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Yihong Ye - Publications

Affiliations: 
NIH, NIDDK 
Area:
ERAD, secretory protein quality control
Website:
http://www2.niddk.nih.gov/NIDDKLabs/IntramuralFaculty/YeYihong.htm
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49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang L, Xu Y, Yun S, Yuan Q, Satpute-Krishnan P, Ye Y. SAYSD1 senses UFMylated ribosome to safeguard co-translational protein translocation at the endoplasmic reticulum. Cell Reports. 42: 112028. PMID 36848233 DOI: 10.1016/j.celrep.2023.112028  0.321
2022 Bock J, Kühnle N, Knopf JD, Landscheidt N, Lee JG, Ye Y, Lemberg MK. Rhomboid protease RHBDL4 promotes retrotranslocation of aggregation-prone proteins for degradation. Cell Reports. 40: 111175. PMID 35947953 DOI: 10.1016/j.celrep.2022.111175  0.349
2020 Ye Y. Decision letter: Doa10 is a membrane protein retrotranslocase in ER-associated protein degradation Elife. DOI: 10.7554/Elife.56945.Sa1  0.364
2019 Gulbranson DR, Crisman L, Lee M, Ouyang Y, Menasche BL, Demmitt BA, Wan C, Nomura T, Ye Y, Yu H, Shen J. AAGAB Controls AP2 Adaptor Assembly in Clathrin-Mediated Endocytosis. Developmental Cell. PMID 31353312 DOI: 10.1016/J.Devcel.2019.06.013  0.347
2018 Ye Y, Baek SH, Ye Y, Zhang T. Proteomic characterization of endogenous substrates of mammalian ubiquitin ligase Hrd1. Cell & Bioscience. 8: 46. PMID 30167107 DOI: 10.1186/s13578-018-0245-z  0.326
2018 Xu Y, Cui L, Dibello A, Wang L, Lee J, Saidi L, Lee JG, Ye Y. DNAJC5 facilitates USP19-dependent unconventional secretion of misfolded cytosolic proteins. Cell Discovery. 4: 11. PMID 29531792 DOI: 10.1038/S41421-018-0012-7  0.386
2017 Mock JY, Xu Y, Ye Y, Clemons WM. Structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35. Proceedings of the National Academy of Sciences of the United States of America. PMID 29042515 DOI: 10.1073/Pnas.1702940114  0.659
2017 Gulbranson DR, Davis EM, Demmitt BA, Ouyang Y, Ye Y, Yu H, Shen J. RABIF/MSS4 is a Rab-stabilizing holdase chaperone required for GLUT4 exocytosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28894007 DOI: 10.1073/Pnas.1712176114  0.349
2017 Liu C, Liu W, Ye Y, Li W. Ufd2p synthesizes branched ubiquitin chains to promote the degradation of substrates modified with atypical chains. Nature Communications. 8: 14274. PMID 28165462 DOI: 10.1038/Ncomms14274  0.313
2016 Xu Y, Anderson DE, Ye Y. The HECT domain ubiquitin ligase HUWE1 targets unassembled soluble proteins for degradation. Cell Discovery. 2: 16040. PMID 27867533 DOI: 10.1038/celldisc.2016.40  0.305
2016 Zhao Y, Zhang T, Huo H, Ye Y, Liu Y. Lunapark Is a Component of a Ubiquitin Ligase Complex Localized to the Endoplasmic Reticulum Three-way Junctions. The Journal of Biological Chemistry. PMID 27387505 DOI: 10.1074/jbc.M116.737783  0.304
2015 Zhang T, Xu Y, Liu Y, Ye Y. gp78 functions downstream of Hrd1 to promote degradation of misfolded proteins of the endoplasmic reticulum. Molecular Biology of the Cell. PMID 26424800 DOI: 10.1091/mbc.E15-06-0354  0.342
2015 Ban GY, Ye YM, Lee Y, Kim JE, Nam YH, Lee SK, Kim JH, Jung KS, Kim SH, Park HS. Predictors of Asthma Control by Stepwise Treatment in Elderly Asthmatic Patients. Journal of Korean Medical Science. 30: 1042-7. PMID 26240480 DOI: 10.3346/jkms.2015.30.8.1042  0.481
2015 Mock JY, Chartron JW, Zaslaver M, Xu Y, Ye Y, Clemons WM. Bag6 complex contains a minimal tail-anchor-targeting module and a mock BAG domain. Proceedings of the National Academy of Sciences of the United States of America. 112: 106-11. PMID 25535373 DOI: 10.1073/Pnas.1402745112  0.65
2014 Zhang T, Ye Y. The final moments of misfolded proteins en route to the proteasome. Dna and Cell Biology. 33: 477-83. PMID 24833120 DOI: 10.1089/dna.2014.2452  0.317
2014 Christianson JC, Ye Y. Cleaning up in the endoplasmic reticulum: ubiquitin in charge. Nature Structural & Molecular Biology. 21: 325-35. PMID 24699081 DOI: 10.1038/Nsmb.2793  0.329
2014 Liu Y, Soetandyo N, Lee JG, Liu L, Xu Y, Clemons WM, Ye Y. USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation. Elife. 3: e01369. PMID 24424410 DOI: 10.7554/eLife.01369  0.644
2014 Huang CH, Chu YR, Ye Y, Chen X. Role of HERP and a HERP-related protein in HRD1-dependent protein degradation at the endoplasmic reticulum. The Journal of Biological Chemistry. 289: 4444-54. PMID 24366871 DOI: 10.1074/jbc.M113.519561  0.35
2014 Lee JG, Kim W, Gygi S, Ye Y. Characterization of the deubiquitinating activity of USP19 and its role in endoplasmic reticulum-associated degradation. The Journal of Biological Chemistry. 289: 3510-7. PMID 24356957 DOI: 10.1074/Jbc.M113.538934  0.309
2014 Liu Y, Soetandyo N, Lee JG, Liu L, Xu Y, Clemons WM, Ye Y. USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation Elife. 2014. DOI: 10.7554/eLife.01369.001  0.597
2013 Huang CH, Hsiao HT, Chu YR, Ye Y, Chen X. Derlin2 protein facilitates HRD1-mediated retro-translocation of sonic hedgehog at the endoplasmic reticulum. The Journal of Biological Chemistry. 288: 25330-9. PMID 23867461 DOI: 10.1074/jbc.M113.455212  0.305
2013 Liu Y, Soetandyo N, Lee J, Liu L, Xu Y, Clemons WM, Ye Y. Author response: USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation Elife. DOI: 10.7554/Elife.01369.017  0.31
2012 Xu Y, Cai M, Yang Y, Huang L, Ye Y. SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation. Cell Reports. 2: 1633-44. PMID 23246001 DOI: 10.1016/j.celrep.2012.11.010  0.322
2012 Liu Y, Ye Y. Roles of p97-associated deubiquitinases in protein quality control at the endoplasmic reticulum. Current Protein & Peptide Science. 13: 436-46. PMID 22812527 DOI: 10.2174/138920312802430608  0.326
2011 Zhong Y, Wang Y, Yang H, Ballar P, Lee JG, Ye Y, Monteiro MJ, Fang S. Importin beta interacts with the endoplasmic reticulum-associated degradation machinery and promotes ubiquitination and degradation of mutant alpha1-antitrypsin. The Journal of Biological Chemistry. 286: 33921-30. PMID 21832065 DOI: 10.1074/Jbc.M111.272906  0.334
2011 Nery FC, Armata IA, Farley JE, Cho JA, Yaqub U, Chen P, da Hora CC, Wang Q, Tagaya M, Klein C, Tannous B, Caldwell KA, Caldwell GA, Lencer WI, Ye Y, et al. TorsinA participates in endoplasmic reticulum-associated degradation. Nature Communications. 2: 393. PMID 21750546 DOI: 10.1038/Ncomms1383  0.394
2011 Wang Q, Liu Y, Soetandyo N, Baek K, Hegde R, Ye Y. A ubiquitin ligase-associated chaperone holdase maintains polypeptides in soluble states for proteasome degradation. Molecular Cell. 42: 758-70. PMID 21636303 DOI: 10.1016/J.Molcel.2011.05.010  0.319
2010 Soetandyo N, Ye Y. The p97 ATPase dislocates MHC class I heavy chain in US2-expressing cells via a Ufd1-Npl4-independent mechanism. The Journal of Biological Chemistry. 285: 32352-9. PMID 20702414 DOI: 10.1074/Jbc.M110.131649  0.356
2010 Soetandyo N, Wang Q, Ye Y, Li L. Role of intramembrane charged residues in the quality control of unassembled T-cell receptor alpha-chains at the endoplasmic reticulum. Journal of Cell Science. 123: 1031-8. PMID 20332119 DOI: 10.1242/Jcs.059758  0.374
2010 Bernardi KM, Williams JM, Kikkert M, van Voorden S, Wiertz EJ, Ye Y, Tsai B. The E3 ubiquitin ligases Hrd1 and gp78 bind to and promote cholera toxin retro-translocation. Molecular Biology of the Cell. 21: 140-51. PMID 19864457 DOI: 10.1091/Mbc.E09-07-0586  0.59
2009 Lim PJ, Danner R, Liang J, Doong H, Harman C, Srinivasan D, Rothenberg C, Wang H, Ye Y, Fang S, Monteiro MJ. Ubiquilin and p97/VCP bind erasin, forming a complex involved in ERAD. The Journal of Cell Biology. 187: 201-17. PMID 19822669 DOI: 10.1083/Jcb.200903024  0.323
2009 Wang Q, Mora-Jensen H, Weniger MA, Perez-Galan P, Wolford C, Hai T, Ron D, Chen W, Trenkle W, Wiestner A, Ye Y. ERAD inhibitors integrate ER stress with an epigenetic mechanism to activate BH3-only protein NOXA in cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 2200-5. PMID 19164757 DOI: 10.1073/Pnas.0807611106  0.366
2007 Lu Y, Lv Y, Ye Y, Wang Y, Hong Y, Fortini ME, Zhong Y, Xie Z. A role for presenilin in post-stress regulation: effects of presenilin mutations on Ca2+ currents in Drosophila. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 21: 2368-78. PMID 17428965 DOI: 10.1096/Fj.06-6380Com  0.571
2006 Wang Q, Li L, Ye Y. Regulation of retrotranslocation by p97-associated deubiquitinating enzyme ataxin-3. The Journal of Cell Biology. 174: 963-71. PMID 17000876 DOI: 10.1083/jcb.200605100  0.347
2006 Seidner GA, Ye Y, Faraday MM, Alvord WG, Fortini ME. Modeling clinically heterogeneous presenilin mutations with transgenic Drosophila. Current Biology : Cb. 16: 1026-33. PMID 16713961 DOI: 10.1016/J.Cub.2006.04.004  0.692
2006 Wang X, Ye Y, Lencer W, Hansen TH. The viral E3 ubiquitin ligase mK3 uses the Derlin/p97 endoplasmic reticulum-associated degradation pathway to mediate down-regulation of major histocompatibility complex class I proteins. The Journal of Biological Chemistry. 281: 8636-44. PMID 16446359 DOI: 10.1074/Jbc.M513920200  0.451
2005 Ye Y, Shibata Y, Kikkert M, van Voorden S, Wiertz E, Rapoport TA. Recruitment of the p97 ATPase and ubiquitin ligases to the site of retrotranslocation at the endoplasmic reticulum membrane. Proceedings of the National Academy of Sciences of the United States of America. 102: 14132-8. PMID 16186510 DOI: 10.1073/Pnas.0505006102  0.664
2005 Kothe M, Ye Y, Wagner JS, De Luca HE, Kern E, Rapoport TA, Lencer WI. Role of p97 AAA-ATPase in the retrotranslocation of the cholera toxin A1 chain, a non-ubiquitinated substrate. The Journal of Biological Chemistry. 280: 28127-32. PMID 15932873 DOI: 10.1074/Jbc.M503138200  0.536
2004 Ye Y, Shibata Y, Yun C, Ron D, Rapoport TA. A membrane protein complex mediates retro-translocation from the ER lumen into the cytosol. Nature. 429: 841-7. PMID 15215856 DOI: 10.1038/Nature02656  0.682
2003 Ye Y, Meyer HH, Rapoport TA. Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains. The Journal of Cell Biology. 162: 71-84. PMID 12847084 DOI: 10.1083/Jcb.200302169  0.579
2003 Flierman D, Ye Y, Dai M, Chau V, Rapoport TA. Polyubiquitin serves as a recognition signal, rather than a ratcheting molecule, during retrotranslocation of proteins across the endoplasmic reticulum membrane. The Journal of Biological Chemistry. 278: 34774-82. PMID 12813030 DOI: 10.1074/Jbc.M303360200  0.589
2002 Tsai B, Ye Y, Rapoport TA. Retro-translocation of proteins from the endoplasmic reticulum into the cytosol. Nature Reviews. Molecular Cell Biology. 3: 246-55. PMID 11994744 DOI: 10.1038/Nrm780  0.663
2002 Hu Y, Ye Y, Fortini ME. Nicastrin is required for gamma-secretase cleavage of the Drosophila Notch receptor. Developmental Cell. 2: 69-78. PMID 11782315 DOI: 10.1016/S1534-5807(01)00105-8  0.644
2001 Ye Y, Meyer HH, Rapoport TA. The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol. Nature. 414: 652-6. PMID 11740563 DOI: 10.1038/414652A  0.611
2000 Ye Y, Fortini ME. Proteolysis and developmental signal transduction. Seminars in Cell & Developmental Biology. 11: 211-21. PMID 10906278 DOI: 10.1006/scdb.2000.0167  0.575
2000 Fortini ME, Ye Y, Periz G, Lukinova NI. The role of presenilin and the serca-type Ca2+-ATPase in notch receptor trafficking and proteolysis Neurobiology of Aging. 21: 25. DOI: 10.1016/S0197-4580(00)82790-6  0.542
1999 Ye Y, Fortini ME. Apoptotic activities of wild-type and Alzheimer's disease-related mutant presenilins in Drosophila melanogaster. The Journal of Cell Biology. 146: 1351-64. PMID 10491396 DOI: 10.1083/jcb.146.6.1351  0.589
1999 Ye Y, Lukinova N, Fortini ME. Neurogenic phenotypes and altered Notch processing in Drosophila Presenilin mutants. Nature. 398: 525-9. PMID 10206647 DOI: 10.1038/19096  0.623
1998 Ye Y, Fortini ME. Characterization of Drosophila Presenilin and its colocalization with Notch during development. Mechanisms of Development. 79: 199-211. PMID 10349633 DOI: 10.1016/S0925-4773(98)00169-5  0.607
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