Justin Borevitz - Publications

Affiliations: 
Australian National University, Acton, Australian Capital Territory, Australia 
Website:
http://biology.anu.edu.au/research/labs/borevitz-lab-plant-genomics-climate-adaption

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP, Contributors A, Vogel JP, Borevitz JO. Global Diversity of the Brachypodium Species Complex as a Resource for Genome Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate. Genetics. PMID 30446522 DOI: 10.1534/genetics.118.301589  0.52
2017 Murray KD, Webers C, Ong CS, Borevitz J, Warthmann N. kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity. Plos Computational Biology. 13: e1005727. PMID 28873405 DOI: 10.1371/journal.pcbi.1005727  0.52
2016 Kantarski T, Larson S, Zhang X, DeHaan L, Borevitz J, Anderson J, Poland J. Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27738715 DOI: 10.1007/s00122-016-2799-7  0.32
2016 Crisp PA, Ganguly D, Eichten SR, Borevitz JO, Pogson BJ. Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics. Science Advances. 2: e1501340. PMID 26989783 DOI: 10.1126/sciadv.1501340  0.64
2016 Nicotra AB, Chong C, Bragg JG, Ong CR, Aitken NC, Chuah A, Lepschi B, Borevitz JO. Population and phylogenomic decomposition via Genotyping-By-Sequencing in Australian Pelargonium. Molecular Ecology. PMID 26864117 DOI: 10.1111/mec.13584  0.64
2015 Bragg JG, Supple MA, Andrew RL, Borevitz JO. Genomic variation across landscapes: insights and applications. The New Phytologist. PMID 25904408 DOI: 10.1111/nph.13410  0.64
2015 Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM. Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology. Mycologia. 107: 217-26. PMID 25361831 DOI: 10.3852/13-278  0.64
2014 Cazzonelli CI, Nisar N, Roberts AC, Murray KD, Borevitz JO, Pogson BJ. A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation. Frontiers in Plant Science. 5: 533. PMID 25374573 DOI: 10.3389/fpls.2014.00533  0.64
2014 Grabowski PP, Morris GP, Casler MD, Borevitz JO. Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass. Molecular Ecology. 23: 4059-73. PMID 24962137 DOI: 10.1111/mec.12845  0.64
2014 Brown TB, Cheng R, Sirault XR, Rungrat T, Murray KD, Trtilek M, Furbank RT, Badger M, Pogson BJ, Borevitz JO. TraitCapture: genomic and environment modelling of plant phenomic data. Current Opinion in Plant Biology. 18: 73-9. PMID 24646691 DOI: 10.1016/j.pbi.2014.02.002  0.64
2014 Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiology. 165: 175-85. PMID 24623850 DOI: 10.1104/pp.113.233213  0.64
2014 Li Y, Cheng R, Spokas KA, Palmer AA, Borevitz JO. Genetic variation for life history sensitivity to seasonal warming in Arabidopsis thaliana. Genetics. 196: 569-77. PMID 24281156 DOI: 10.1534/genetics.113.157628  0.64
2014 Donoghue MT, Fort A, Clifton R, Zhang X, McKeown PC, Voigt-Zielinksi ML, Borevitz JO, Spillane C. C(m)CGG methylation-independent parent-of-origin effects on genome-wide transcript levels in isogenic reciprocal F1 triploid plants. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 21: 141-51. PMID 24212467 DOI: 10.1093/dnares/dst046  0.64
2013 Cheng R, Borevitz J, Doerge RW. Selecting informative traits for multivariate quantitative trait locus mapping helps to gain optimal power. Genetics. 195: 683-91. PMID 23979571 DOI: 10.1534/genetics.113.155937  0.64
2013 Eichten S, Borevitz J. Epigenomics: Methylation's mark on inheritance Nature. 495: 181-183. PMID 23467093 DOI: 10.1038/nature11960  0.64
2012 Brown T, Zimmermann C, Panneton W, Noah N, Borevitz J. High-resolution, time-lapse imaging for ecosystem-scale phenotyping in the field Methods in Molecular Biology (Clifton, N.J.). 918: 71-96. PMID 22893287 DOI: 10.1007/978-1-61779-995-2_7  0.64
2012 He F, Zhang X, Hu J, Turck F, Dong X, Goebel U, Borevitz J, De Meaux J. Genome-wide analysis of cis-regulatory divergence between species in the arabidopsis genus Molecular Biology and Evolution. 29: 3385-3395. PMID 22641789 DOI: 10.1093/molbev/mss146  0.64
2012 Zhang X, Hause RJ, Borevitz JO. Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana. G3 (Bethesda, Md.). 2: 29-34. PMID 22384379 DOI: 10.1534/g3.111.001487  0.64
2012 Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics. 44: 212-6. PMID 22231484 DOI: 10.1038/ng.1042  0.64
2012 He F, Zhang X, Hu JY, Turck F, Dong X, Goebel U, Borevitz JO, de Meaux J. Widespread interspecific divergence in cis-regulation of transposable elements in the Arabidopsis genus. Molecular Biology and Evolution. 29: 1081-91. PMID 22086904 DOI: 10.1093/molbev/msr281  0.64
2011 Morris GP, Grabowski PP, Borevitz JO. Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape. Molecular Ecology. 20: 4938-52. PMID 22060816 DOI: 10.1111/j.1365-294X.2011.05335.x  0.64
2011 Brachi B, Morris GP, Borevitz JO. Genome-wide association studies in plants: the missing heritability is in the field. Genome Biology. 12: 232. PMID 22035733 DOI: 10.1186/gb-2011-12-10-232  0.64
2011 Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M. Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. Database : the Journal of Biological Databases and Curation. 2011: bar014. PMID 21609965 DOI: 10.1093/database/bar014  0.64
2011 Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J. Source verification of mis-identified Arabidopsis thaliana accessions. The Plant Journal : For Cell and Molecular Biology. 67: 554-66. PMID 21481029 DOI: 10.1111/j.1365-313X.2011.04606.x  0.64
2011 Zhang X, Cal AJ, Borevitz JO. Genetic architecture of regulatory variation in Arabidopsis thaliana. Genome Research. 21: 725-33. PMID 21467266 DOI: 10.1101/gr.115337.110  0.64
2010 Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O, Salt DE. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. Plos Genetics. 6: e1001193. PMID 21085628 DOI: 10.1371/journal.pgen.1001193  0.64
2010 Li Y, Huang Y, Bergelson J, Nordborg M, Borevitz JO. Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 21199-204. PMID 21078970 DOI: 10.1073/pnas.1007431107  0.64
2010 Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG, Brown JW, Cerdán PD, Borevitz JO, Mas P, Ceriani MF, et al. A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468: 112-6. PMID 20962777 DOI: 10.1038/nature09470  0.64
2010 Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465: 632-6. PMID 20520716 DOI: 10.1038/nature09083  0.64
2010 Voelckel C, Borevitz JO, Kramer EM, Hodges SA. Within and between whorls: comparative transcriptional profiling of Aquilegia and Arabidopsis. Plos One. 5: e9735. PMID 20352114 DOI: 10.1371/journal.pone.0009735  0.64
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Borevitz JO, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/nature08800  0.64
2010 Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, ... ... Borevitz JO, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/journal.pgen.1000843  0.64
2009 Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 183: 723-32, 1SI-7SI. PMID 19652183 DOI: 10.1534/genetics.109.104984  0.64
2009 Zhang X, Borevitz JO. Global analysis of allele-specific expression in Arabidopsis thaliana. Genetics. 182: 943-54. PMID 19474198 DOI: 10.1534/genetics.109.103499  0.64
2009 Baxter I, Hosmani PS, Rus A, Lahner B, Borevitz JO, Muthukumar B, Mickelbart MV, Schreiber L, Franke RB, Salt DE. Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. Plos Genetics. 5: e1000492. PMID 19461889 DOI: 10.1371/journal.pgen.1000492  0.64
2009 Williams R, Lim JE, Harr B, Wing C, Walters R, Distler MG, Teschke M, Wu C, Wiltshire T, Su AI, Sokoloff G, Tarantino LM, Borevitz JO, Palmer AA. A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior. Plos One. 4: e4649. PMID 19266052 DOI: 10.1371/journal.pone.0004649  0.64
2009 Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biology. 10: R17. PMID 19210792 DOI: 10.1186/gb-2009-10-2-r17  0.64
2009 Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. Plos One. 4: e4318. PMID 19183806 DOI: 10.1371/journal.pone.0004318  0.64
2008 Zhang X, Byrnes JK, Gal TS, Li WH, Borevitz JO. Whole genome transcriptome polymorphisms in Arabidopsis thaliana. Genome Biology. 9: R165. PMID 19025653 DOI: 10.1186/gb-2008-9-11-r165  0.64
2008 Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science (New York, N.Y.). 320: 1629-31. PMID 18535209 DOI: 10.1126/science.1158078  0.64
2008 Zhang X, Shiu SH, Shiu S, Cal A, Borevitz JO. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. Plos Genetics. 4: e1000032. PMID 18369451 DOI: 10.1371/journal.pgen.1000032  0.64
2008 Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proceedings of the National Academy of Sciences of the United States of America. 105: 3157-62. PMID 18287016 DOI: 10.1073/pnas.0712174105  0.64
2007 Jones-Rhoades MW, Borevitz JO, Preuss D. Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. Plos Genetics. 3: 1848-61. PMID 17937500 DOI: 10.1371/journal.pgen.0030171  0.64
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/pnas.0705323104  0.64
2007 Hanada K, Zhang X, Borevitz JO, Li WH, Shiu SH. A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection. Genome Research. 17: 632-40. PMID 17395691 DOI: 10.1101/gr.5836207  0.64
2007 Smemo S, Borevitz JO. Redundancy in genotyping arrays. Plos One. 2: e287. PMID 17356697 DOI: 10.1371/journal.pone.0000287  0.64
2007 Zhang X, Richards EJ, Borevitz JO. Genetic and epigenetic dissection of cis regulatory variation. Current Opinion in Plant Biology. 10: 142-8. PMID 17300985 DOI: 10.1016/j.pbi.2007.02.002  0.64
2006 Li Y, Roycewicz P, Smith E, Borevitz JO. Genetics of local adaptation in the laboratory: flowering time quantitative trait loci under geographic and seasonal conditions in Arabidopsis. Plos One. 1: e105. PMID 17205109 DOI: 10.1371/journal.pone.0000105  0.64
2006 Gilad Y, Borevitz J. Using DNA microarrays to study natural variation. Current Opinion in Genetics & Development. 16: 553-8. PMID 17008090 DOI: 10.1016/j.gde.2006.09.005  0.64
2006 Baxter IR, Borevitz JO. Mapping a plant's chemical vocabulary. Nature Genetics. 38: 737-8. PMID 16804534 DOI: 10.1038/ng0706-737  0.64
2006 Kidgell C, Volkman SK, Daily J, Borevitz JO, Plouffe D, Zhou Y, Johnson JR, Le Roch K, Sarr O, Ndir O, Mboup S, Batalov S, Wirth DF, Winzeler EA. A systematic map of genetic variation in Plasmodium falciparum. Plos Pathogens. 2: e57. PMID 16789840 DOI: 10.1371/journal.ppat.0020057  0.64
2006 Borevitz J. Genotyping and mapping with high-density oligonucleotide arrays Methods in Molecular Biology (Clifton, N.J.). 323: 137-145. PMID 16739574  0.64
2006 Jiang R, Marjoram P, Borevitz JO, Tavaré S. Inferring population parameters from single-feature polymorphism data. Genetics. 173: 2257-67. PMID 16702439 DOI: 10.1534/genetics.105.047472  0.64
2006 Kim SK, Borevitz J. Mining the HapMap to dissect complex traits Genome Biology. 7. PMID 16569264 DOI: 10.1186/gb-2006-7-3-310  0.64
2006 Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. Association mapping with single-feature polymorphisms. Genetics. 173: 1125-33. PMID 16510789 DOI: 10.1534/genetics.105.052720  0.64
2005 Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 102: 10387-92. PMID 16006522 DOI: 10.1073/pnas.0503029102  0.64
2005 Rostoks N, Borevitz JO, Hedley PE, Russell J, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R. Single-feature polymorphism discovery in the barley transcriptome. Genome Biology. 6: R54. PMID 15960806 DOI: 10.1186/gb-2005-6-6-r54  0.64
2005 Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 170: 1197-207. PMID 15911588 DOI: 10.1534/genetics.104.036533  0.64
2005 Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiology. 138: 990-7. PMID 15908595 DOI: 10.1104/pp.105.061408  0.64
2005 Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America. 102: 2460-5. PMID 15695584 DOI: 10.1073/pnas.0409474102  0.64
2004 Borevitz JO, Ecker JR. Plant genomics: the third wave. Annual Review of Genomics and Human Genetics. 5: 443-77. PMID 15485356 DOI: 10.1146/annurev.genom.5.061903.180017  0.64
2004 Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics. 167: 907-17. PMID 15238539 DOI: 10.1534/genetics.103.024810  0.64
2004 Borevitz JO, Chory J. Genomics tools for QTL analysis and gene discovery. Current Opinion in Plant Biology. 7: 132-6. PMID 15003212 DOI: 10.1016/j.pbi.2004.01.011  0.64
2004 Xia Y, Suzuki H, Borevitz J, Blount J, Guo Z, Patel K, Dixon RA, Lamb C. An extracellular aspartic protease functions in Arabidopsis disease resistance signaling Embo Journal. 23: 980-988. PMID 14765119 DOI: 10.1038/sj.emboj.7600086  0.64
2003 Borevitz JO, Nordborg M. The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiology. 132: 718-25. PMID 12805600 DOI: 10.1104/pp.103.023549  0.64
2003 Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research. 13: 513-23. PMID 12618383 DOI: 10.1101/gr.541303  0.64
2002 Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics. 160: 683-96. PMID 11861571  0.64
2002 Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/ng813  0.64
2001 Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J. Natural variation in light sensitivity of Arabidopsis. Nature Genetics. 29: 441-6. PMID 11726931 DOI: 10.1038/ng777  0.64
2000 Maloof JN, Borevitz JO, Weigel D, Chory J. Natural variation in phytochrome signaling. Seminars in Cell & Developmental Biology. 11: 523-30. PMID 11145882 DOI: 10.1006/scdb.2000.0198  0.64
2000 Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, et al. Activation tagging in Arabidopsis. Plant Physiology. 122: 1003-13. PMID 10759496  0.64
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