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Year Citation  Score
2021 Ichino L, Boone BA, Strauskulage L, Harris CJ, Kaur G, Gladstone MA, Tan M, Feng S, Jami-Alahmadi Y, Duttke SH, Wohlschlegel JA, Cheng X, Redding S, Jacobsen SE. MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science (New York, N.Y.). PMID 34083448 DOI: 10.1126/science.abg6130  1
2021 Ghoshal B, Picard CL, Vong B, Feng S, Jacobsen SE. CRISPR-based targeting of DNA methylation in by a bacterial CG-specific DNA methyltransferase. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074795 DOI: 10.1073/pnas.2125016118  1
2021 Liu W, Gallego-Bartolomé J, Zhou Y, Zhong Z, Wang M, Wongpalee SP, Gardiner J, Feng S, Kuo PH, Jacobsen SE. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. Nature Communications. 12: 3130. PMID 34035251 DOI: 10.1038/s41467-021-23346-y  1
2021 Bourguet P, Picard CL, Yelagandula R, Pélissier T, Lorković ZJ, Feng S, Pouch-Pélissier MN, Schmücker A, Jacobsen SE, Berger F, Mathieu O. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nature Communications. 12: 2683. PMID 33976212 DOI: 10.1038/s41467-021-22993-5  1
2021 Choi CP, Tay RJ, Starostik MR, Feng S, Moresco JJ, Montgomery BE, Xu E, Hammonds MA, Schatz MC, Montgomery TA, Yates JR, Jacobsen SE, Kim JK. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in . Elife. 10. PMID 33587037 DOI: 10.7554/eLife.60681  1
2021 Zhang Z, Wang H, Wang Y, Xi F, Wang H, Kohnen MV, Gao P, Wei W, Chen K, Liu X, Gao Y, Han X, Hu K, Zhang H, Zhu Q, ... ... Jacobsen SE, et al. Whole genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. The Plant Journal : For Cell and Molecular Biology. PMID 33506534 DOI: 10.1111/tpj.15174  0.68
2021 Zhong Z, Feng S, Duttke SH, Potok ME, Zhang Y, Gallego-Bartolomé J, Liu W, Jacobsen SE. DNA methylation-linked chromatin accessibility affects genomic architecture in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33495321 DOI: 10.1073/pnas.2023347118  1
2020 Ghoshal B, Vong B, Picard CL, Feng S, Tam JM, Jacobsen SE. A viral guide RNA delivery system for CRISPR-based transcriptional activation and heritable targeted DNA demethylation in Arabidopsis thaliana. Plos Genetics. 16: e1008983. PMID 33315895 DOI: 10.1371/journal.pgen.1008983  1
2020 Bourguet P, López-González L, Gómez-Zambrano Á, Pélissier T, Hesketh A, Potok ME, Pouch-Pélissier MN, Perez M, Da Ines O, Latrasse D, White CI, Jacobsen SE, Benhamed M, Mathieu O. DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis. Genome Biology. 21: 283. PMID 33234150 DOI: 10.1186/s13059-020-02190-1  1
2020 Feng S, Zhong Z, Wang M, Jacobsen SE. Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing. Epigenetics & Chromatin. 13: 42. PMID 33028374 DOI: 10.1186/s13072-020-00361-9  1
2020 Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nature Communications. 11: 2887. PMID 32513971 DOI: 10.1038/S41467-020-16691-X  1
2020 Liu Q, Bischof S, Harris CJ, Zhong Z, Zhan L, Nguyen C, Rashoff A, Barshop WD, Sun F, Feng S, Potok M, Gallego-Bartolome J, Zhai J, Wohlschlegel JA, Carey MF, ... ... Jacobsen SE, et al. The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis. Nature Communications. 11: 2798. PMID 32493925 DOI: 10.1038/S41467-020-16651-5  1
2020 Nicolau M, Picault N, Descombin J, Jami-Alahmadi Y, Feng S, Bucher E, Jacobsen SE, Deragon JM, Wohlschlegel J, Moissiard G. The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana. Plos Genetics. 16: e1008324. PMID 32287271 DOI: 10.1371/Journal.Pgen.1008324  1
2020 Venkei ZG, Choi C, Feng S, Chen C, Jacobsen SE, Kim JK, Yamashita YM. A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage. Plos Genetics. 16: e1008648. PMID 32168327 DOI: 10.1371/Journal.Pgen.1008648  1
2019 Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE. CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nature Communications. 10: 3916. PMID 31477705 DOI: 10.1038/S41467-019-11759-9  1
2019 Kim H, Yen L, Wongpalee SP, Kirshner JA, Mehta N, Xue Y, Johnston JB, Burlingame AL, Kim JK, Loparo JJ, Jacobsen SE. The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction. Molecular Cell. 75: 700-710.e6. PMID 31442422 DOI: 10.1016/J.Molcel.2019.07.032  0.6
2019 Potok ME, Wang Y, Xu L, Zhong Z, Liu W, Feng S, Naranbaatar B, Rayatpisheh S, Wang Z, Wohlschlegel JA, Ausin I, Jacobsen SE. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. Nature Communications. 10: 3352. PMID 31350403 DOI: 10.1038/S41467-019-11291-W  1
2019 Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Developmental Cell. PMID 31105011 DOI: 10.1016/J.Devcel.2019.04.030  1
2019 Chen M, Liu Q, Gao SS, Young AE, Jacobsen SE, Tang Y. Genome mining and biosynthesis of a polyketide from a biofertilizer fungus that can facilitate reductive iron assimilation in plant. Proceedings of the National Academy of Sciences of the United States of America. PMID 30842286 DOI: 10.1073/Pnas.1819998116  0.84
2019 Papikian A, Liu W, Gallego-Bartolomé J, Jacobsen SE. Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems. Nature Communications. 10: 729. PMID 30760722 DOI: 10.1038/S41467-019-08736-7  1
2019 Gallego-Bartolomé J, Liu W, Kuo PH, Feng S, Ghoshal B, Gardiner J, Zhao JM, Park SY, Chory J, Jacobsen SE. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. Cell. PMID 30739798 DOI: 10.1016/J.Cell.2019.01.029  1
2018 Chen D, Liu W, Zimmerman J, Pastor WA, Kim R, Hosohama L, Ho J, Aslanyan M, Gell JJ, Jacobsen SE, Clark AT. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation. Cell Reports. 25: 3591-3602.e5. PMID 30590035 DOI: 10.1016/J.Celrep.2018.12.011  1
2018 Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, Zhong Z, Yen L, Barshop WD, Rayatpisheh S, Gallego-Bartolome J, Groth M, ... ... Jacobsen SE, et al. A DNA methylation reader complex that enhances gene transcription. Science (New York, N.Y.). 362: 1182-1186. PMID 30523112 DOI: 10.1126/Science.Aar7854  1
2018 Harris CJ, Jacobsen SE. ADCP1: a novel plant H3K9me2 reader. Cell Research. PMID 30514899 DOI: 10.1038/S41422-018-0119-2  0.76
2018 Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/J.Molcel.2018.10.006  1
2018 Yan Y, Liu Q, Jacobsen SE, Tang Y. The impact and prospect of natural product discovery in agriculture: New technologies to explore the diversity of secondary metabolites in plants and microorganisms for applications in agriculture. Embo Reports. PMID 30361392 DOI: 10.15252/Embr.201846824  0.84
2018 Li X, Harris CJ, Zhong Z, Chen W, Liu R, Jia B, Wang Z, Li S, Jacobsen SE, Du J. Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30150382 DOI: 10.1073/Pnas.1809841115  1
2018 Yan Y, Liu Q, Zang X, Yuan S, Bat-Erdene U, Nguyen C, Gan J, Zhou J, Jacobsen SE, Tang Y. Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action. Nature. PMID 29995859 DOI: 10.1038/S41586-018-0319-4  0.84
2018 Orozco LD, Farrell C, Hale C, Rubbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Boehnke M, Mohlke KL, Jacobsen S, Kuusisto J, et al. Epigenome-wide association in adipose tissue from the METSIM cohort. Human Molecular Genetics. PMID 29893869 DOI: 10.1093/Hmg/Ddy205  1
2018 Pastor WA, Liu W, Chen D, Ho J, Kim R, Hunt TJ, Lukianchikov A, Liu X, Polo JM, Jacobsen SE, Clark AT. TFAP2C regulates transcription in human naive pluripotency by opening enhancers. Nature Cell Biology. 20: 553-564. PMID 29695788 DOI: 10.1038/S41556-018-0089-0  1
2018 Orozco LD, Farrell C, Hale C, Rbi L, Rinaldi A, Civelek M, Pan C, Lam L, Montoya D, Edillor C, Seldin M, Mohlke KL, Jacobsen S, Kuusisto J, Laakso M, et al. Epigenome-wide association in adipose tissue from the METSIM cohort. Human Molecular Genetics. PMID 29566149 DOI: 10.1093/Hmg/Ddy093  1
2018 Gallego-Bartolomé J, Gardiner J, Liu W, Papikian A, Ghoshal B, Kuo HY, Zhao JM, Segal DJ, Jacobsen SE. Targeted DNA demethylation of thegenome using the human TET1 catalytic domain. Proceedings of the National Academy of Sciences of the United States of America. PMID 29444862 DOI: 10.1073/Pnas.1716945115  1
2018 Liu W, Duttke SH, Hetzel J, Groth M, Feng S, Gallego-Bartolome J, Zhong Z, Kuo HY, Wang Z, Zhai J, Chory J, Jacobsen SE. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. Nature Plants. PMID 29379150 DOI: 10.1038/S41477-017-0100-Y  1
2018 Zhang Y, Harris CJ, Liu Q, Liu W, Ausin I, Long Y, Xiao L, Feng L, Chen X, Xie Y, Chen X, Zhan L, Feng S, Li JJ, Wang H, ... ... Jacobsen SE, et al. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339507 DOI: 10.1073/Pnas.1716300115  1
2017 Chen D, Liu W, Lukianchikov A, Hancock G, Zimmerman J, Lowe M, Kim R, Galic Z, Irie N, Surani MA, Jacobsen SE, Clark AT. Germline competency of human embryonic stem cells depends on EOMESODERMIN. Biology of Reproduction. PMID 29091993 DOI: 10.1093/Biolre/Iox138  0.84
2017 Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 6. PMID 28858608 DOI: 10.7554/Elife.30948  1
2017 Weiser NE, Yang DX, Feng S, Kalinava N, Brown KC, Khanikar J, Freeberg MA, Snyder MJ, Csankovszki G, Chan RC, Gu SG, Montgomery TA, Jacobsen SE, Kim JK. MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality. Developmental Cell. 41: 408-423.e7. PMID 28535375 DOI: 10.1016/J.Devcel.2017.04.023  1
2017 Wollmann H, Stroud H, Yelagandula R, Tarutani Y, Jiang D, Jing L, Jamge B, Takeuchi H, Holec S, Nie X, Kakutani T, Jacobsen SE, Berger F. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Genome Biology. 18: 94. PMID 28521766 DOI: 10.1186/S13059-017-1221-3  1
2017 Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 543: 136. PMID 28178234 DOI: 10.1038/Nature21398  1
2017 Feng W, Hale CJ, Over RS, Cokus SJ, Jacobsen SE, Michaels SD. Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage. Proceedings of the National Academy of Sciences of the United States of America. 114: 406-411. PMID 28028228 DOI: 10.1073/Pnas.1619774114  1
2016 Lahmy S, Pontier D, Bies-Etheve N, Laudié M, Feng S, Jobet E, Hale CJ, Cooke R, Hakimi MA, Angelov D, Jacobsen SE, Lagrange T. Evidence for ARGONAUTE4-DNA interactions in RNA-directed DNA methylation in plants. Genes & Development. 30: 2565-2570. PMID 27986858 DOI: 10.1101/Gad.289553.116  1
2016 Ausin I, Feng S, Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE, Wang H. DNA methylome of the 20-gigabase Norway spruce genome. Proceedings of the National Academy of Sciences of the United States of America. 113: E8106-E8113. PMID 27911846 DOI: 10.1073/Pnas.1618019113  1
2016 Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proceedings of the National Academy of Sciences of the United States of America. 113: E5108-16. PMID 27528681 DOI: 10.1073/Pnas.1609709113  1
2016 Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, ... Jacobsen SE, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113  1
2016 Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra PA, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, ... ... Jacobsen SE, et al. MTHFD1 controls DNA methylation in Arabidopsis. Nature Communications. 7: 11640. PMID 27291711 DOI: 10.1038/Ncomms11640  1
2016 Hale CJ, Potok ME, Lopez J, Do T, Liu A, Gallego-Bartolome J, Michaels SD, Jacobsen SE. Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. Plos Genetics. 12: e1006092. PMID 27253878 DOI: 10.1371/Journal.Pgen.1006092  1
2016 Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dangl JL, Wohlschlegel JA, Jacobsen SE. Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes. Plos Genetics. 12: e1005998. PMID 27171361 DOI: 10.1371/Journal.Pgen.1005998  1
2016 Li S, Yang Z, Du X, Liu R, Wilkinson AW, Gozani O, Jacobsen SE, Patel DJ, Du J. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure (London, England : 1993). 24: 486-94. PMID 26876097 DOI: 10.1016/J.Str.2016.01.004  1
2016 Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT. Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory. Cell Stem Cell. 18: 323-329. PMID 26853856 DOI: 10.1016/J.Stem.2016.01.019  1
2015 Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discovery. 1. PMID 26617990 DOI: 10.1038/Celldisc.2015.3  1
2015 Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proceedings of the National Academy of Sciences of the United States of America. 112: 13729-34. PMID 26483493 DOI: 10.1073/Pnas.1519067112  1
2015 Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032  1
2015 Du J, Johnson LM, Jacobsen SE, Patel DJ. DNA methylation pathways and their crosstalk with histone methylation. Nature Reviews. Molecular Cell Biology. 16: 519-32. PMID 26296162 DOI: 10.1038/Nrm4043  1
2015 Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. Erratum: MORC1 represses transposable elements in the mouse male germline. Nature Communications. 6: 7604. PMID 26159654 DOI: 10.1038/Ncomms8604  1
2015 Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 4: e06205. PMID 25848745 DOI: 10.7554/Elife.06205  1
2015 Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: 911-6. PMID 25561521 DOI: 10.1073/Pnas.1423603112  1
2015 Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, ... ... Jacobsen SE, et al. Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proceedings of the National Academy of Sciences of the United States of America. 112: 76-81. PMID 25535376 DOI: 10.1073/Pnas.1421127112  1
2014 Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE. MORC1 represses transposable elements in the mouse male germline. Nature Communications. 5: 5795. PMID 25503965 DOI: 10.1038/Ncomms6795  1
2014 Groth M, Stroud H, Feng S, Greenberg MV, Vashisht AA, Wohlschlegel JA, Jacobsen SE, Ausin I. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 17666-71. PMID 25425661 DOI: 10.1073/Pnas.1420515111  1
2014 Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. Molecular Cell. 55: 694-707. PMID 25132175 DOI: 10.1016/J.Molcel.2014.07.008  1
2014 Du J, Johnson LM, Groth M, Feng S, Hale CJ, Li S, Vashisht AA, Wohlschlegel JA, Patel DJ, Jacobsen SE. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Molecular Cell. 55: 495-504. PMID 25018018 DOI: 10.1016/J.Molcel.2014.06.009  1
2014 Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 158: 98-109. PMID 24995981 DOI: 10.1016/J.Cell.2014.06.006  1
2014 Sequeira-Mendes J, Aragüez I, Peiró R, Mendez-Giraldez R, Zhang X, Jacobsen SE, Bastolla U, Gutierrez C. The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States. The Plant Cell. 26: 2351-2366. PMID 24934173 DOI: 10.1105/Tpc.114.124578  1
2014 Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 157: 1050-60. PMID 24855943 DOI: 10.1016/J.Cell.2014.03.056  1
2014 Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE. Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers. Proceedings of the National Academy of Sciences of the United States of America. 111: 7474-9. PMID 24799676 DOI: 10.1073/Pnas.1406611111  1
2014 Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 1361-6. PMID 24474761 DOI: 10.1073/Pnas.1322921111  0.4
2014 Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 507: 124-128. PMID 24463519 DOI: 10.1038/Nature12931  1
2014 Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nature Structural & Molecular Biology. 21: 64-72. PMID 24336224 DOI: 10.1038/Nsmb.2735  1
2014 Widman N, Feng S, Jacobsen SE, Pellegrini M. Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation. Epigenetics. 9: 236-42. PMID 24169618 DOI: 10.4161/Epi.26869  1
2013 Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE. Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 9: e1003946. PMID 24244201 DOI: 10.1371/Journal.Pgen.1003946  1
2013 Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proceedings of the National Academy of Sciences of the United States of America. 110: 12750-5. PMID 23852726 DOI: 10.1073/Pnas.1310735110  1
2013 Chen PY, Ganguly A, Rubbi L, Orozco LD, Morselli M, Ashraf D, Jaroszewicz A, Feng S, Jacobsen SE, Nakano A, Devaskar SU, Pellegrini M. Intrauterine calorie restriction affects placental DNA methylation and gene expression. Physiological Genomics. 45: 565-76. PMID 23695884 DOI: 10.1152/Physiolgenomics.00034.2013  1
2013 Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE. Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature. 498: 385-9. PMID 23636332 DOI: 10.1038/Nature12178  1
2013 Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE. Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife. 2: e00354. PMID 23539454 DOI: 10.7554/Elife.00354  1
2013 Vincent JJ, Huang Y, Chen PY, Feng S, Calvopiña JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell. 12: 470-8. PMID 23415914 DOI: 10.1016/J.Stem.2013.01.016  1
2013 Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T. A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Current Biology : Cb. 23: 345-50. PMID 23394836 DOI: 10.1016/J.Cub.2013.01.030  1
2013 Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 152: 352-64. PMID 23313553 DOI: 10.1016/J.Cell.2012.10.054  1
2012 Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE. Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. Plos Genetics. 8: e1003062. PMID 23209430 DOI: 10.1371/Journal.Pgen.1003062  1
2012 Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE. The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. Plos Genetics. 8: e1002995. PMID 23071452 DOI: 10.1371/Journal.Pgen.1002995  1
2012 Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 151: 167-80. PMID 23021223 DOI: 10.1016/J.Cell.2012.07.034  1
2012 Colomé-Tatché M, Cortijo S, Wardenaar R, Morgado L, Lahouze B, Sarazin A, Etcheverry M, Martin A, Feng S, Duvernois-Berthet E, Labadie K, Wincker P, Jacobsen SE, Jansen RC, Colot V, et al. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 16240-5. PMID 22988127 DOI: 10.1073/Pnas.1212955109  1
2012 Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nature Structural & Molecular Biology. 19: 870-5. PMID 22864289 DOI: 10.1038/Nsmb.2354  1
2012 Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE. DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. Plos Genetics. 8: e1002808. PMID 22792077 DOI: 10.1371/Journal.Pgen.1002808  1
2012 Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences of the United States of America. 109: 12040-5. PMID 22778444 DOI: 10.1073/Pnas.1209297109  1
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, ... ... Jacobsen S, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  1
2012 Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Jacobsen SE, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7  1
2012 Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, Lee TF, Feng S, Española SD, Meyers BC, Wohlschlegel JA, Patel DJ, Jacobsen SE. INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 8374-81. PMID 22592791 DOI: 10.1073/Pnas.1206638109  1
2012 Kinoshita T, Jacobsen SE. Opening the door to epigenetics in PCP. Plant & Cell Physiology. 53: 763-5. PMID 22566217 DOI: 10.1093/Pcp/Pcs061  1
2012 Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, ... ... Jacobsen SE, et al. MORC family ATPases required for heterochromatin condensation and gene silencing. Science (New York, N.Y.). 336: 1448-51. PMID 22555433 DOI: 10.1126/Science.1221472  1
2012 Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS. Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes & Development. 26: 945-57. PMID 22549957 DOI: 10.1101/Gad.182865.111  1
2012 Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 109: 5370-5. PMID 22431625 DOI: 10.1073/Pnas.1203145109  1
2012 Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R. DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proceedings of the National Academy of Sciences of the United States of America. 109: 4968-73. PMID 22416128 DOI: 10.1073/Pnas.1202392109  1
2012 Ausin I, Greenberg MV, Li CF, Jacobsen SE. The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics. 7: 29-33. PMID 22274613 DOI: 10.4161/Epi.7.1.18782  1
2012 Hale CJ, Jacobsen SE. Plant biology: Equal-parenting policy. Nature. 482: 42-4. PMID 22266937 DOI: 10.1038/Nature10869  1
2011 Law JA, Vashisht AA, Wohlschlegel JA, Jacobsen SE. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. Plos Genetics. 7: e1002195. PMID 21811420 DOI: 10.1371/Journal.Pgen.1002195  1
2011 Chen PY, Feng S, Joo JWJ, Jacobsen SE, Pellegrini M. A comparative analysis of DNA methylation across human embryonic stem cell lines Genome Biology. 12. PMID 21733148 DOI: 10.1186/gb-2011-12-7-r62  1
2011 Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE. 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biology. 12: R54. PMID 21689397 DOI: 10.1186/Gb-2011-12-6-R54  1
2011 Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. The Journal of Biological Chemistry. 286: 24685-93. PMID 21610077 DOI: 10.1074/Jbc.M110.217083  1
2011 Feng S, Rubbi L, Jacobsen SE, Pellegrini M. Determining DNA methylation profiles using sequencing. Methods in Molecular Biology (Clifton, N.J.). 733: 223-38. PMID 21431774 DOI: 10.1007/978-1-61779-089-8_16  1
2011 Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C. Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nature Structural & Molecular Biology. 18: 395-400. PMID 21297636 DOI: 10.1038/Nsmb.1988  1
2011 Rajakumara E, Law JA, Simanshu DK, Voigt P, Johnson LM, Reinberg D, Patel DJ, Jacobsen SE. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes & Development. 25: 137-52. PMID 21245167 DOI: 10.1101/Gad.1980311  1
2011 Yuan B, Zhang J, Wang H, Xiong L, Cai Q, Wang T, Jacobsen S, Pradhan S, Wang Y. 6-Thioguanine reactivates epigenetically silenced genes in acute lymphoblastic leukemia cells by facilitating proteasome-mediated degradation of DNMT1. Cancer Research. 71: 1904-11. PMID 21239472 DOI: 10.1158/0008-5472.Can-10-3430  1
2011 Feng S, Jacobsen SE. Epigenetic modifications in plants: an evolutionary perspective. Current Opinion in Plant Biology. 14: 179-86. PMID 21233005 DOI: 10.1016/J.Pbi.2010.12.002  1
2011 Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 6: 344-54. PMID 21150311 DOI: 10.4161/Epi.6.3.14242  1
2011 Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3, (vol 23, pg 4286, 2004) The Embo Journal. 30: 1874-1874. DOI: 10.1038/Emboj.2011.130  1
2010 Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 6: e1001182. PMID 21060858 DOI: 10.1371/Journal.Pgen.1001182  1
2010 Deleris A, Greenberg MV, Ausin I, Law RW, Moissiard G, Schubert D, Jacobsen SE. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. Embo Reports. 11: 950-5. PMID 21052090 DOI: 10.1038/Embor.2010.158  1
2010 Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science (New York, N.Y.). 330: 622-7. PMID 21030646 DOI: 10.1126/Science.1190614  1
2010 Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE. Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature. 466: 987-91. PMID 20631708 DOI: 10.1038/Nature09290  1
2010 Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, ... ... Jacobsen SE, et al. Relationship between nucleosome positioning and DNA methylation. Nature. 466: 388-92. PMID 20512117 DOI: 10.1038/Nature09147  1
2010 Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Current Biology : Cb. 20: 951-6. PMID 20409711 DOI: 10.1016/J.Cub.2010.03.062  1
2010 Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. Conservation and divergence of methylation patterning in plants and animals. Proceedings of the National Academy of Sciences of the United States of America. 107: 8689-94. PMID 20395551 DOI: 10.1073/Pnas.1002720107  1
2010 Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews. Genetics. 11: 204-20. PMID 20142834 DOI: 10.1038/Nrg2719  1
2010 Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature. 463: 1101-5. PMID 20098412 DOI: 10.1038/Nature08829  1
2010 Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. Accurate sodium bisulfite sequencing in plants. Epigenetics. 5: 47-9. PMID 20081358 DOI: 10.4161/Epi.5.1.10560  1
2010 Nowak P, Cole DC, Aulabaugh A, Bard J, Chopra R, Cowling R, Fan KY, Hu B, Jacobsen S, Jani M, Jin G, Lo MC, Malamas MS, Manas ES, Narasimhan R, et al. Discovery and initial optimization of 5,5'-disubstituted aminohydantoins as potent beta-secretase (BACE1) inhibitors. Bioorganic & Medicinal Chemistry Letters. 20: 632-5. PMID 19959359 DOI: 10.1016/j.bmcl.2009.11.052  0.44
2009 Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nature Structural & Molecular Biology. 16: 1325-7. PMID 19915591 DOI: 10.1038/Nsmb.1690  1
2009 Pradhan S, Chin HG, Estève PO, Jacobsen SE. SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics. 4: 383-7. PMID 19684477 DOI: 10.4161/Epi.4.6.9450  1
2009 Miura K, Agetsuma M, Kitano H, Yoshimura A, Matsuoka M, Jacobsen SE, Ashikari M. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 11218-23. PMID 19541604 DOI: 10.1073/Pnas.0901942106  1
2009 Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biology. 10: R62. PMID 19508735 DOI: 10.1186/Gb-2009-10-6-R62  1
2009 Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nature Structural & Molecular Biology. 16: 763-8. PMID 19503079 DOI: 10.1038/Nsmb.1611  1
2009 Law JA, Jacobsen SE. Molecular biology. Dynamic DNA methylation. Science (New York, N.Y.). 323: 1568-9. PMID 19299607 DOI: 10.1126/Science.1172782  1
2009 Estève PO, Chin HG, Benner J, Feehery GR, Samaranayake M, Horwitz GA, Jacobsen SE, Pradhan S. Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 5076-81. PMID 19282482 DOI: 10.1073/Pnas.0810362106  1
2009 Kim JK, Estève PO, Jacobsen SE, Pradhan S. UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Research. 37: 493-505. PMID 19056828 DOI: 10.1093/Nar/Gkn961  1
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  1
2008 Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. Plos Genetics. 4: e1000280. PMID 19043555 DOI: 10.1371/Journal.Pgen.1000280  1
2008 Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. Plos One. 3: e3156. PMID 18776934 DOI: 10.1371/Journal.Pone.0003156  1
2008 Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature. 455: 826-9. PMID 18772888 DOI: 10.1038/Nature07280  1
2008 Henderson IR, Jacobsen SE. Sequencing sliced ends reveals microRNA targets. Nature Biotechnology. 26: 881-2. PMID 18688239 DOI: 10.1038/Nbt0808-881  1
2008 Kraft E, Bostick M, Jacobsen SE, Callis J. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. The Plant Journal : For Cell and Molecular Biology. 56: 704-15. PMID 18643997 DOI: 10.1111/J.1365-313X.2008.03631.X  0.52
2008 Henderson IR, Jacobsen SE. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes & Development. 22: 1597-606. PMID 18559476 DOI: 10.1101/Gad.1667808  1
2008 Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 133: 939-43. PMID 18555767 DOI: 10.1016/J.Cell.2008.05.040  1
2008 Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 452: 215-9. PMID 18278030 DOI: 10.1038/Nature06745  1
2008 Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. Plos Genetics. 4: e27. PMID 18266474 DOI: 10.1371/Journal.Pgen.0040027  1
2007 El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T. Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes & Development. 21: 2539-44. PMID 17938239 DOI: 10.1101/Gad.451207  1
2007 Zhang X, Germann S, Blus BJ, Khorasanizadeh S, Gaudin V, Jacobsen SE. The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nature Structural & Molecular Biology. 14: 869-71. PMID 17676062 DOI: 10.1038/Nsmb1283  1
2007 Bostick M, Kim JK, Estève PO, Clark A, Pradhan S, Jacobsen SE. UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science (New York, N.Y.). 317: 1760-4. PMID 17673620 DOI: 10.1126/Science.1147939  1
2007 Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature. 447: 418-24. PMID 17522675 DOI: 10.1038/Nature05917  1
2007 Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. Plos Biology. 5: e129. PMID 17439305 DOI: 10.1371/Journal.Pbio.0050129  1
2007 Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. Role of RNA polymerase IV in plant small RNA metabolism. Proceedings of the National Academy of Sciences of the United States of America. 104: 4536-41. PMID 17360559 DOI: 10.1073/Pnas.0611456104  1
2007 Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Current Biology : Cb. 17: 379-84. PMID 17239600 DOI: 10.1016/J.Cub.2007.01.009  1
2006 Zhang X, Jacobsen SE. Genetic analyses of DNA methyltransferases in Arabidopsis thaliana. Cold Spring Harbor Symposia On Quantitative Biology. 71: 439-47. PMID 17381326 DOI: 10.1101/sqb.2006.71.047  1
2006 Chan SW, Zhang X, Bernatavichute YV, Jacobsen SE. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. Plos Biology. 4: e363. PMID 17105345 DOI: 10.1371/Journal.Pbio.0040363  1
2006 Peng P, Chan SW, Shah GA, Jacobsen SE. Plant genetics: increased outcrossing in hothead mutants. Nature. 443: E8; discussion E8-9. PMID 17006468 DOI: 10.1038/nature05251  1
2006 Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Research. 16: 1276-88. PMID 16954541 DOI: 10.1101/Gr.5530106  1
2006 Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003  1
2006 Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 126: 93-106. PMID 16839879 DOI: 10.1016/J.Cell.2006.05.032  1
2006 Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 126: 79-92. PMID 16839878 DOI: 10.1016/J.Cell.2006.05.031  1
2006 Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. Plos Genetics. 2: e83. PMID 16741558 DOI: 10.1371/Journal.Pgen.0020083  1
2006 Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nature Genetics. 38: 721-5. PMID 16699516 DOI: 10.1038/Ng1804  1
2006 Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nature Genetics. 38: 706-10. PMID 16682972 DOI: 10.1038/Ng1795  1
2006 Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proceedings of the National Academy of Sciences of the United States of America. 103: 5012-7. PMID 16549797 DOI: 10.1073/Pnas.0507427103  1
2006 Chin HG, Patnaik D, Estève PO, Jacobsen SE, Pradhan S. Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry. 45: 3272-84. PMID 16519522 DOI: 10.1021/Bi051997R  1
2006 Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science (New York, N.Y.). 311: 395-8. PMID 16424344 DOI: 10.1126/Science.1120976  1
2005 Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6: R90. PMID 16277745 DOI: 10.1186/Gb-2005-6-11-R90  1
2005 Chan SW, Henderson IR, Jacobsen SE. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Reviews. Genetics. 6: 351-60. PMID 15861207 DOI: 10.1038/Nrg1601  1
2005 Zemach A, Li Y, Wayburn B, Ben-Meir H, Kiss V, Avivi Y, Kalchenko V, Jacobsen SE, Grafi G. DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. The Plant Cell. 17: 1549-58. PMID 15805479 DOI: 10.1105/Tpc.105.031567  0.44
2005 Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology : Cb. 15: 154-9. PMID 15668172 DOI: 10.1016/J.Cub.2005.01.008  1
2005 Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 85: 1-15. PMID 15607417 DOI: 10.1016/J.Ygeno.2004.10.005  1
2005 Chan SW-, Henderson IR, Jacobsen SE. Erratum: Gardening The Genome: DNA Methylation in Arabidopsis thaliana Nature Reviews Genetics. 6: 590-590. DOI: 10.1038/Nrg1664  1
2004 Johnson L, Mollah S, Garcia BA, Muratore TL, Shabanowitz J, Hunt DF, Jacobsen SE. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Research. 32: 6511-8. PMID 15598823 DOI: 10.1093/Nar/Gkh992  1
2004 Patnaik D, Chin HG, Estève PO, Benner J, Jacobsen SE, Pradhan S. Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. The Journal of Biological Chemistry. 279: 53248-58. PMID 15485804 DOI: 10.1074/Jbc.M409604200  1
2004 Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. The Embo Journal. 23: 4286-96. PMID 15457214 DOI: 10.1038/Sj.Emboj.7600430  1
2004 Morris KV, Chan SW, Jacobsen SE, Looney DJ. Small interfering RNA-induced transcriptional gene silencing in human cells. Science (New York, N.Y.). 305: 1289-92. PMID 15297624 DOI: 10.1126/Science.1101372  1
2004 Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology : Cb. 14: 1214-20. PMID 15242620 DOI: 10.1016/J.Cub.2004.06.055  1
2004 Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. Genetic and functional diversification of small RNA pathways in plants. Plos Biology. 2: E104. PMID 15024409 DOI: 10.1371/Journal.Pbio.0020104  1
2004 Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 112: 308-15. PMID 15014946 DOI: 10.1007/S00412-004-0275-7  1
2004 Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE. RNA silencing genes control de novo DNA methylation. Science (New York, N.Y.). 303: 1336. PMID 14988555 DOI: 10.1126/Science.1095989  1
2004 Kinoshita T, Miura A, Choi Y, Kinoshita Y, Cao X, Jacobsen SE, Fischer RL, Kakutani T. One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (New York, N.Y.). 303: 521-3. PMID 14631047 DOI: 10.1126/Science.1089835  1
2003 Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Current Biology : Cb. 13: 2212-7. PMID 14680640 DOI: 10.1016/J.Cub.2003.11.052  1
2003 Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Current Biology : Cb. 13: 421-6. PMID 12620192 DOI: 10.1016/S0960-9822(03)00106-4  1
2003 Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (New York, N.Y.). 299: 716-9. PMID 12522258 DOI: 10.1126/Science.1079695  1
2002 Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. The Embo Journal. 21: 6549-59. PMID 12456661 DOI: 10.1093/Emboj/Cdf657  1
2002 Schauer SE, Jacobsen SE, Meinke DW, Ray A. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends in Plant Science. 7: 487-91. PMID 12417148 DOI: 10.1016/S1360-1385(02)02355-5  0.04
2002 Johnson LM, Cao X, Jacobsen SE. Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation Current Biology. 12: 1360-1367. PMID 12194816 DOI: 10.1016/S0960-9822(02)00976-4  1
2002 Cao X, Jacobsen SE. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proceedings of the National Academy of Sciences of the United States of America. 99: 16491-8. PMID 12151602 DOI: 10.1073/Pnas.162371599  1
2002 Choi Y, Gehring M, Johnson L, Hannon M, Harada JJ, Goldberg RB, Jacobsen SE, Fischer RL. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 110: 33-42. PMID 12150995 DOI: 10.1016/S0092-8674(02)00807-3  1
2002 Cao X, Jacobsen SE. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Current Biology : Cb. 12: 1138-44. PMID 12121623 DOI: 10.1016/S0960-9822(02)00925-9  1
2002 Jackson JP, Lindroth AM, Cao X, Jacobsen SE. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 416: 556-60. PMID 11898023 DOI: 10.1038/Nature731  1
2001 Eckardt NA, Araki T, Benning C, Cubas P, Goodrich J, Jacobsen SE, Masson P, Nambara E, Simon R, Somerville S, Wasteneys G. Arabidopsis research 2001 Plant Cell. 13: 1973-1982. PMID 11549757 DOI: 10.2307/3871421  1
2001 Malone CS, Miner MD, Doerr JR, Jackson JP, Jacobsen SE, Wall R, Teitell M. CmC(A/T)GG DNA methylation in mature B cell lymphoma gene silencing. Proceedings of the National Academy of Sciences of the United States of America. 98: 10404-9. PMID 11504918 DOI: 10.1073/Pnas.181206898  1
2001 Kishimoto N, Sakai H, Jackson J, Jacobsen SE, Meyerowitz EM, Dennis ES, Finnegan EJ. Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Molecular Biology. 46: 171-83. PMID 11442057 DOI: 10.1023/A:1010636222327  1
2001 Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation Science. 292: 2077-2080. PMID 11349138 DOI: 10.1126/Science.1059745  1
2000 Soppe WJJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, Koornneef M, Peeters AJM. The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene Molecular Cell. 6: 791-802. PMID 11090618 DOI: 10.1016/S1097-2765(05)00090-0  1
2000 Sakai H, Krizek BA, Jacobsen SE, Meyerowitz EM. Regulation of SUP expression identifies multiple regulators involved in arabidopsis floral meristem development. The Plant Cell. 12: 1607-18. PMID 11006335 DOI: 10.1105/Tpc.12.9.1607  1
2000 Cao X, Springer NM, Muszynski MG, Phillips RL, Kaeppler S, Jacobsen SE. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 97: 4979-84. PMID 10781108 DOI: 10.1073/Pnas.97.9.4979  1
2000 Jacobsen SE, Sakai H, Finnegan EJ, Cao X, Meyerowitz EM. Ectopic hypermethylation of flower-specific genes in Arabidopsis. Current Biology : Cb. 10: 179-86. PMID 10704409 DOI: 10.1016/S0960-9822(00)00324-9  1
1999 Jacobsen SE, Running MP, Meyerowitz EM. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development (Cambridge, England). 126: 5231-43. PMID 10556049  1
1999 Jacobsen SE. Gene silencing: Maintaining methylation patterns Current Biology : Cb. 9. PMID 10469582 DOI: 10.1016/S0960-9822(99)80388-1  1
1998 Jacobsen SE, Olszewski NE, Meyerowitz EM. SPINDLY's role in the gibberellin response pathway. Symposia of the Society For Experimental Biology. 51: 73-8. PMID 10645426  1
1997 Jacobsen SE, Meyerowitz EM. Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis Science. 277: 1100-1103. PMID 9262479 DOI: 10.1126/Science.277.5329.1100  1
1996 Léon-Kloosterziel KM, Gil MA, Ruijs GJ, Jacobsen SE, Olszewski NE, Schwartz SH, Zeevaart JAD, Koornneef M. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci Plant Journal. 10: 655-661. PMID 8893542 DOI: 10.1046/J.1365-313X.1996.10040655.X  1
1996 Jacobsen SE, Binkowski KA, Olszewski NE. SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 93: 9292-9296. PMID 8799194 DOI: 10.1073/Pnas.93.17.9292  1
1996 Clark SE, Jacobsen SE, Levin JZ, Meyerowitz EM. The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis. Development (Cambridge, England). 122: 1567-75. PMID 8625843  1
1996 Jacobsen SE, Olszewski NE. Gibberellins regulate the abundance of RNAs with sequence similarity to proteinase inhibitors, dioxygenases and dehydrogenases Planta. 198: 78-86. PMID 8580773 DOI: 10.1007/Bf00197589  1
1994 Jacobsen SE, Shi L, Xin Z, Olszewski NE. Gibberellin-induced changes in the translatable mRNA populations of stamens and shoots of gibberellin-deficient tomato Planta. 192: 372-378. PMID 7764403 DOI: 10.1007/Bf00198573  1
1993 Jacobsen SE, Olszewski NE. Mutations at the SPINDLY locus of Arabidopsis alter gibberellin signal transduction Plant Cell. 5: 887-896. PMID 8400871 DOI: 10.1105/Tpc.5.8.887  1
1991 Jacobsen SE, Olszewski NE. Characterization of the Arrest in Anther Development Associated with Gibberellin Deficiency of the gib-1 Mutant of Tomato. Plant Physiology. 97: 409-14. PMID 16668400 DOI: 10.1104/Pp.97.1.409  1
1991 Jacobsen SE, Olszewski NE. Characterization of the arrest in anther development associated with gibberellin deficiency of the gib-1 mutant of tomato Plant Physiology. 97: 409-414.  1
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