José Alonso - Publications

Affiliations: 
North Carolina State University, Raleigh, NC 
Area:
Hormone signal integration, recombineering, translation regulation, ribosome footprinting
Website:
https://www.cals.ncsu.edu/pmb/Faculty/jalonso/jalonso.html

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Perkins P, Mazzoni-Putman S, Stepanova A, Alonso J, Heber S. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data. Bmc Genomics. 20: 422. PMID 31167636 DOI: 10.1186/s12864-019-5700-7  0.36
2019 Stepanova AN, Alonso JM. From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration. The Plant Cell. PMID 31068456 DOI: 10.1105/tpc.19.00339  1
2018 Brumos J, Robles LM, Yun J, Vu TC, Jackson S, Alonso JM, Stepanova AN. Local Auxin Biosynthesis Is a Key Regulator of Plant Development. Developmental Cell. 47: 306-318.e5. PMID 30415657 DOI: 10.1016/j.devcel.2018.09.022  1
2018 Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, et al. Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications. 9: 1818. PMID 29720582 DOI: 10.1038/s41467-018-04281-x  0.36
2018 Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, et al. A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications. 9: 1409. PMID 29651114 DOI: 10.1038/s41467-018-03851-3  0.36
2017 Estrada-Johnson E, Csukasi F, Pizarro CM, Vallarino JG, Kiryakova Y, Vioque A, Merchante C, Brumos J, Medina-Escobar N, Botella MA, Alonso JM, Fernie AR, Sánchez-Sevilla JF, Osorio S, Valpuesta V. Corrigendum: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science. 8: 1305. PMID 28744303 DOI: 10.3389/fpls.2017.01305  0.68
2017 Estrada-Johnson E, Csukasi F, Pizarro CM, Vallarino JG, Kiryakova Y, Vioque A, Brumos J, Medina-Escobar N, Botella MA, Alonso JM, Fernie AR, Sánchez-Sevilla JF, Osorio S, Valpuesta V. Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science. 8: 889. PMID 28611805 DOI: 10.3389/fpls.2017.00889  0.36
2017 Merchante C, Stepanova AN, Alonso JM. Translation regulation in plants: an interesting past, an exciting present, and a promising future. The Plant Journal : For Cell and Molecular Biology. PMID 28244193 DOI: 10.1111/tpj.13520  1
2016 Stepanova AN, Alonso JM. Cutting Out the Middle Man in Light-Hormone Interactions. Developmental Cell. 39: 524-526. PMID 27923118 DOI: 10.1016/j.devcel.2016.11.013  1
2016 Stepanova AN, Alonso JM. Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27651487 DOI: 10.1073/pnas.1613506113  1
2016 Hu Q, Merchante C, Stepanova A, Alonso J, Heber S. Genome-wide Search for Translated Upstream Open Reading Frames in Arabidopsis thaliana. Ieee Transactions On Nanobioscience. PMID 26886998 DOI: 10.1109/TNB.2016.2516950  0.68
2015 Merchante C, Brumos J, Yun J, Hu Q, Spencer KR, Enríquez P, Binder BM, Heber S, Stepanova AN, Alonso JM. Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2. Cell. 163: 684-97. PMID 26496608 DOI: 10.1016/j.cell.2015.09.036  1
2015 Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiology. 167: 381-93. PMID 25535279 DOI: 10.1104/pp.114.249003  0.92
2015 Alonso JM, Stepanova AN. A recombineering-based gene tagging system for Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1227: 233-43. PMID 25239749 DOI: 10.1007/978-1-4939-1652-8_11  1
2014 Catalá R, López-Cobollo R, Mar Castellano M, Angosto T, Alonso JM, Ecker JR, Salinas J. The Arabidopsis 14-3-3 protein RARE COLD INDUCIBLE 1A links low-temperature response and ethylene biosynthesis to regulate freezing tolerance and cold acclimation. The Plant Cell. 26: 3326-42. PMID 25122152 DOI: 10.1105/tpc.114.127605  0.92
2014 Band LR, Wells DM, Fozard JA, Ghetiu T, French AP, Pound MP, Wilson MH, Yu L, Li W, Hijazi HI, Oh J, Pearce SP, Perez-Amador MA, Yun J, Kramer E, ... Alonso JM, et al. Systems analysis of auxin transport in the Arabidopsis root apex. The Plant Cell. 26: 862-75. PMID 24632533 DOI: 10.1105/tpc.113.119495  0.92
2013 Robert HS, Grones P, Stepanova AN, Robles LM, Lokerse AS, Alonso JM, Weijers D, Friml J. Local auxin sources orient the apical-basal axis in Arabidopsis embryos. Current Biology : Cb. 23: 2506-12. PMID 24291089 DOI: 10.1016/j.cub.2013.09.039  0.92
2013 Pietra S, Gustavsson A, Kiefer C, Kalmbach L, Hörstedt P, Ikeda Y, Stepanova AN, Alonso JM, Grebe M. Arabidopsis  SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity. Nature Communications. 4: 2779. PMID 24240534 DOI: 10.1038/ncomms3779  1
2013 Hill K, Mathews DE, Kim HJ, Street IH, Wildes SL, Chiang YH, Mason MG, Alonso JM, Ecker JR, Kieber JJ, Schaller GE. Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiology. 162: 212-24. PMID 23482873 DOI: 10.1104/pp.112.208736  0.92
2009 Tsuchisaka A, Yu G, Jin H, Alonso JM, Ecker JR, Zhang X, Gao S, Theologis A. A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics. 183: 979-1003. PMID 19752216 DOI: 10.1534/genetics.109.107102  0.92
2008 Hu J, Mitchum MG, Barnaby N, Ayele BT, Ogawa M, Nam E, Lai WC, Hanada A, Alonso JM, Ecker JR, Swain SM, Yamaguchi S, Kamiya Y, Sun TP. Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. The Plant Cell. 20: 320-36. PMID 18310462 DOI: 10.1105/tpc.107.057752  0.92
2008 Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH. The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. The Plant Cell. 20: 337-52. PMID 18252845 DOI: 10.1105/tpc.107.052142  0.92
2007 Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome Cell. 131: 1340-1353. PMID 18160042 DOI: 10.1016/j.cell.2007.10.056  0.92
2007 O'Malley RC, Alonso JM, Kim CJ, Leisse TJ, Ecker JR. An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nature Protocols. 2: 2910-7. PMID 18007627 DOI: 10.1038/nprot.2007.425  0.92
2007 Li H, He Z, Lu G, Lee SC, Alonso J, Ecker JR, Luan S. A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis. The Plant Cell. 19: 2403-16. PMID 17704213 DOI: 10.1105/tpc.107.053579  0.92
2006 Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. The Plant Cell. 18: 3073-87. PMID 17122069 DOI: 10.1105/tpc.106.045674  0.92
2006 Kim SA, Punshon T, Lanzirotti A, Li L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML. Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science (New York, N.Y.). 314: 1295-8. PMID 17082420 DOI: 10.1126/science.1132563  0.92
2006 Mori IC, Murata Y, Yang Y, Munemasa S, Wang YF, Andreoli S, Tiriac H, Alonso JM, Harper JF, Ecker JR, Kwak JM, Schroeder JI. CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. Plos Biology. 4: e327. PMID 17032064 DOI: 10.1371/journal.pbio.0040327  0.92
2006 Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. Journal of Experimental Botany. 57: 2697-708. PMID 16829549 DOI: 10.1093/jxb/erl035  0.92
2006 Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C. PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proceedings of the National Academy of Sciences of the United States of America. 103: 10134-9. PMID 16777956 DOI: 10.1073/pnas.0603799103  0.92
2006 Rudella A, Friso G, Alonso JM, Ecker JR, van Wijk KJ. Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. The Plant Cell. 18: 1704-21. PMID 16766689 DOI: 10.1105/tpc.106.042861  0.92
2006 Alonso JM, Ecker JR. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature Reviews. Genetics. 7: 524-36. PMID 16755288 DOI: 10.1038/nrg1893  0.92
2005 Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. The Plant Cell. 17: 3282-300. PMID 16284307 DOI: 10.1105/tpc.105.036723  0.92
2005 Mason MG, Mathews DE, Argyros DA, Maxwell BB, Kieber JJ, Alonso JM, Ecker JR, Schaller GE. Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. The Plant Cell. 17: 3007-18. PMID 16227453 DOI: 10.1105/tpc.105.035451  0.92
2005 Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (Cambridge, England). 132: 4107-18. PMID 16107481 DOI: 10.1242/dev.01955  0.92
2005 Wilmoth JC, Wang S, Tiwari SB, Joshi AD, Hagen G, Guilfoyle TJ, Alonso JM, Ecker JR, Reed JW. NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. The Plant Journal : For Cell and Molecular Biology. 43: 118-30. PMID 15960621 DOI: 10.1111/j.1365-313X.2005.02432.x  0.92
2005 Ryu JS, Kim JI, Kunkel T, Kim BC, Cho DS, Hong SH, Kim SH, Fernández AP, Kim Y, Alonso JM, Ecker JR, Nagy F, Lim PO, Song PS, Schäfer E, et al. Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell. 120: 395-406. PMID 15707897 DOI: 10.1016/j.cell.2004.12.019  0.92
2005 Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. The Plant Cell. 17: 444-63. PMID 15659631 DOI: 10.1105/tpc.104.028316  0.92
2005 Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. The Plant Journal : For Cell and Molecular Biology. 41: 304-18. PMID 15634206 DOI: 10.1111/j.1365-313X.2004.02296.x  0.92
2005 Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN, Clark SE. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. The Plant Cell. 17: 61-76. PMID 15598805 DOI: 10.1105/tpc.104.026161  0.92
2004 Monte E, Tepperman JM, Al-Sady B, Kaczorowski KA, Alonso JM, Ecker JR, Li X, Zhang Y, Quail PH. The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proceedings of the National Academy of Sciences of the United States of America. 101: 16091-8. PMID 15505214 DOI: 10.1073/pnas.0407107101  0.92
2004 Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12759-64. PMID 15310842 DOI: 10.1073/pnas.0404552101  0.92
2004 Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR. Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Developmental Cell. 7: 193-204. PMID 15296716 DOI: 10.1016/j.devcel.2004.07.002  0.92
2004 Pfund C, Tans-Kersten J, Dunning FM, Alonso JM, Ecker JR, Allen C, Bent AF. Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana. Molecular Plant-Microbe Interactions : Mpmi. 17: 696-706. PMID 15195952 DOI: 10.1094/MPMI.2004.17.6.696  0.92
2004 Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiology. 135: 907-15. PMID 15181210 DOI: 10.1104/pp.104.038992  0.92
2004 Tyler L, Thomas SG, Hu J, Dill A, Alonso JM, Ecker JR, Sun TP. Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiology. 135: 1008-19. PMID 15173565 DOI: 10.1104/pp.104.039578  0.92
2004 Page ML, Hamel PP, Gabilly ST, Zegzouti H, Perea JV, Alonso JM, Ecker JR, Theg SM, Christensen SK, Merchant S. A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. The Journal of Biological Chemistry. 279: 32474-82. PMID 15159384 DOI: 10.1074/jbc.M404285200  0.92
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