gain-of-function polymorphism controlling complex traits and fitness in nature. Science (New York, N.Y.). 337: 1081-4. PMID 22936775 DOI: 10.1126/science.1221636  1
2012 Akman M, Bhikharie AV, McLean EH, Boonman A, Visser EJ, Schranz ME, van Tienderen PH. Wait or escape? Contrasting submergence tolerance strategies of Rorippa amphibia, Rorippa sylvestris and their hybrid. Annals of Botany. 109: 1263-76. PMID 22499857 DOI: 10.1093/aob/mcs059  0.48
2012 Schranz ME, Mohammadin S, Edger PP. Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model. Current Opinion in Plant Biology. 15: 147-53. PMID 22480429 DOI: 10.1016/j.pbi.2012.03.011  0.72
2010 Aliyu OM, Schranz ME, Sharbel TF. Quantitative variation for apomictic reproduction in the genus Boechera (Brassicaceae). American Journal of Botany. 97: 1719-31. PMID 21616805 DOI: 10.3732/ajb.1000188  1
2009 Song BH, Windsor AJ, Schmid KJ, Ramos-Onsins S, Schranz ME, Heidel AJ, Mitchell-Olds T. Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis. Genetics. 181: 1021-33. PMID 19104077 DOI: 10.1534/genetics.108.095364  1
2007 Kantama L, Sharbel TF, Schranz ME, Mitchell-Olds T, de Vries S, de Jong H. Diploid apomicts of the Boechera holboellii complex display large-scale chromosome substitutions and aberrant chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 14026-31. PMID 17704257 DOI: 10.1073/pnas.0706647104  1
2007 Schranz ME, Windsor AJ, Song BH, Lawton-Rauh A, Mitchell-Olds T. Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis. Plant Physiology. 144: 286-98. PMID 17369426 DOI: 10.1104/pp.107.096685  1
2007 Schranz ME, Song BH, Windsor AJ, Mitchell-Olds T. Comparative genomics in the Brassicaceae: a family-wide perspective. Current Opinion in Plant Biology. 10: 168-75. PMID 17300984 DOI: 10.1016/j.pbi.2007.01.014  1
2006 Schranz ME, Lysak MA, Mitchell-Olds T. The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends in Plant Science. 11: 535-42. PMID 17029932 DOI: 10.1016/j.tplants.2006.09.002  1
2006 Schranz ME, Kantama L, de Jong H, Mitchell-Olds T. Asexual reproduction in a close relative of Arabidopsis: a genetic investigation of apomixis in Boechera (Brassicaceae). The New Phytologist. 171: 425-38. PMID 16866948 DOI: 10.1111/j.1469-8137.2006.01765.x  1
2006 Schranz ME, Mitchell-Olds T. Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. The Plant Cell. 18: 1152-65. PMID 16617098 DOI: 10.1105/tpc.106.041111  1
2006 Windsor AJ, Schranz ME, Formanová N, Gebauer-Jung S, Bishop JG, Schnabelrauch D, Kroymann J, Mitchell-Olds T. Partial shotgun sequencing of the Boechera stricta genome reveals extensive microsynteny and promoter conservation with Arabidopsis. Plant Physiology. 140: 1169-82. PMID 16607030 DOI: 10.1104/pp.105.073981  1
2005 Schranz ME, Dobes C, Koch MA, Mitchell-Olds T. Sexual reproduction, hybridization, apomixis, and polyploidization in the genus Boechera (Brassicaceae). American Journal of Botany. 92: 1797-810. PMID 21646097 DOI: 10.3732/ajb.92.11.1797  1
2004 Schranz ME, Osborn TC. De novo variation in life-history traits and responses to growth conditions of resynthesized polyploid Brassica napus (Brassicaceae). American Journal of Botany. 91: 174-83. PMID 21653373 DOI: 10.3732/ajb.91.2.174  1
2002 Schranz ME, Quijada P, Sung SB, Lukens L, Amasino R, Osborn TC. Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics. 162: 1457-68. PMID 12454088  1
2000 Schranz ME, Osborn TC. Novel flowering time variation in the resynthesized polyploid Brassica napus. The Journal of Heredity. 91: 242-6. PMID 10833052  1
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