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Detlef Weigel - Publications

Affiliations: 
Max-Planck-Institut für Entwicklungsbiologie, Tübingen, Baden-Württemberg, Germany 
Website:
http://www.weigelworld.org/
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378 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Barragan AC, Collenberg M, Schwab R, Kersten S, Kerstens MHL, Požárová D, Bezrukov I, Bemm F, Kolár F, Weigel D. Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3 (Bethesda, Md.). PMID 38124484 DOI: 10.1093/g3journal/jkad290  0.333
2023 Chen J, Li L, Kim JH, Neuhäuser B, Wang M, Thelen M, Hilleary R, Chi Y, Wei L, Venkataramani K, Exposito-Alonso M, Liu C, Keck J, Barragan AC, Schwab R, ... ... Weigel D, et al. Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana. Molecular Cell. PMID 37995686 DOI: 10.1016/j.molcel.2023.10.030  0.784
2023 Wang MY, Chen JB, Wu R, Guo HL, Chen Y, Li ZJ, Wei LY, Liu C, He SF, Du MD, Guo YL, Peng YL, Jones JDG, Weigel D, Huang JH, et al. The plant immune receptor SNC1 monitors helper NLRs targeted by a bacterial effector. Cell Host & Microbe. 31: 1792-1803.e7. PMID 37944492 DOI: 10.1016/j.chom.2023.10.006  0.662
2023 Monroe JG, Murray KD, Xian W, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, ... ... Weigel D, et al. Reply to: Re-evaluating evidence for adaptive mutation rate variation. Nature. 619: E57-E60. PMID 37495874 DOI: 10.1038/s41586-023-06315-x  0.772
2023 Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, ... Weigel D, et al. Author Correction: Mutation bias reflects natural selection in Arabidopsis thaliana. Nature. PMID 37495701 DOI: 10.1038/s41586-023-06387-9  0.78
2023 Hirt H, Al-Babili S, Almeida-Trapp M, Antoine M, Aranda M, Bartels D, Bennett M, Blilou I, Boer D, Boulouis A, Bowler C, Brunel-Muguet S, Chardon F, Colcombet J, Colot V, ... ... Weigel D, et al. PlantACT! - how to tackle the climate crisis. Trends in Plant Science. PMID 36740490 DOI: 10.1016/j.tplants.2023.01.005  0.749
2023 Arce AL, Mencia R, Cambiagno DA, Lang PL, Liu C, Burbano HA, Weigel D, Manavella PA. Polymorphic inverted repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana. Cell Reports. 42: 112029. PMID 36689329 DOI: 10.1016/j.celrep.2023.112029  0.825
2022 Srikant T, Yuan W, Berendzen KW, Contreras-Garrido A, Drost HG, Schwab R, Weigel D. Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation. Genome Biology. 23: 263. PMID 36539836 DOI: 10.1186/s13059-022-02833-5  0.816
2022 Kreiner JM, Latorre SM, Burbano HA, Stinchcombe JR, Otto SP, Weigel D, Wright SI. Rapid weed adaptation and range expansion in response to agriculture over the past two centuries. Science (New York, N.Y.). 378: 1079-1085. PMID 36480621 DOI: 10.1126/science.abo7293  0.792
2022 Wibowo AT, Antunez-Sanchez J, Dawson A, Price J, Meehan C, Wrightsman T, Collenberg M, Bezrukov I, Becker C, Benhamed M, Weigel D, Gutierrez-Marcos J. Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. Plos Genetics. 18: e1010479. PMID 36383565 DOI: 10.1371/journal.pgen.1010479  0.705
2022 van der Zee MJ, Whiting JR, Paris JR, Bassar RD, Travis J, Weigel D, Reznick DN, Fraser BA. Rapid genomic convergent evolution in experimental populations of Trinidadian guppies (). Evolution Letters. 6: 149-161. PMID 35386829 DOI: 10.1002/evl3.272  0.749
2022 Monroe JG, Srikant T, Carbonell-Bejerano P, Becker C, Lensink M, Exposito-Alonso M, Klein M, Hildebrandt J, Neumann M, Kliebenstein D, Weng ML, Imbert E, Ågren J, Rutter MT, Fenster CB, ... Weigel D, et al. Mutation bias reflects natural selection in Arabidopsis thaliana. Nature. PMID 35022609 DOI: 10.1038/s41586-021-04269-6  0.799
2022 Nunn A, Rodríguez-Arévalo I, Tandukar Z, Frels K, Contreras-Garrido A, Carbonell-Bejerano P, Zhang P, Ramos-Cruz D, Jandrasits K, Lanz C, Brusa A, Mirouze M, Dorn K, Galbraith D, Jarvis BA, ... ... Weigel D, et al. Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates. Plant Biotechnology Journal. PMID 34990041 DOI: 10.1111/pbi.13775  0.707
2021 Shalev O, Ashkenazy H, Neumann M, Weigel D. Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms. The Isme Journal. PMID 34897280 DOI: 10.1038/s41396-021-01168-6  0.301
2021 Shirsekar G, Devos J, Latorre SM, Blaha A, Queiroz Dias M, González Hernando A, Lundberg DS, Burbano HA, Fenster CB, Weigel D. Multiple Sources of Introduction of North American Arabidopsis thaliana From Across Eurasia. Molecular Biology and Evolution. PMID 34499163 DOI: 10.1093/molbev/msab268  0.812
2021 Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA. Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. Plos Genetics. 17: e1009566. PMID 34029313 DOI: 10.1371/journal.pgen.1009566  0.759
2020 Cambiagno DA, Giudicatti AJ, Arce AL, Gagliardi D, Li L, Yuan W, Lundberg DS, Weigel D, Manavella PA. HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing. Molecular Plant. PMID 33385584 DOI: 10.1016/j.molp.2020.12.019  0.65
2020 Fraser BA, Whiting JR, Paris JR, Weadick CJ, Parsons PJ, Charlesworth D, Bergero R, Bemm F, Hoffmann M, Kottler VA, Liu C, Dreyer C, Weigel D. Improved reference genome uncovers novel sex-linked regions in the guppy (Poecilia reticulata). Genome Biology and Evolution. PMID 32853348 DOI: 10.1093/Gbe/Evaa187  0.8
2020 Montgomery JS, Giacomini D, Waithaka B, Lanz C, Murphy BP, Campe R, Lerchl J, Landes A, Gatzmann F, Janssen A, Antonise R, Patterson E, Weigel D, Tranel PJ. Draft genomes of Amaranthus tuberculatus, Amaranthus hybridus and Amaranthus palmeri. Genome Biology and Evolution. PMID 32835372 DOI: 10.1093/Gbe/Evaa177  0.366
2020 Karasov TL, Shirsekar G, Schwab R, Weigel D. What natural variation can teach us about resistance durability. Current Opinion in Plant Biology. 56: 89-98. PMID 32535454 DOI: 10.1016/J.Pbi.2020.04.010  0.328
2020 Regalado J, Lundberg DS, Deusch O, Kersten S, Karasov T, Poersch K, Shirsekar G, Weigel D. Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. The Isme Journal. PMID 32405027 DOI: 10.1038/S41396-020-0665-8  0.404
2020 Voichek Y, Weigel D. Identifying genetic variants underlying phenotypic variation in plants without complete genomes. Nature Genetics. PMID 32284578 DOI: 10.1038/S41588-020-0612-7  0.415
2020 Li L, Habring A, Wang K, Weigel D. Atypical Resistance Protein RPW8/HR Triggers Oligomerization of the NLR Immune Receptor RPP7 and Autoimmunity. Cell Host & Microbe. PMID 32101702 DOI: 10.1016/J.Chom.2020.01.012  0.312
2019 Exposito-Alonso M, Drost HG, Burbano HA, Weigel D. The Earth BioGenome project: Opportunities and Challenges for Plant Genomics and Conservation. The Plant Journal : For Cell and Molecular Biology. PMID 31788877 DOI: 10.1111/Tpj.14631  0.807
2019 Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925  0.819
2019 Exposito-Alonso M, Burbano HA, Bossdorf O, Nielsen R, Weigel D. Publisher Correction: Natural selection on the Arabidopsis thaliana genome in present and future climates. Nature. PMID 31570884 DOI: 10.1038/S41586-019-1626-0  0.789
2019 Kreiner JM, Giacomini DA, Bemm F, Waithaka B, Regalado J, Lanz C, Hildebrandt J, Sikkema PH, Tranel PJ, Weigel D, Stinchcombe JR, Wright SI. Multiple modes of convergent adaptation in the spread of glyphosate-resistant . Proceedings of the National Academy of Sciences of the United States of America. PMID 31570613 DOI: 10.1073/Pnas.1900870116  0.336
2019 Rowan BA, Heavens D, Feuerborn TR, Tock AJ, Henderson IR, Weigel D. An Ultra High-Density Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features. Genetics. PMID 31527048 DOI: 10.1534/Genetics.119.302406  0.335
2019 Exposito-Alonso M, Burbano HA, Bossdorf O, Nielsen R, Weigel D. Natural selection on the Arabidopsis thaliana genome in present and future climates. Nature. PMID 31462776 DOI: 10.1038/S41586-019-1520-9  0.799
2019 Lange H, Ndecky SYA, Gomez-Diaz C, Pflieger D, Butel N, Zumsteg J, Kuhn L, Piermaria C, Chicher J, Christie M, Karaaslan ES, Lang PLM, Weigel D, Vaucheret H, Hammann P, et al. RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nature Communications. 10: 3871. PMID 31455787 DOI: 10.1038/S41467-019-11807-4  0.308
2019 Van de Weyer AL, Monteiro F, Furzer OJ, Nishimura MT, Cevik V, Witek K, Jones JDG, Dangl JL, Weigel D, Bemm F. A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. Cell. 178: 1260-1272.e14. PMID 31442410 DOI: 10.1016/J.Cell.2019.07.038  0.416
2019 Barragan CA, Wu R, Kim ST, Xi W, Habring A, Hagmann J, Van de Weyer AL, Zaidem M, Ho WWH, Wang G, Bezrukov I, Weigel D, Chae E. RPW8/HR repeats control NLR activation in Arabidopsis thaliana. Plos Genetics. 15: e1008313. PMID 31344025 DOI: 10.1371/Journal.Pgen.1008313  0.582
2019 Yoo CY, Pasoreck EK, Wang H, Cao J, Blaha GM, Weigel D, Chen M. Phytochrome activates the plastid-encoded RNA polymerase for chloroplast biogenesis via nucleus-to-plastid signaling. Nature Communications. 10: 2629. PMID 31201355 DOI: 10.1038/S41467-019-10518-0  0.359
2019 Yang EJ, Yoo CY, Liu J, Wang H, Cao J, Li FW, Pryer KM, Sun TP, Weigel D, Zhou P, Chen M. NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches. Nature Communications. 10: 2630. PMID 31201314 DOI: 10.1038/S41467-019-10517-1  0.389
2019 Weigel D. All in the Family: The First Whole-genome Survey of NLR Genes. The Plant Cell. PMID 31036591 DOI: 10.1105/Tpc.19.00309  0.337
2019 Vasseur F, Fouqueau L, de Vienne D, Nidelet T, Violle C, Weigel D. Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana. Plos Biology. 17: e3000214. PMID 31017902 DOI: 10.1371/Journal.Pbio.3000214  0.373
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Nueffer B, Wright SI, Weigel D. Long-term balancing selection drives evolution of immunity genes in . Elife. 8. PMID 30806624 DOI: 10.7554/Elife.43606  0.733
2019 Weigel D, Clark SE. Sizing Up the Floral Meristem. Plant Physiology. 112: 5-10. PMID 12226369 DOI: 10.1104/Pp.112.1.5  0.595
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Neuffer B, Wright SI, Weigel D. Author response: Long-term balancing selection drives evolution of immunity genes in Capsella Elife. DOI: 10.7554/Elife.43606.048  0.681
2018 Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J. Correction: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. Elife. 7. PMID 30574869 DOI: 10.7554/eLife.44302  0.645
2018 Weng ML, Becker C, Hildebrandt J, Rutter MT, Shaw RG, Weigel D, Fenster CB. Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in . Genetics. PMID 30514707 DOI: 10.1534/Genetics.118.301721  0.688
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Weigel D, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  0.682
2018 Tedeschi F, Rizzo P, Huong BTM, Czihal A, Rutten T, Altschmied L, Scharfenberg S, Grosse I, Becker C, Weigel D, Bäumlein H, Kuhlmann M. EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. The New Phytologist. PMID 30252137 DOI: 10.1111/Nph.15439  0.685
2018 Zhu W, Zaidem M, Van de Weyer AL, Gutaker RM, Chae E, Kim ST, Bemm F, Li L, Todesco M, Schwab R, Unger F, Beha MJ, Demar M, Weigel D. Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene. Plos Genetics. 14: e1007628. PMID 30235212 DOI: 10.1371/Journal.Pgen.1007628  0.413
2018 Wibowo A, Becker C, Durr J, Price J, Spaepen S, Hilton S, Putra H, Papareddy R, Saintain Q, Harvey S, Bending GD, Schulze-Lefert P, Weigel D, Gutierrez-Marcos J. Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201727 DOI: 10.1073/Pnas.1805371115  0.716
2018 Wu R, Lucke M, Jang YT, Zhu W, Symeonidi E, Wang C, Fitz J, Xi W, Schwab R, Weigel D. An efficient CRISPR vector toolbox for engineering large deletions in . Plant Methods. 14: 65. PMID 30083222 DOI: 10.1186/S13007-018-0330-7  0.369
2018 Vasseur F, Bresson J, Wang G, Schwab R, Weigel D. Image-based methods for phenotyping growth dynamics and fitness components in . Plant Methods. 14: 63. PMID 30065776 DOI: 10.1186/S13007-018-0331-6  0.325
2018 Karasov TL, Almario J, Friedemann C, Ding W, Giolai M, Heavens D, Kersten S, Lundberg DS, Neumann M, Regalado J, Neher RA, Kemen E, Weigel D. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host & Microbe. 24: 168-179.e4. PMID 30001519 DOI: 10.1016/J.Chom.2018.06.011  0.405
2018 Seymour DK, Chae E, Arioz BI, Koenig D, Weigel D. Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses. Heredity. PMID 29955170 DOI: 10.1038/S41437-018-0107-9  0.717
2018 Vasseur F, Exposito-Alonso M, Ayala-Garay OJ, Wang G, Enquist BJ, Vile D, Violle C, Weigel D. Adaptive diversification of growth allometry in the plant. Proceedings of the National Academy of Sciences of the United States of America. PMID 29540570 DOI: 10.1073/Pnas.1709141115  0.807
2018 Tabas-Madrid D, Méndez-Vigo B, Arteaga N, Marcer A, Pascual-Montano A, Weigel D, Xavier Picó F, Alonso-Blanco C. Genome-wide signatures of flowering adaptation to climate temperature: regional analyses in a highly diverse native range of Arabidopsis thaliana. Plant, Cell & Environment. PMID 29520809 DOI: 10.1111/Pce.13189  0.422
2018 Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, ... Weigel D, et al. The rate and potential relevance of new mutations in a colonizing plant lineage. Plos Genetics. 14: e1007155. PMID 29432421 DOI: 10.1371/Journal.Pgen.1007155  0.804
2018 Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541. PMID 29416032 DOI: 10.1038/S41467-018-03016-2  0.359
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Weigel D, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  0.719
2017 Alexandre CM, Urton JR, Jean-Baptiste K, Huddleston JL, Dorrity MW, Cuperus JT, Sullivan AM, Bemm F, Jolic D, Arsovski AA, Thompson A, Nemhauser JL, Fields S, Weigel D, Bubb KL, et al. Complex relationships between chromatin accessibility, sequence divergence, and gene expression in A. thaliana. Molecular Biology and Evolution. PMID 29272536 DOI: 10.1093/Molbev/Msx326  0.405
2017 Exposito-Alonso M, Vasseur F, Ding W, Wang G, Burbano HA, Weigel D. Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana. Nature Ecology & Evolution. PMID 29255303 DOI: 10.1038/S41559-017-0423-0  0.799
2017 Lang PLM, Christie MD, Dogan ES, Schwab R, Hagmann J, Van de Weyer AL, Scacchi E, Weigel D. A role for the F-box protein HAWAIIAN SKIRT in plant microRNA function. Plant Physiology. PMID 29114080 DOI: 10.1104/Pp.17.01313  0.804
2017 Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954  0.802
2017 Salvador-Guirao R, Baldrich P, Weigel D, Rubio-Somoza I, San Segundo B. The microRNA miR773 is involved in the Arabidopsis immune response to fungal pathogens. Molecular Plant-Microbe Interactions : Mpmi. PMID 28990488 DOI: 10.1094/Mpmi-05-17-0108-R  0.33
2017 Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE. Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. The New Phytologist. PMID 28906562 DOI: 10.1111/Nph.14781  0.716
2017 Liu C, Cheng YJ, Wang JW, Weigel D. Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis. Nature Plants. PMID 28848243 DOI: 10.1038/S41477-017-0005-9  0.542
2017 Zhu W, Hu B, Becker C, Doğan ES, Berendzen KW, Weigel D, Liu C. Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biology. 18: 157. PMID 28830561 DOI: 10.1186/S13059-017-1281-4  0.722
2017 Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, ... ... Weigel D, et al. Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science (New York, N.Y.). 357: 512-515. PMID 28774930 DOI: 10.1126/Science.Aam9425  0.807
2017 Xin R, Zhu L, Salomé PA, Mancini E, Marshall CM, Harmon FG, Yanovsky MJ, Weigel D, Huq E. SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28760995 DOI: 10.1073/Pnas.1706379114  0.335
2017 Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, ... ... Weigel D, et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics. PMID 28581499 DOI: 10.1038/Ng.3886  0.707
2017 Ikeda Y, Pélissier T, Bourguet P, Becker C, Pouch-Pélissier MN, Pogorelcnik R, Weingartner M, Weigel D, Deragon JM, Mathieu O. Arabidopsis proteins with a transposon-related domain act in gene silencing. Nature Communications. 8: 15122. PMID 28466841 DOI: 10.1038/Ncomms15122  0.719
2017 Tran DTN, Chung EH, Habring-Müller A, Demar M, Schwab R, Dangl JL, Weigel D, Chae E. Activation of a Plant NLR Complex through Heteromeric Association with an Autoimmune Risk Variant of Another NLR. Current Biology : Cb. PMID 28416116 DOI: 10.1016/J.Cub.2017.03.018  0.313
2017 Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RA. Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 28378460 DOI: 10.1111/Tpj.13560  0.737
2017 Nekrasov V, Wang C, Win J, Lanz C, Weigel D, Kamoun S. Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion. Scientific Reports. 7: 482. PMID 28352080 DOI: 10.1038/S41598-017-00578-X  0.388
2017 Soto-Suárez M, Baldrich P, Weigel D, Rubio-Somoza I, San Segundo B. The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens. Scientific Reports. 7: 44898. PMID 28332603 DOI: 10.1038/Srep44898  0.319
2017 Kasulin L, Rowan B, León RJ, Schuenemann VJ, Weigel D, Botto JF. A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina. Molecular Ecology. PMID 28316114 DOI: 10.1111/Mec.14107  0.453
2017 Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nature Communications. 8: 14458. PMID 28181519 DOI: 10.1038/Ncomms14458  0.802
2017 Catoni M, Griffiths J, Becker C, Zabet NR, Bayon C, Dapp M, Lieberman-Lazarovich M, Weigel D, Paszkowski J. DNA sequence properties that predict susceptibility to epiallelic switching. The Embo Journal. PMID 28069706 DOI: 10.15252/Embj.201695602  0.692
2017 Rowan BA, Seymour DK, Chae E, Lundberg DS, Weigel D. Methods for Genotyping-by-Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1492: 221-242. PMID 27822868 DOI: 10.1007/978-1-4939-6442-0_16  0.392
2016 Künstner A, Hoffmann M, Fraser BA, Kottler VA, Sharma E, Weigel D, Dreyer C. The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population. Plos One. 11: e0169087. PMID 28033408 DOI: 10.1371/Journal.Pone.0169087  0.809
2016 Vanhaeren H, Nam YJ, De Milde L, Chae E, Storme V, Weigel D, Gonzalez N, Inzé D. Forever Young: The Role of Ubiquitin Receptor DA1 and E3 Ligase BIG BROTHER in Controlling Leaf Growth and Development. Plant Physiology. PMID 28003326 DOI: 10.1104/Pp.16.01410  0.386
2016 Grimm DG, Roqueiro D, Salome P, Kleeberger S, Greshake B, Zhu W, Liu C, Lippert C, Stegle O, Schölkopf B, Weigel D, Borgwardt K. easyGWAS: A Cloud-based Platform for Comparing the Results of Genome-wide Association Studies. The Plant Cell. PMID 27986896 DOI: 10.1105/Tpc.16.00551  0.8
2016 Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M. What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity. PMID 27925617 DOI: 10.1038/Hdy.2016.122  0.331
2016 Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986  0.809
2016 Nam YJ, Herman D, Blomme J, Chae E, Kojima M, Coppens F, Storme V, Van Daele T, Dhondt S, Sakakibara H, Weigel D, Inzé D, Gonzalez N. Natural Variation of Molecular and Morphological Gibberellin Responses. Plant Physiology. PMID 27879393 DOI: 10.1104/Pp.16.01626  0.377
2016 Dueck A, Evers M, Henz SR, Unger K, Eichner N, Merkl R, Berezikov E, Engelmann JC, Weigel D, Wenzl S, Meister G. Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. Bmc Genomics. 17: 853. PMID 27806710 DOI: 10.1186/S12864-016-3202-4  0.326
2016 Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M. What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity. PMID 27804968 DOI: 10.1038/Hdy.2016.99  0.34
2016 Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27803326 DOI: 10.1073/Pnas.1615268113  0.806
2016 Świadek M, Proost S, Sieh D, Yu J, Todesco M, Jorzig C, Rodriguez Cubillos AE, Plötner B, Nikoloski Z, Chae E, Giavalisco P, Fischer A, Schröder F, Kim ST, Weigel D, et al. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. The New Phytologist. PMID 27588563 DOI: 10.1111/Nph.14155  0.744
2016 Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, ... ... Weigel D, et al. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics. PMID 27428747 DOI: 10.1038/Ng.3617  0.36
2016 Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, ... ... Weigel D, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044  0.742
2016 Iakovidis M, Teixeira PJ, Exposito-Alonso M, Cowper MG, Law TF, Liu Q, Vu MC, Dang TM, Corwin JA, Weigel D, Dangl JL, Grant SR. Effector Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait. Genetics. PMID 27412712 DOI: 10.1534/Genetics.116.190678  0.813
2016 Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J. Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. Elife. 5. PMID 27242129 DOI: 10.7554/Elife.13546  0.691
2016 Liu C, Wang C, Wang G, Becker C, Zaidem M, Weigel D. Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. Genome Research. PMID 27225844 DOI: 10.1101/Gr.204032.116  0.726
2016 Venturelli S, Petersen S, Langenecker T, Weigel D, Lauer UM, Becker C. Allelochemicals of the phenoxazinone class act at physiologically relevant concentrations. Plant Signaling & Behavior. 11: e1176818. PMID 27088968 DOI: 10.1080/15592324.2016.1176818  0.68
2016 Rigal M, Becker C, Pélissier T, Pogorelcnik R, Devos J, Ikeda Y, Weigel D, Mathieu O. Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27001853 DOI: 10.1073/Pnas.1600672113  0.689
2016 Chae E, Tran DT, Weigel D. Cooperation and Conflict in the Plant Immune System. Plos Pathogens. 12: e1005452. PMID 26986469 DOI: 10.1371/Journal.Ppat.1005452  0.347
2016 Huang S, Weigel D, Beachy RN, Li J. A proposed regulatory framework for genome-edited crops. Nature Genetics. 48: 109-11. PMID 26813761 DOI: 10.1038/Ng.3484  0.402
2016 Agler MT, Ruhe J, Kroll S, Morhenn C, Kim ST, Weigel D, Kemen EM. Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. Plos Biology. 14: e1002352. PMID 26788878 DOI: 10.1371/Journal.Pbio.1002352  0.306
2015 Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, ... ... Weigel D, et al. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants. 1: 14023. PMID 27246759 DOI: 10.1038/Nplants.2014.23  0.708
2015 Venturelli S, Belz RG, Kämper A, Berger A, von Horn K, Wegner A, Böcker A, Zabulon G, Langenecker T, Kohlbacher O, Barneche F, Weigel D, Lauer UM, Bitzer M, Becker C. Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors. The Plant Cell. PMID 26530086 DOI: 10.1105/Tpc.15.00585  0.702
2015 Woodson JD, Joens MS, Sinson AB, Gilkerson J, Salomé PA, Weigel D, Fitzpatrick JA, Chory J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. Science (New York, N.Y.). 350: 450-4. PMID 26494759 DOI: 10.1126/Science.Aac7444  0.518
2015 Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C. Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. Plos Genetics. 11: e1005588. PMID 26492483 DOI: 10.1371/Journal.Pgen.1005588  0.348
2015 Weigel D, Nordborg M. Population Genomics for Understanding Adaptation in Wild Plant Species. Annual Review of Genetics. PMID 26436459 DOI: 10.1146/Annurev-Genet-120213-092110  0.437
2015 Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K. Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. Plos One. 10: e0137391. PMID 26382944 DOI: 10.1371/Journal.Pone.0137391  0.733
2015 Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. Plos Genetics. 11: e1005452. PMID 26379054 DOI: 10.1371/journal.pgen.1005452  0.671
2015 Liu C, Weigel D. Chromatin in 3D: progress and prospects for plants. Genome Biology. 16: 170. PMID 26294115 DOI: 10.1186/S13059-015-0738-6  0.392
2015 Kottler VA, Künstner A, Koch I, Flötenmeyer M, Langenecker T, Hoffmann M, Sharma E, Weigel D, Dreyer C. Adenylate cyclase 5 is required for melanophore and male pattern development in the guppy (Poecilia reticulata). Pigment Cell & Melanoma Research. 28: 545-58. PMID 26079969 DOI: 10.1111/Pcmr.12386  0.801
2015 Busoms S, Teres J, Huang XY, Bomblies K, Danku J, Douglas A, Weigel D, Poschenrieder C, Salt DE. Salinity Is an Agent of Divergent Selection Driving Local Adaptation of Arabidopsis to Coastal Habitats. Plant Physiology. 168: 915-29. PMID 26034264 DOI: 10.1104/Pp.15.00427  0.686
2015 Lu X, Dittgen J, Piślewska-Bednarek M, Molina A, Schneider B, Svatoš A, Doubský J, Schneeberger K, Weigel D, Bednarek P, Schulze-Lefert P. Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways. Plant Physiology. 168: 814-27. PMID 26023163 DOI: 10.1104/Pp.15.00182  0.32
2015 Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, et al. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. The Plant Journal : For Cell and Molecular Biology. 83: 189-212. PMID 26017574 DOI: 10.1111/Tpj.12886  0.376
2015 Koenig D, Weigel D. Beyond the thale: comparative genomics and genetics of Arabidopsis relatives. Nature Reviews. Genetics. 16: 285-98. PMID 25854181 DOI: 10.1038/Nrg3883  0.746
2015 Brockington SF, Moyroud E, Sayou C, Monniaux M, Nanao MH, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Dumas R, Parcy F. Evolution. Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". Science (New York, N.Y.). 347: 621. PMID 25657241 DOI: 10.1126/Science.1256011  0.793
2015 Rowan BA, Patel V, Weigel D, Schneeberger K. Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping. G3 (Bethesda, Md.). 5: 385-98. PMID 25585881 DOI: 10.1534/G3.114.016501  0.381
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. Plos Genetics. 11: e1004920. PMID 25569172 DOI: 10.1371/Journal.Pgen.1004920  0.81
2015 Smith LM, Burbano HA, Wang X, Fitz J, Wang G, Ural-Blimke Y, Weigel D. Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae. The Plant Journal : For Cell and Molecular Biology. 81: 597-610. PMID 25557441 DOI: 10.1111/Tpj.12754  0.786
2015 Salomé PA, Weigel D. Plant genetic archaeology: whole-genome sequencing reveals the pedigree of a classical trisomic line. G3 (Bethesda, Md.). 5: 253-9. PMID 25524155 DOI: 10.1534/G3.114.015156  0.427
2015 Fraser BA, Künstner A, Reznick DN, Dreyer C, Weigel D. Population genomics of natural and experimental populations of guppies (Poecilia reticulata). Molecular Ecology. 24: 389-408. PMID 25444454 DOI: 10.1111/Mec.13022  0.749
2015 Wang C, Liu C, Roqueiro D, Grimm D, Schwab R, Becker C, Lanz C, Weigel D. Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Research. 25: 246-56. PMID 25367294 DOI: 10.1101/Gr.170332.113  0.82
2015 Geissler K, Eschen-Lippold L, Naumann K, Schneeberger K, Weigel D, Scheel D, Rosahl S, Westphal L. Mutations in the EDR1 Gene Alter the Response of Arabidopsis thaliana to Phytophthora infestans and the Bacterial PAMPs flg22 and elf18. Molecular Plant-Microbe Interactions : Mpmi. 28: 122-33. PMID 25353364 DOI: 10.1094/Mpmi-09-14-0282-R  0.34
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Epigenetic variation in a nearly isogenic population. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004920.G002  0.611
2014 Alcázar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, Parker JE. Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature. Plos Genetics. 10: e1004848. PMID 25503786 DOI: 10.1371/Journal.Pgen.1004848  0.392
2014 Chae E, Bomblies K, Kim ST, Karelina D, Zaidem M, Ossowski S, Martín-Pizarro C, Laitinen RA, Rowan BA, Tenenboim H, Lechner S, Demar M, Habring-Müller A, Lanz C, Rätsch G, ... Weigel D, et al. Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis. Cell. 159: 1341-51. PMID 25467443 DOI: 10.1016/J.Cell.2014.10.049  0.826
2014 Rubio-Somoza I, Zhou CM, Confraria A, Martinho C, von Born P, Baena-Gonzalez E, Wang JW, Weigel D. Temporal control of leaf complexity by miRNA-regulated licensing of protein complexes. Current Biology : Cb. 24: 2714-9. PMID 25448000 DOI: 10.1016/J.Cub.2014.09.058  0.473
2014 Seymour DK, Koenig D, Hagmann J, Becker C, Weigel D. Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. Plos Genetics. 10: e1004785. PMID 25393550 DOI: 10.1371/Journal.Pgen.1004785  0.808
2014 Heyndrickx KS, Van de Velde J, Wang C, Weigel D, Vandepoele K. A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. The Plant Cell. 26: 3894-910. PMID 25361952 DOI: 10.1105/Tpc.114.130591  0.429
2014 Köster T, Meyer K, Weinholdt C, Smith LM, Lummer M, Speth C, Grosse I, Weigel D, Staiger D. Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic Acids Research. 42: 9925-36. PMID 25104024 DOI: 10.1093/Nar/Gku716  0.536
2014 Lim EC, Müller J, Hagmann J, Henz SR, Kim ST, Weigel D. Trowel: a fast and accurate error correction module for Illumina sequencing reads. Bioinformatics (Oxford, England). 30: 3264-5. PMID 25075116 DOI: 10.1093/Bioinformatics/Btu513  0.301
2014 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, ... ... Weigel D, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046  0.806
2014 Agren JÃ…, Wang W, Koenig D, Neuffer B, Weigel D, Wright SI. Mating system shifts and transposable element evolution in the plant genus Capsella. Bmc Genomics. 15: 602. PMID 25030755 DOI: 10.1186/1471-2164-15-602  0.734
2014 Todesco M, Kim ST, Chae E, Bomblies K, Zaidem M, Smith LM, Weigel D, Laitinen RA. Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. Plos Genetics. 10: e1004459. PMID 25010663 DOI: 10.1371/Journal.Pgen.1004459  0.802
2014 Dettmer J, Ursache R, Campilho A, Miyashima S, Belevich I, O'Regan S, Mullendore DL, Yadav SR, Lanz C, Beverina L, Papagni A, Schneeberger K, Weigel D, Stierhof YD, Moritz T, et al. CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications. 5: 4276. PMID 25008948 DOI: 10.1038/Ncomms5276  0.334
2014 Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Weigel D, Pontes O, Ecker JR, Chen X. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis Plos Genetics. 10. PMID 24992598 DOI: 10.1371/Journal.Pgen.1004446  0.727
2014 Sharma E, Künstner A, Fraser BA, Zipprich G, Kottler VA, Henz SR, Weigel D, Dreyer C. Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata Bmc Genomics. 15. PMID 24886435 DOI: 10.1186/1471-2164-15-400  0.803
2014 Yoshida K, Burbano HA, Krause J, Thines M, Weigel D, Kamoun S. Mining herbaria for plant pathogen genomes: back to the future. Plos Pathogens. 10: e1004028. PMID 24763501 DOI: 10.1371/Journal.Ppat.1004028  0.807
2014 Muralidharan S, Box MS, Sedivy EL, Wigge PA, Weigel D, Rowan BA. Different mechanisms for Arabidopsis thaliana hybrid necrosis cases inferred from temperature responses. Plant Biology (Stuttgart, Germany). 16: 1033-41. PMID 24641593 DOI: 10.1111/Plb.12164  0.666
2014 Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiology. 165: 175-85. PMID 24623850 DOI: 10.1104/Pp.113.233213  0.697
2014 Ho WW, Weigel D. Structural features determining flower-promoting activity of Arabidopsis FLOWERING LOCUS T. The Plant Cell. 26: 552-64. PMID 24532592 DOI: 10.1105/Tpc.113.115220  0.608
2014 Kottler VA, Koch I, Flötenmeyer M, Hashimoto H, Weigel D, Dreyer C. Multiple pigment cell types contribute to the black, blue, and orange ornaments of male guppies (Poecilia reticulata). Plos One. 9: e85647. PMID 24465632 DOI: 10.1371/Journal.Pone.0085647  0.783
2014 Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Parcy F, Dumas R. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science (New York, N.Y.). 343: 645-8. PMID 24436181 DOI: 10.1126/Science.1248229  0.82
2013 Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, et al. The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. Elife. 2: e01426. PMID 24347547 DOI: 10.7554/Elife.01426  0.676
2013 Merelo P, Xie Y, Brand L, Ott F, Weigel D, Bowman JL, Heisler MG, Wenkel S. Genome-wide identification of KANADI1 target genes. Plos One. 8: e77341. PMID 24155946 DOI: 10.1371/Journal.Pone.0077341  0.788
2013 Nekrasov V, Staskawicz B, Weigel D, Jones JD, Kamoun S. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nature Biotechnology. 31: 691-3. PMID 23929340 DOI: 10.1038/Nbt.2655  0.303
2013 Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ. LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proceedings of the National Academy of Sciences of the United States of America. 110: 12120-5. PMID 23818596 DOI: 10.1073/Pnas.1302170110  0.365
2013 Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, ... ... Weigel D, et al. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America. 110: E2655-62. PMID 23803858 DOI: 10.1073/Pnas.1309606110  0.828
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Weigel D, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  0.818
2013 Yoshida K, Schuenemann VJ, Cano LM, Pais M, Mishra B, Sharma R, Lanz C, Martin FN, Kamoun S, Krause J, Thines M, Weigel D, Burbano HA. The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. Elife. 2: e00731. PMID 23741619 DOI: 10.7554/Elife.00731  0.786
2013 Kottler VA, Fadeev A, Weigel D, Dreyer C. Pigment pattern formation in the guppy, Poecilia reticulata, involves the Kita and Csf1ra receptor tyrosine kinases. Genetics. 194: 631-46. PMID 23666934 DOI: 10.1534/Genetics.113.151738  0.802
2013 Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/Gb-2013-14-4-113  0.335
2013 Rubio-Somoza I, Weigel D. Coordination of flower maturation by a regulatory circuit of three microRNAs. Plos Genetics. 9: e1003374. PMID 23555288 DOI: 10.1371/Journal.Pgen.1003374  0.32
2013 Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K. Accurate indel prediction using paired-end short reads. Bmc Genomics. 14: 132. PMID 23442375 DOI: 10.1186/1471-2164-14-132  0.781
2013 Wang X, Weigel D, Smith LM. Transposon variants and their effects on gene expression in Arabidopsis. Plos Genetics. 9: e1003255. PMID 23408902 DOI: 10.1371/Journal.Pgen.1003255  0.645
2013 Manavella PA, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, Weigel D. Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiology. 161: 805-12. PMID 23204429 DOI: 10.1104/Pp.112.207068  0.777
2013 Warthmann N, Ossowski S, Schwab R, Weigel D. Artificial microRNAs for specific gene silencing in rice. Methods in Molecular Biology (Clifton, N.J.). 956: 131-49. PMID 23135850 DOI: 10.1007/978-1-62703-194-3_11  0.65
2013 Rosloski SM, Singh A, Jali SS, Balasubramanian S, Weigel D, Grbic V. Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana. Plant Molecular Biology. 81: 57-69. PMID 23111501 DOI: 10.1007/S11103-012-9982-2  0.819
2013 Kopischke M, Westphal L, Schneeberger K, Clark R, Ossowski S, Wewer V, Fuchs R, Landtag J, Hause G, Dörmann P, Lipka V, Weigel D, Schulze-Lefert P, Scheel D, Rosahl S. Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal : For Cell and Molecular Biology. 73: 456-68. PMID 23072470 DOI: 10.1111/Tpj.12046  0.678
2013 Wijnker E, James GV, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, Jong DFd, Snoo CBd, Zapata L, Huettel B, Jong Hd, Ossowski S, Weigel D, Koornneef M, et al. Author response: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana Elife. DOI: 10.7554/Elife.01426.020  0.649
2013 Yoshida K, Schuenemann VJ, Cano LM, Pais M, Mishra B, Sharma R, Lanz C, Martin FN, Kamoun S, Krause J, Thines M, Weigel D, Burbano HA. Correction: The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine Elife. 2. DOI: 10.7554/Elife.01108  0.77
2013 Weigel D, Lang P. Kontrolle der Pflanzenentwicklung durch MikroRNAs Biospektrum. 19: 622-624. DOI: 10.1007/S12268-013-0363-4  0.394
2012 Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, Macek B, Weigel D. Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell. 151: 859-70. PMID 23141542 DOI: 10.1016/J.Cell.2012.09.039  0.8
2012 Weigel D, Colot V. Epialleles in plant evolution. Genome Biology. 13: 249. PMID 23058244 DOI: 10.1186/Gb-2012-13-10-249  0.399
2012 Becker C, Weigel D. Epigenetic variation: origin and transgenerational inheritance. Current Opinion in Plant Biology. 15: 562-7. PMID 22939250 DOI: 10.1016/J.Pbi.2012.08.004  0.73
2012 Guo YL, Todesco M, Hagmann J, Das S, Weigel D. Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella. Genetics. 192: 729-39. PMID 22865739 DOI: 10.1534/Genetics.112.143958  0.806
2012 Giacomelli JI, Weigel D, Chan RL, Manavella PA. Role of recently evolved miRNA regulation of sunflower HaWRKY6 in response to temperature damage. The New Phytologist. 195: 766-73. PMID 22846054 DOI: 10.1111/J.1469-8137.2012.04259.X  0.695
2012 Rutter MT, Roles A, Conner JK, Shaw RG, Shaw FH, Schneeberger K, Ossowski S, Weigel D, Fenster CB. Fitness of Arabidopsis thaliana mutation accumulation lines whose spontaneous mutations are known. Evolution; International Journal of Organic Evolution. 66: 2335-9. PMID 22759306 DOI: 10.1111/J.1558-5646.2012.01583.X  0.623
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  0.675
2012 Galvão VC, Nordström KJ, Lanz C, Sulz P, Mathieu J, Posé D, Schmid M, Weigel D, Schneeberger K. Synteny-based mapping-by-sequencing enabled by targeted enrichment. The Plant Journal : For Cell and Molecular Biology. 71: 517-26. PMID 22409706 DOI: 10.1111/J.1365-313X.2012.04993.X  0.791
2012 Manavella PA, Koenig D, Weigel D. Plant secondary siRNA production determined by microRNA-duplex structure. Proceedings of the National Academy of Sciences of the United States of America. 109: 2461-6. PMID 22308502 DOI: 10.1073/Pnas.1200169109  0.778
2012 Felippes FF, Wang JW, Weigel D. MIGS: miRNA-induced gene silencing. The Plant Journal : For Cell and Molecular Biology. 70: 541-7. PMID 22211571 DOI: 10.1111/J.1365-313X.2011.04896.X  0.478
2012 Todesco M, Balasubramanian S, Cao J, Ott F, Sureshkumar S, Schneeberger K, Meyer RC, Altmann T, Weigel D. Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Current Biology : Cb. 22: 166-70. PMID 22206705 DOI: 10.1016/J.Cub.2011.11.060  0.706
2012 Smith LM, Weigel D. On epigenetics and epistasis: hybrids and their non-additive interactions. The Embo Journal. 31: 249-50. PMID 22193717 DOI: 10.1038/Emboj.2011.473  0.638
2012 Weigel D. Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiology. 158: 2-22. PMID 22147517 DOI: 10.1104/Pp.111.189845  0.377
2012 Salomé PA, Bomblies K, Fitz J, Laitinen RA, Warthmann N, Yant L, Weigel D. The recombination landscape in Arabidopsis thaliana F2 populations. Heredity. 108: 447-55. PMID 22072068 DOI: 10.1038/Hdy.2011.95  0.809
2012 Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN. High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Research. 22: 163-76. PMID 21940835 DOI: 10.1101/Gr.123547.111  0.561
2011 Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature. 480: 245-9. PMID 22057020 DOI: 10.1038/Nature10555  0.811
2011 Davila JI, Arrieta-Montiel MP, Wamboldt Y, Cao J, Hagmann J, Shedge V, Xu YZ, Weigel D, Mackenzie SA. Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. Bmc Biology. 9: 64. PMID 21951689 DOI: 10.1186/1741-7007-9-64  0.354
2011 Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, ... ... Weigel D, et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics. 43: 956-63. PMID 21874002 DOI: 10.1038/Ng.911  0.827
2011 Klein JD, Ossowski S, Schneeberger K, Weigel D, Huson DH. LOCAS--a low coverage assembly tool for resequencing projects. Plos One. 6: e23455. PMID 21858125 DOI: 10.1371/Journal.Pone.0023455  0.61
2011 Guo YL, Fitz J, Schneeberger K, Ossowski S, Cao J, Weigel D. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiology. 157: 757-69. PMID 21810963 DOI: 10.1104/Pp.111.181990  0.811
2011 Guo YL, Zhao X, Lanz C, Weigel D. Evolution of the S-locus region in Arabidopsis relatives. Plant Physiology. 157: 937-46. PMID 21810962 DOI: 10.1104/Pp.111.174912  0.723
2011 Smith LM, Bomblies K, Weigel D. Complex evolutionary events at a tandem cluster of Arabidopsis thaliana genes resulting in a single-locus genetic incompatibility. Plos Genetics. 7: e1002164. PMID 21779175 DOI: 10.1371/Journal.Pgen.1002164  0.789
2011 Rowan BA, Weigel D, Koenig D. Developmental genetics and new sequencing technologies: the rise of nonmodel organisms. Developmental Cell. 21: 65-76. PMID 21763609 DOI: 10.1016/J.Devcel.2011.05.021  0.705
2011 Willing EM, Hoffmann M, Klein JD, Weigel D, Dreyer C. Paired-end RAD-seq for de novo assembly and marker design without available reference. Bioinformatics (Oxford, England). 27: 2187-93. PMID 21712251 DOI: 10.1093/Bioinformatics/Btr346  0.359
2011 Schneeberger K, Ossowski S, Ott F, Klein JD, Wang X, Lanz C, Smith LM, Cao J, Fitz J, Warthmann N, Henz SR, Huson DH, Weigel D. Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America. 108: 10249-54. PMID 21646520 DOI: 10.1073/Pnas.1107739108  0.721
2011 Sonmez C, Bäurle I, Magusin A, Dreos R, Laubinger S, Weigel D, Dean C. RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences of the United States of America. 108: 8508-13. PMID 21536901 DOI: 10.1073/Pnas.1105334108  0.758
2011 Moyroud E, Minguet EG, Ott F, Yant L, Posé D, Monniaux M, Blanchet S, Bastien O, Thévenon E, Weigel D, Schmid M, Parcy F. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. The Plant Cell. 23: 1293-306. PMID 21515819 DOI: 10.1105/Tpc.111.083329  0.815
2011 Manavella PA, Weigel D, Wu L. Argonaute10 as a miRNA locker. Cell. 145: 173-4. PMID 21496638 DOI: 10.1016/J.Cell.2011.03.045  0.666
2011 Gou JY, Felippes FF, Liu CJ, Weigel D, Wang JW. Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. The Plant Cell. 23: 1512-22. PMID 21487097 DOI: 10.1105/Tpc.111.084525  0.441
2011 Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, ... ... Weigel D, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 43: 476-81. PMID 21478890 DOI: 10.1038/Ng.807  0.819
2011 Rubio-Somoza I, Weigel D. MicroRNA networks and developmental plasticity in plants. Trends in Plant Science. 16: 258-64. PMID 21466971 DOI: 10.1016/J.Tplants.2011.03.001  0.312
2011 Schneeberger K, Weigel D. Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science. 16: 282-8. PMID 21439889 DOI: 10.1016/J.Tplants.2011.02.006  0.436
2011 Salomé PA, Bomblies K, Laitinen RA, Yant L, Mott R, Weigel D. Genetic architecture of flowering-time variation in Arabidopsis thaliana. Genetics. 188: 421-33. PMID 21406681 DOI: 10.1534/Genetics.111.126607  0.824
2011 Wang JW, Park MY, Wang LJ, Koo Y, Chen XY, Weigel D, Poethig RS. miRNA control of vegetative phase change in trees. Plos Genetics. 7: e1002012. PMID 21383862 DOI: 10.1371/Journal.Pgen.1002012  0.63
2011 Weigel D. What developmental biologists can learn from plant pathogens. Developmental Cell. 20: e2. PMID 21316579 DOI: 10.1016/J.Devcel.2011.02.003  0.369
2011 Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proceedings of the National Academy of Sciences of the United States of America. 108: 2322-7. PMID 21252301 DOI: 10.1073/Pnas.1018222108  0.805
2011 Watson CT, Gray SM, Hoffmann M, Lubieniecki KP, Joy JB, Sandkam BA, Weigel D, Loew E, Dreyer C, Davidson WS, Breden F. Gene duplication and divergence of long wavelength-sensitive opsin genes in the guppy, Poecilia reticulata. Journal of Molecular Evolution. 72: 240-52. PMID 21170644 DOI: 10.1007/S00239-010-9426-Z  0.396
2011 de Felippes FF, Ott F, Weigel D. Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana. Nucleic Acids Research. 39: 2880-9. PMID 21134910 DOI: 10.1093/Nar/Gkq1240  0.791
2011 Grimm DG, Hagmann J, Koenig D, Weigel D, Borgwardt K. Support vector machines for finding deletions and short insertions using paired-end short reads F1000research. 2. DOI: 10.7490/F1000Research.2126.1  0.741
2011 Klotzbücher K, Kobayashi Y, Shervashidze N, Stegle O, Müller-Myhsok B, Weigel D, Borgwardt K. Efficient branch-and-bound techniques for two-locus association mapping Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S11-A3  0.603
2010 Salomé PA, Weigel D, McClung CR. The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation. The Plant Cell. 22: 3650-61. PMID 21098730 DOI: 10.1105/Tpc.110.079087  0.301
2010 Wollmann H, Mica E, Todesco M, Long JA, Weigel D. On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development (Cambridge, England). 137: 3633-42. PMID 20876650 DOI: 10.1242/Dev.036673  0.685
2010 Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D. Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 107: 17466-73. PMID 20870966 DOI: 10.1073/Pnas.1012891107  0.747
2010 Heard E, Tishkoff S, Todd JA, Vidal M, Wagner GP, Wang J, Weigel D, Young R. Ten years of genetics and genomics: what have we achieved and where are we heading? Nature Reviews. Genetics. 11: 723-33. PMID 20820184 DOI: 10.1038/Nrg2878  0.363
2010 Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D. A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. Plos Genetics. 6: e1001031. PMID 20661442 DOI: 10.1371/Journal.Pgen.1001031  0.338
2010 Rosloski SM, Jali SS, Balasubramanian S, Weigel D, Grbic V. Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics. 186: 263-76. PMID 20551443 DOI: 10.1534/Genetics.110.116392  0.753
2010 Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, ... ... Weigel D, et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465: 632-6. PMID 20520716 DOI: 10.1038/Nature09083  0.816
2010 Gonzalez N, De Bodt S, Sulpice R, Jikumaru Y, Chae E, Dhondt S, Van Daele T, De Milde L, Weigel D, Kamiya Y, Stitt M, Beemster GT, Inzé D. Increased leaf size: different means to an end. Plant Physiology. 153: 1261-79. PMID 20460583 DOI: 10.1104/Pp.110.156018  0.366
2010 Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, ... ... Weigel D, et al. Climate change and the integrity of science. Science (New York, N.Y.). 328: 689-90. PMID 20448167 DOI: 10.1126/Science.328.5979.689  0.522
2010 Bomblies K, Weigel D. Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1815-23. PMID 20439283 DOI: 10.1098/Rstb.2009.0304  0.704
2010 Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. The Plant Cell. 22: 1074-89. PMID 20407027 DOI: 10.1105/Tpc.110.073999  0.778
2010 Laitinen RA, Schneeberger K, Jelly NS, Ossowski S, Weigel D. Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiology. 153: 652-4. PMID 20388671 DOI: 10.1104/Pp.110.156448  0.776
2010 Bomblies K, Yant L, Laitinen RA, Kim ST, Hollister JD, Warthmann N, Fitz J, Weigel D. Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. Plos Genetics. 6: e1000890. PMID 20361058 DOI: 10.1371/Journal.Pgen.1000890  0.802
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Weigel D, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.59
2010 Tautz D, Ellegren H, Weigel D. Next generation molecular ecology. Molecular Ecology. 19: 1-3. PMID 20331765 DOI: 10.1111/J.1365-294X.2009.04489.X  0.479
2010 Koo SC, Bracko O, Park MS, Schwab R, Chun HJ, Park KM, Seo JS, Grbic V, Balasubramanian S, Schmid M, Godard F, Yun DJ, Lee SY, Cho MJ, Weigel D, et al. Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6. The Plant Journal : For Cell and Molecular Biology. 62: 807-16. PMID 20230491 DOI: 10.1111/J.1365-313X.2010.04192.X  0.763
2010 Massonnet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, ... ... Weigel D, et al. Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiology. 152: 2142-57. PMID 20200072 DOI: 10.1104/Pp.109.148338  0.37
2010 Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, ... ... Weigel D, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/Journal.Pgen.1000843  0.66
2010 Willing EM, Bentzen P, van Oosterhout C, Hoffmann M, Cable J, Breden F, Weigel D, Dreyer C. Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology. 19: 968-84. PMID 20149094 DOI: 10.1111/J.1365-294X.2010.04528.X  0.382
2010 Skylar A, Hong F, Chory J, Weigel D, Wu X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. Development (Cambridge, England). 137: 541-9. PMID 20110319 DOI: 10.1242/Dev.041426  0.566
2010 Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W. Transcriptional control of gene expression by microRNAs. Cell. 140: 111-22. PMID 20085706 DOI: 10.1016/J.Cell.2009.12.023  0.627
2010 Ossowski S, Schneeberger K, Lucas-Lledó JI, Warthmann N, Clark RM, Shaw RG, Weigel D, Lynch M. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science (New York, N.Y.). 327: 92-4. PMID 20044577 DOI: 10.1126/Science.1180677  0.661
2010 Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiology. 152: 487-99. PMID 20032078 DOI: 10.1104/Pp.109.150185  0.735
2010 Wollmann H, Weigel D. Small RNAs in flower development. European Journal of Cell Biology. 89: 250-7. PMID 20031253 DOI: 10.1016/J.Ejcb.2009.11.004  0.405
2010 de Felippes FF, Weigel D. Transient assays for the analysis of miRNA processing and function. Methods in Molecular Biology (Clifton, N.J.). 592: 255-64. PMID 19802601 DOI: 10.1007/978-1-60327-005-2_17  0.794
2010 Schwab R, Ossowski S, Warthmann N, Weigel D. Directed gene silencing with artificial microRNAs. Methods in Molecular Biology (Clifton, N.J.). 592: 71-88. PMID 19802590 DOI: 10.1007/978-1-60327-005-2_6  0.666
2010 Lippert C, Stegle O, Nickisch H, Borgwardt K, Weigel D. Experimental design for genome-wide association studies F1000research. 1. DOI: 10.7490/F1000Research.324.1  0.626
2010 Nordborg M, Weigel D. Evolutionary and Population Genetics of Plants Annual Review of Genetics. 45: 110301100158074. DOI: 10.1146/Annurev-Genet-110410-132449  0.367
2009 Weigel D, Glazebrook J. Phenotypic analysis of Arabidopsis mutants: bacterial pathogens. Cold Spring Harbor Protocols. 2009: pdb.prot4983. PMID 20147202 DOI: 10.1101/Pdb.Prot4983  0.361
2009 Out AA, van Minderhout IJ, Goeman JJ, Ariyurek Y, Ossowski S, Schneeberger K, Weigel D, van Galen M, Taschner PE, Tops CM, Breuning MH, van Ommen GJ, den Dunnen JT, Devilee P, Hes FJ. Deep sequencing to reveal new variants in pooled DNA samples. Human Mutation. 30: 1703-12. PMID 19842214 DOI: 10.1002/Humu.21122  0.607
2009 Schneeberger K, Hagmann J, Ossowski S, Warthmann N, Gesing S, Kohlbacher O, Weigel D. Simultaneous alignment of short reads against multiple genomes. Genome Biology. 10: R98. PMID 19761611 DOI: 10.1186/Gb-2009-10-9-R98  0.623
2009 Mirouze M, Reinders J, Bucher E, Nishimura T, Schneeberger K, Ossowski S, Cao J, Weigel D, Paszkowski J, Mathieu O. Selective epigenetic control of retrotransposition in Arabidopsis. Nature. 461: 427-30. PMID 19734882 DOI: 10.1038/Nature08328  0.644
2009 Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell. 138: 750-9. PMID 19703400 DOI: 10.1016/J.Cell.2009.06.031  0.392
2009 Wang JW, Czech B, Weigel D. miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell. 138: 738-49. PMID 19703399 DOI: 10.1016/J.Cell.2009.06.014  0.466
2009 Rubio-Somoza I, Cuperus JT, Weigel D, Carrington JC. Regulation and functional specialization of small RNA-target nodes during plant development. Current Opinion in Plant Biology. 12: 622-7. PMID 19699140 DOI: 10.1016/J.Pbi.2009.07.003  0.333
2009 Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 183: 723-32, 1SI-7SI. PMID 19652183 DOI: 10.1534/Genetics.109.104984  0.824
2009 Schneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, Jørgensen JE, Weigel D, Andersen SU. SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods. 6: 550-1. PMID 19644454 DOI: 10.1038/Nmeth0809-550  0.726
2009 McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, ... ... Weigel D, et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 12273-8. PMID 19597147 DOI: 10.1073/Pnas.0900992106  0.546
2009 Weigel D, Mott R. The 1001 genomes project for Arabidopsis thaliana. Genome Biology. 10: 107. PMID 19519932 DOI: 10.1186/Gb-2009-10-5-107  0.386
2009 Trigueros M, Navarrete-Gómez M, Sato S, Christensen SK, Pelaz S, Weigel D, Yanofsky MF, Ferrándiz C. The NGATHA genes direct style development in the Arabidopsis gynoecium. The Plant Cell. 21: 1394-409. PMID 19435937 DOI: 10.1105/Tpc.109.065508  0.811
2009 Maier AT, Stehling-Sun S, Wollmann H, Demar M, Hong RL, Haubeiss S, Weigel D, Lohmann JU. Dual roles of the bZIP transcription factor PERIANTHIA in the control of floral architecture and homeotic gene expression. Development (Cambridge, England). 136: 1613-20. PMID 19395639 DOI: 10.1242/Dev.033647  0.789
2009 Tripathi N, Hoffmann M, Willing EM, Lanz C, Weigel D, Dreyer C. Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings. Biological Sciences / the Royal Society. 276: 2195-208. PMID 19324769 DOI: 10.1098/Rspb.2008.1930  0.349
2009 Guo YL, Bechsgaard JS, Slotte T, Neuffer B, Lascoux M, Weigel D, Schierup MH. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the United States of America. 106: 5246-51. PMID 19307580 DOI: 10.1073/Pnas.0808012106  0.704
2009 Plantegenet S, Weber J, Goldstein DR, Zeller G, Nussbaumer C, Thomas J, Weigel D, Harshman K, Hardtke CS. Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Molecular Systems Biology. 5: 242. PMID 19225455 DOI: 10.1038/Msb.2008.79  0.697
2009 Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. The Plant Journal : For Cell and Molecular Biology. 58: 1068-82. PMID 19222804 DOI: 10.1111/J.1365-313X.2009.03835.X  0.735
2009 Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. Plos One. 4: e4318. PMID 19183806 DOI: 10.1371/Journal.Pone.0004318  0.795
2009 Sureshkumar S, Todesco M, Schneeberger K, Harilal R, Balasubramanian S, Weigel D. A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science (New York, N.Y.). 323: 1060-3. PMID 19150812 DOI: 10.1126/Science.1164014  0.714
2009 Molnar A, Bassett A, Thuenemann E, Schwach F, Karkare S, Ossowski S, Weigel D, Baulcombe D. Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. The Plant Journal : For Cell and Molecular Biology. 58: 165-74. PMID 19054357 DOI: 10.1111/J.1365-313X.2008.03767.X  0.699
2009 Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal : For Cell and Molecular Biology. 57: 184-94. PMID 18764924 DOI: 10.1111/J.1365-313X.2008.03662.X  0.416
2008 Weigel D, Glazebrook J. Genetic analysis of Arabidopsis mutants. Csh Protocols. 2008: pdb.top35. PMID 21356798 DOI: 10.1101/Pdb.Top35  0.308
2008 Nordborg M, Weigel D. Next-generation genetics in plants. Nature. 456: 720-3. PMID 19079047 DOI: 10.1038/Nature07629  0.436
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, ... ... Weigel D, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  0.77
2008 Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 17193-8. PMID 18971337 DOI: 10.1073/Pnas.0807264105  0.554
2008 Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D. Evolution of Arabidopsis thaliana microRNAs from random sequences. Rna (New York, N.Y.). 14: 2455-9. PMID 18952822 DOI: 10.1261/Rna.1149408  0.374
2008 Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Research. 18: 2024-33. PMID 18818371 DOI: 10.1101/Gr.080200.108  0.691
2008 Schommer C, Palatnik JF, Aggarwal P, Chételat A, Cubas P, Farmer EE, Nath U, Weigel D. Control of jasmonate biosynthesis and senescence by miR319 targets. Plos Biology. 6: e230. PMID 18816164 DOI: 10.1371/Journal.Pbio.0060230  0.322
2008 Khraiwesh B, Ossowski S, Weigel D, Reski R, Frank W. Specific gene silencing by artificial MicroRNAs in Physcomitrella patens: an alternative to targeted gene knockouts. Plant Physiology. 148: 684-93. PMID 18753280 DOI: 10.1104/Pp.108.128025  0.641
2008 Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D. At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biology. 9: R112. PMID 18613972 DOI: 10.1186/Gb-2008-9-7-R112  0.738
2008 Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 133: 939-43. PMID 18555767 DOI: 10.1016/J.Cell.2008.05.040  0.713
2008 Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 8795-800. PMID 18550839 DOI: 10.1073/Pnas.0802493105  0.783
2008 Wang JW, Schwab R, Czech B, Mica E, Weigel D. Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. The Plant Cell. 20: 1231-43. PMID 18492871 DOI: 10.1105/Tpc.108.058180  0.478
2008 Hanikenne M, Talke IN, Haydon MJ, Lanz C, Nolte A, Motte P, Kroymann J, Weigel D, Krämer U. Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature. 453: 391-5. PMID 18425111 DOI: 10.1038/Nature06877  0.337
2008 Warthmann N, Chen H, Ossowski S, Weigel D, Hervé P. Highly specific gene silencing by artificial miRNAs in rice. Plos One. 3: e1829. PMID 18350165 DOI: 10.1371/Journal.Pone.0001829  0.635
2008 Zeller G, Clark RM, Schneeberger K, Bohlen A, Weigel D, Rätsch G. Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Research. 18: 918-29. PMID 18323538 DOI: 10.1101/Gr.070169.107  0.5
2008 Warthmann N, Das S, Lanz C, Weigel D. Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Molecular Biology and Evolution. 25: 892-902. PMID 18296705 DOI: 10.1093/Molbev/Msn029  0.686
2008 Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proceedings of the National Academy of Sciences of the United States of America. 105: 3157-62. PMID 18287016 DOI: 10.1073/Pnas.0712174105  0.802
2008 Ossowski S, Schwab R, Weigel D. Gene silencing in plants using artificial microRNAs and other small RNAs. The Plant Journal : For Cell and Molecular Biology. 53: 674-90. PMID 18269576 DOI: 10.1111/J.1365-313X.2007.03328.X  0.668
2008 Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G. Transcript normalization and segmentation of tiling array data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 527-38. PMID 18229713  0.684
2007 Bomblies K, Weigel D. Arabidopsis: a model genus for speciation. Current Opinion in Genetics & Development. 17: 500-4. PMID 18006296 DOI: 10.1016/J.Gde.2007.09.006  0.704
2007 Weigel D, Dangl JL. 10 years of Current Opinion in Plant Biology 1997-2007 Current Opinion in Plant Biology. 10: 543-545. PMID 17977782 DOI: 10.1016/J.Pbi.2007.10.001  0.312
2007 Kobayashi Y, Weigel D. Move on up, it's time for change--mobile signals controlling photoperiod-dependent flowering. Genes & Development. 21: 2371-84. PMID 17908925 DOI: 10.1101/Gad.1589007  0.368
2007 Michniewicz M, Zago MK, Abas L, Weijers D, Schweighofer A, Meskiene I, Heisler MG, Ohno C, Zhang J, Huang F, Schwab R, Weigel D, Meyerowitz EM, Luschnig C, Offringa R, et al. Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell. 130: 1044-56. PMID 17889649 DOI: 10.1016/J.Cell.2007.07.033  0.749
2007 Bomblies K, Lempe J, Epple P, Warthmann N, Lanz C, Dangl JL, Weigel D. Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. Plos Biology. 5: e236. PMID 17803357 DOI: 10.1371/Journal.Pbio.0050236  0.708
2007 Wang Q, Sajja U, Rosloski S, Humphrey T, Kim MC, Bomblies K, Weigel D, Grbic V. HUA2 caused natural variation in shoot morphology of A. thaliana. Current Biology : Cb. 17: 1513-9. PMID 17764945 DOI: 10.1016/J.Cub.2007.07.059  0.738
2007 Wu X, Chory J, Weigel D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Developmental Biology. 309: 306-16. PMID 17706632 DOI: 10.1016/J.Ydbio.2007.07.019  0.529
2007 Dreyer C, Hoffmann M, Lanz C, Willing EM, Riester M, Warthmann N, Sprecher A, Tripathi N, Henz SR, Weigel D. ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata. Bmc Genomics. 8: 269. PMID 17686157 DOI: 10.1186/1471-2164-8-269  0.371
2007 Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M. Recombination and linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 39: 1151-5. PMID 17676040 DOI: 10.1038/Ng2115  0.678
2007 Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, Hu TT, Clark RM, Nasrallah JB, Weigel D, Nordborg M. The evolution of selfing in Arabidopsis thaliana. Science (New York, N.Y.). 317: 1070-2. PMID 17656687 DOI: 10.1126/Science.1143153  0.723
2007 Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, García JA, Paz-Ares J. Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics. 39: 1033-7. PMID 17643101 DOI: 10.1038/Ng2079  0.311
2007 Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, ... ... Weigel D, et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (New York, N.Y.). 317: 338-42. PMID 17641193 DOI: 10.1126/Science.1138632  0.709
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  0.612
2007 Henz SR, Cumbie JS, Kasschau KD, Lohmann JU, Carrington JC, Weigel D, Schmid M. Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiology. 144: 1247-55. PMID 17496106 DOI: 10.1104/Pp.107.100396  0.754
2007 Bomblies K, Weigel D. Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nature Reviews. Genetics. 8: 382-93. PMID 17404584 DOI: 10.1038/Nrg2082  0.699
2007 Hoffmann M, Tripathi N, Henz SR, Lindholm AK, Weigel D, Breden F, Dreyer C. Opsin gene duplication and diversification in the guppy, a model for sexual selection. Proceedings. Biological Sciences / the Royal Society. 274: 33-42. PMID 17015333 DOI: 10.1098/Rspb.2006.3707  0.361
2006 Weigel D, Glazebrook J. Forward Genetics in Arabidopsis: Finding Mutations that Cause Particular Phenotypes. Csh Protocols. 2006. PMID 22485971 DOI: 10.1101/Pdb.Top1  0.312
2006 Weigel D, Glazebrook J. Screening DNA Pools for T-DNA Insertions in Arabidopsis Genes. Csh Protocols. 2006. PMID 22485969 DOI: 10.1101/Pdb.Prot4622  0.396
2006 Weigel D, Glazebrook J. EMS Mutagenesis of Arabidopsis Seed. Csh Protocols. 2006. PMID 22485968 DOI: 10.1101/Pdb.Prot4621  0.369
2006 Weigel D, Glazebrook J. Glufosinate ammonium selection of transformed Arabidopsis. Csh Protocols. 2006. PMID 22484686 DOI: 10.1101/Pdb.Prot4670  0.328
2006 Balasubramanian S, Weigel D. Temperature Induced Flowering in Arabidopsis thaliana. Plant Signaling & Behavior. 1: 227-8. PMID 19704664 DOI: 10.4161/Psb.1.5.3452  0.739
2006 Sliwinski MK, White MA, Maizel A, Weigel D, Baum DA. Evolutionary divergence of LFY function in the mustards Arabidopsis thaliana and Leavenworthia crassa. Plant Molecular Biology. 62: 279-89. PMID 16915521 DOI: 10.1007/S11103-006-9020-3  0.722
2006 Balasubramanian S, Sureshkumar S, Lempe J, Weigel D. Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. Plos Genetics. 2: e106. PMID 16839183 DOI: 10.1371/Journal.Pgen.0020106  0.726
2006 Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics. 38: 711-5. PMID 16732287 DOI: 10.1038/Ng1818  0.821
2006 Dinneny JR, Weigel D, Yanofsky MF. NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development (Cambridge, England). 133: 1645-55. PMID 16554365 DOI: 10.1242/Dev.02335  0.759
2006 Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D. Highly specific gene silencing by artificial microRNAs in Arabidopsis. The Plant Cell. 18: 1121-33. PMID 16531494 DOI: 10.1105/Tpc.105.039834  0.624
2006 Ahn JH, Miller D, Winter VJ, Banfield MJ, Lee JH, Yoo SY, Henz SR, Brady RL, Weigel D. A divergent external loop confers antagonistic activity on floral regulators FT and TFL1. The Embo Journal. 25: 605-14. PMID 16424903 DOI: 10.1038/Sj.Emboj.7600950  0.536
2006 Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH. Identification of plant microRNA homologs. Bioinformatics (Oxford, England). 22: 359-60. PMID 16317073 DOI: 10.1093/Bioinformatics/Bti802  0.334
2005 Lee JH, Cho YS, Yoon HS, Suh MC, Moon J, Lee I, Weigel D, Yun CH, Kim JK. Conservation and divergence of FCA function between Arabidopsis and rice. Plant Molecular Biology. 58: 823-38. PMID 16240176 DOI: 10.1007/S11103-005-8105-8  0.703
2005 Dinneny JR, Weigel D, Yanofsky MF. A genetic framework for fruit patterning in Arabidopsis thaliana. Development (Cambridge, England). 132: 4687-96. PMID 16192305 DOI: 10.1242/Dev.02062  0.776
2005 Lempe J, Balasubramanian S, Sureshkumar S, Singh A, Schmid M, Weigel D. Diversity of flowering responses in wild Arabidopsis thaliana strains. Plos Genetics. 1: 109-18. PMID 16103920 DOI: 10.1371/Journal.Pgen.0010006  0.803
2005 Wigge PA, Kim MC, Jaeger KE, Busch W, Schmid M, Lohmann JU, Weigel D. Integration of spatial and temporal information during floral induction in Arabidopsis. Science (New York, N.Y.). 309: 1056-9. PMID 16099980 DOI: 10.1126/Science.1114358  0.797
2005 Weigel D, Nordborg M. Natural variation in Arabidopsis. How do we find the causal genes? Plant Physiology. 138: 567-8. PMID 15955918 DOI: 10.1104/Pp.104.900157  0.368
2005 Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 170: 1197-207. PMID 15911588 DOI: 10.1534/Genetics.104.036533  0.596
2005 Maizel A, Busch MA, Tanahashi T, Perkovic J, Kato M, Hasebe M, Weigel D. The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science (New York, N.Y.). 308: 260-3. PMID 15821093 DOI: 10.1126/Science.1108229  0.697
2005 Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D. Specific effects of microRNAs on the plant transcriptome. Developmental Cell. 8: 517-27. PMID 15809034 DOI: 10.1016/J.Devcel.2005.01.018  0.335
2005 Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. A gene expression map of Arabidopsis thaliana development. Nature Genetics. 37: 501-6. PMID 15806101 DOI: 10.1038/Ng1543  0.794
2005 Weigel D, Jürgens G. Genetics: hotheaded healer. Nature. 434: 443. PMID 15791234 DOI: 10.1038/434443A  0.456
2005 Wu X, Dabi T, Weigel D. Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Current Biology : Cb. 15: 436-40. PMID 15753038 DOI: 10.1016/J.Cub.2004.12.079  0.379
2005 Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America. 102: 2460-5. PMID 15695584 DOI: 10.1073/Pnas.0409474102  0.619
2005 Yoo SY, Bomblies K, Yoo SK, Yang JW, Choi MS, Lee JS, Weigel D, Ahn JH. The 35S promoter used in a selectable marker gene of a plant transformation vector affects the expression of the transgene. Planta. 221: 523-30. PMID 15682278 DOI: 10.1007/S00425-004-1466-4  0.751
2004 Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470  0.389
2004 Yoo SY, Kardailsky I, Lee JS, Weigel D, Ahn JH. Acceleration of flowering by overexpression of MFT (MOTHER OF FT AND TFL1). Molecules and Cells. 17: 95-101. PMID 15055534  0.52
2004 Maizel A, Weigel D. Temporally and spatially controlled induction of gene expression in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 38: 164-71. PMID 15053769 DOI: 10.1111/J.1365-313X.2004.02027.X  0.704
2004 Lohmann JU, Weigel D. From tough nuts to touch-me-nots. Cell. 116: 763-4. PMID 15035977 DOI: 10.1016/S0092-8674(04)00254-5  0.744
2004 Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. The role of JAGGED in shaping lateral organs. Development (Cambridge, England). 131: 1101-10. PMID 14973282 DOI: 10.1242/Dev.00949  0.756
2004 Bisseling T, Weigel D. Plant development: from cell fate to organ formation. The Plant Cell. 13: 221-7. PMID 11226181 DOI: 10.1105/Tpc.13.2.221  0.352
2003 Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, Weigel D, Lohmann JU. Dissection of floral induction pathways using global expression analysis. Development (Cambridge, England). 130: 6001-12. PMID 14573523 DOI: 10.1242/Dev.00842  0.791
2003 Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D. Control of leaf morphogenesis by microRNAs. Nature. 425: 257-63. PMID 12931144 DOI: 10.1038/Nature01958  0.447
2003 Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, ... ... Weigel D, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (New York, N.Y.). 301: 653-7. PMID 12893945 DOI: 10.1126/Science.1086391  0.431
2003 Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D. Modes of intercellular transcription factor movement in the Arabidopsis apex. Development (Cambridge, England). 130: 3735-45. PMID 12835390 DOI: 10.1242/Dev.00577  0.634
2003 Durfee T, Roe JL, Sessions RA, Inouye C, Serikawa K, Feldmann KA, Weigel D, Zambryski PC. The F-box-containing protein UFO and AGAMOUS participate in antagonistic pathways governing early petal development in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 8571-6. PMID 12826617 DOI: 10.1073/Pnas.1033043100  0.363
2003 Hong RL, Hamaguchi L, Busch MA, Weigel D. Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing. The Plant Cell. 15: 1296-309. PMID 12782724 DOI: 10.1105/Tpc.009548  0.74
2003 Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research. 13: 513-23. PMID 12618383 DOI: 10.1101/Gr.541303  0.593
2003 Blázquez MA, Ahn JH, Weigel D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nature Genetics. 33: 168-71. PMID 12548286 DOI: 10.1038/Ng1085  0.684
2002 Blázquez MA, Trénor M, Weigel D. Independent control of gibberellin biosynthesis and flowering time by the circadian clock in Arabidopsis. Plant Physiology. 130: 1770-5. PMID 12481060 DOI: 10.1104/Pp.007625  0.602
2002 Parcy F, Bomblies K, Weigel D. Interaction of LEAFY, AGAMOUS and TERMINAL FLOWER1 in maintaining floral meristem identity in Arabidopsis. Development (Cambridge, England). 129: 2519-27. PMID 11973282  0.788
2002 Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics. 160: 683-96. PMID 11861571  0.679
2002 Lohmann JU, Weigel D. Building beauty: the genetic control of floral patterning. Developmental Cell. 2: 135-42. PMID 11832239 DOI: 10.1016/S1534-5807(02)00122-3  0.773
2002 Yun JY, Weigel D, Lee I. Ectopic expression of SUPERMAN suppresses development of petals and stamens. Plant & Cell Physiology. 43: 52-7. PMID 11828022 DOI: 10.1093/Pcp/Pcf018  0.616
2002 Wu X, Weigel D, Wigge PA. Signaling in plants by intercellular RNA and protein movement. Genes & Development. 16: 151-8. PMID 11799058 DOI: 10.1101/Gad.952002  0.664
2002 Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/Ng813  0.715
2001 Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J. Natural variation in light sensitivity of Arabidopsis. Nature Genetics. 29: 441-6. PMID 11726931 DOI: 10.1038/Ng777  0.726
2001 Ahearn KP, Johnson HA, Weigel D, Wagner DR. NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant & Cell Physiology. 42: 1130-9. PMID 11673629 DOI: 10.1093/Pcp/Pce143  0.394
2001 Lohmann JU, Hong RL, Hobe M, Busch MA, Parcy F, Simon R, Weigel D. A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell. 105: 793-803. PMID 11440721 DOI: 10.1016/S0092-8674(01)00384-1  0.798
2001 Mimida N, Goto K, Kobayashi Y, Araki T, Ahn JH, Weigel D, Murata M, Motoyoshi F, Sakamoto W. Functional divergence of the TFL1-like gene family in Arabidopsis revealed by characterization of a novel homologue. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 6: 327-36. PMID 11318875 DOI: 10.1046/J.1365-2443.2001.00425.X  0.576
2001 Gocal GF, King RW, Blundell CA, Schwartz OM, Andersen CH, Weigel D. Evolution of floral meristem identity genes. Analysis of Lolium temulentum genes related to APETALA1 and LEAFY of Arabidopsis. Plant Physiology. 125: 1788-801. PMID 11299359 DOI: 10.1104/Pp.125.4.1788  0.379
2001 Wigge PA, Weigel D. Arabidopsis genome: life without notch. Current Biology : Cb. 11: R112-4. PMID 11231172 DOI: 10.1016/S0960-9822(01)00043-4  0.695
2001 Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science (New York, N.Y.). 291: 306-9. PMID 11209081 DOI: 10.1126/Science.291.5502.306  0.796
2001 Benfey PN, Weigel D. Transcriptional networks controlling plant development Plant Physiology. 125: 109-111. PMID 11154309 DOI: 10.1104/Pp.125.1.109  0.595
2001 He Z, Zhu Q, Dabi T, Li D, Weigel D, Lamb C. Transformation of rice with the Arabidopsis floral regulator LEAFY causes early heading. Transgenic Research. 9: 223-7. PMID 11032371 DOI: 10.1023/A:1008992719010  0.382
2001 Gocal GF, Sheldon CC, Gubler F, Moritz T, Bagnall DJ, MacMillan CP, Li SF, Parish RW, Dennis ES, Weigel D, King RW. GAMYB-like Genes, Flowering, and Gibberellin Signaling in Arabidopsis Plant Physiology. 127: 1682-1693. DOI: 10.1104/Pp.010442  0.338
2000 Maloof JN, Borevitz JO, Weigel D, Chory J. Natural variation in phytochrome signaling. Seminars in Cell & Developmental Biology. 11: 523-30. PMID 11145882 DOI: 10.1006/Scdb.2000.0198  0.719
2000 Sessions A, Yanofsky MF, Weigel D. Cell-cell signaling and movement by the floral transcription factors LEAFY and APETALA1. Science (New York, N.Y.). 289: 779-82. PMID 10926540 DOI: 10.1126/Science.289.5480.779  0.62
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423  0.528
2000 Blázquez MA, Weigel D. Integration of floral inductive signals in Arabidopsis. Nature. 404: 889-92. PMID 10786797 DOI: 10.1038/35009125  0.623
2000 Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, et al. Activation tagging in Arabidopsis. Plant Physiology. 122: 1003-13. PMID 10759496 DOI: 10.1104/Pp.122.4.1003  0.815
2000 Christensen SK, Dagenais N, Chory J, Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell. 100: 469-78. PMID 10693763 DOI: 10.1016/S0092-8674(00)80682-0  0.804
1999 Bomblies K, Dagenais N, Weigel D. Redundant enhancers mediate transcriptional repression of AGAMOUS by APETALA2. Developmental Biology. 216: 260-4. PMID 10588876 DOI: 10.1006/Dbio.1999.9504  0.678
1999 Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D. Activation tagging of the floral inducer FT Science. 286: 1962-1965. PMID 10583961 DOI: 10.1126/Science.286.5446.1962  0.799
1999 Sessions A, Weigel D, Yanofsky MF. The Arabidopsis thaliana MERISTEM LAYER 1 promoter specifies epidermal expression in meristems and young primordia. The Plant Journal : For Cell and Molecular Biology. 20: 259-63. PMID 10571886 DOI: 10.1046/J.1365-313X.1999.00594.X  0.662
1999 Blázquez MA, Weigel D. Independent regulation of flowering by phytochrome B and gibberellins in Arabidopsis. Plant Physiology. 120: 1025-32. PMID 10444085 DOI: 10.1104/Pp.120.4.1025  0.608
1999 Busch MA, Bomblies K, Weigel D. Activation of a floral homeotic gene in Arabidopsis. Science (New York, N.Y.). 285: 585-7. PMID 10417388 DOI: 10.1126/Science.285.5427.585  0.7
1999 Aukerman MJ, Lee I, Weigel D, Amasino RM. The Arabidopsis flowering-time gene LUMINIDEPENDENS is expressed primarily in regions of cell proliferation and encodes a nuclear protein that regulates LEAFY expression. The Plant Journal : For Cell and Molecular Biology. 18: 195-203. PMID 10363371 DOI: 10.1046/J.1365-313X.1999.00442.X  0.777
1999 Weigel D. From floral induction to floral shape. Current Opinion in Plant Biology. 1: 55-9. PMID 10066563 DOI: 10.1016/S1369-5266(98)80128-3  0.395
1998 Nilsson O, Wu E, Wolfe DS, Weigel D. Genetic ablation of flowers in transgenic Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 15: 799-804. PMID 9807818 DOI: 10.1046/J.1365-313X.1998.00260.X  0.683
1998 Parcy F, Nilsson O, Busch MA, Lee I, Weigel D. A genetic framework for floral patterning. Nature. 395: 561-6. PMID 9783581 DOI: 10.1038/26903  0.813
1998 Christensen S, Weigel D. Plant development: the making of a leaf. Current Biology : Cb. 8: R643-5. PMID 9740791 DOI: 10.1016/S0960-9822(07)00412-5  0.32
1998 Nilsson O, Lee I, Blázquez MA, Weigel D. Flowering-time genes modulate the response to LEAFY activity. Genetics. 150: 403-10. PMID 9725856  0.77
1998 Sessions A, Yanofsky MF, Weigel D. Patterning the floral meristem. Seminars in Cell & Developmental Biology. 9: 221-6. PMID 9599419 DOI: 10.1006/Scdb.1997.0206  0.603
1998 Blazquez MA, Green R, Nilsson O, Sussman MR, Weigel D. Gibberellins promote flowering of arabidopsis by activating the LEAFY promoter The Plant Cell. 10: 791-800. PMID 9596637 DOI: 10.1105/Tpc.10.5.791  0.754
1997 Blázquez MA, Soowal LN, Lee I, Weigel D. LEAFY expression and flower initiation in Arabidopsis. Development (Cambridge, England). 124: 3835-44. PMID 9367439  0.638
1997 Weigel D. Flower development: repressing reproduction. Current Biology : Cb. 7: R373-5. PMID 9197223 DOI: 10.1016/S0960-9822(06)00178-3  0.406
1997 Nilsson O, Weigel D. Modulating the timing of flowering. Current Opinion in Biotechnology. 8: 195-9. PMID 9079721 DOI: 10.1016/S0958-1669(97)80102-4  0.681
1997 Lee I, Wolfe DS, Nilsson O, Weigel D. A LEAFY co-regulator encoded by UNUSUAL FLORAL ORGANS. Current Biology : Cb. 7: 95-104. PMID 9016705 DOI: 10.1016/S0960-9822(06)00053-4  0.768
1996 Weigel D. The genetics of flower development: from floral induction to ovule morphogenesis. Annual Review of Genetics. 29: 19-39. PMID 8825467 DOI: 10.1146/Annurev.Ge.29.120195.000315  0.42
1995 Weigel D. Plant development. The SECrets of Arabidopsis embryogenesis. Current Biology : Cb. 4: 1040-2. PMID 7874491 DOI: 10.1016/S0960-9822(00)00238-4  0.379
1995 Weigel D, Nilsson O. A developmental switch sufficient for flower initiation in diverse plants. Nature. 377: 495-500. PMID 7566146 DOI: 10.1038/377495A0  0.692
1994 Brönner G, Chu-LaGraff Q, Doe CQ, Cohen B, Weigel D, Taubert H, Jäckle H. Sp1/egr-like zinc-finger protein required for endoderm specification and germ-layer formation in Drosophila. Nature. 369: 664-8. PMID 8208294 DOI: 10.1038/369664A0  0.314
1994 Weigel D, Meyerowitz EM. The ABCs of floral homeotic genes. Cell. 78: 203-9. PMID 7913881 DOI: 10.1016/0092-8674(94)90291-7  0.583
1993 Weigel D, Meyerowitz EM. Activation of floral homeotic genes in Arabidopsis. Science (New York, N.Y.). 261: 1723-6. PMID 17794879 DOI: 10.1126/Science.261.5129.1723  0.575
1992 Bowman JL, Sakai H, Jack T, Weigel D, Mayer U, Meyerowitz EM. SUPERMAN, a regulator of floral homeotic genes in Arabidopsis Development. 114: 599-615. PMID 1352237  0.812
1992 Weigel D, Alvarez J, Smyth DR, Yanofsky MF, Meyerowitz EM. LEAFY controls floral meristem identity in Arabidopsis. Cell. 69: 843-59. PMID 1350515 DOI: 10.1016/0092-8674(92)90295-N  0.737
1991 Meyerowitz EM, Bowman JL, Brockman LL, Drews GN, Jack T, Sieburth LE, Weigel D. A genetic and molecular model for flower development in Arabidopsis thaliana. Development (Cambridge, England). Supplement. 1: 157-67. PMID 1742498  0.806
1991 Drews GN, Weigel D, Meyerowitz EM. Floral patterning. Current Opinion in Genetics & Development. 1: 174-8. PMID 1688001  0.746
1990 Weigel D, Jürgens G, Klingler M, Jäckle H. Two gap genes mediate maternal terminal pattern information in Drosophila Science. 248: 495-498. PMID 2158673 DOI: 10.1126/Science.2158673  0.307
1990 Gaul U, Weigel D. Regulation of Krüppel expression in the anlage of the Malpighian tubules in the Drosophila embryo. Mechanisms of Development. 33: 57-67. PMID 1982922 DOI: 10.1016/0925-4773(90)90135-9  0.336
1990 Weigel D, Seifert E, Reuter D, Jäckle H. Regulatory elements controlling expression of the Drosophila homeotic gene fork head Embo Journal. 9: 1199-1207. PMID 1969795 DOI: 10.1002/J.1460-2075.1990.Tb08227.X  0.345
1989 Weigel D, Bellen HJ, Jürgens G, Jäckle H. Primordium specific requirement of the homeotic gene fork head in the developing gut of the Drosophila embryo. Roux's Archives of Developmental Biology : the Official Organ of the Edbo. 198: 201-210. PMID 28305483 DOI: 10.1007/BF00375906  0.543
1989 Jäckle H, Gaul U, Nauber U, Gerwin N, Pankratz MJ, Seifert E, Schuh R, Weigel D. Die Naturwissenschaften. 76: 512-517. PMID 27837228 DOI: 10.1186/Gb-2005-6-11-P13  0.331
1989 Jckle H, Gaul U, Nauber U, Gerwin N, Pankratz MJ, Seifert E, Schuh R, Weigel D. [Pattern formation in Drosophila]. Die Naturwissenschaften. 76: 512-7. PMID 2693975 DOI: 10.1007/Bf00374123  0.326
1989 Weigel D, Jäckle H. Novel homeotic genes in Drosophila melanogaster Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 67: 393-396. PMID 2574046 DOI: 10.1139/O89-063  0.359
1989 Weigel D, Jürgens G, Küttner F, Seifert E, Jäckle H. The homeotic gene fork head encodes a nuclear protein and is expressed in the terminal regions of the Drosophila embryo Cell. 57: 645-658. PMID 2566386 DOI: 10.1016/0092-8674(89)90133-5  0.357
1987 Rijsewijk F, Schuermann M, Wagenaar E, Parren P, Weigel D, Nusse R. The Drosophila homology of the mouse mammary oncogene int-1 is identical to the segment polarity gene wingless Cell. 50: 649-657. PMID 3111720 DOI: 10.1016/0092-8674(87)90038-9  0.338
1987 Weigel D, Knust E, Campos-Ortega JA. Molecular organization of master mind, a neurogenic gene of Drosophila melanogaster Mgg Molecular & General Genetics. 207: 374-384. DOI: 10.1007/Bf00331604  0.385
1987 Knust E, Dietrich U, Tepass U, Bremer KA, Weigel D, Vässin H, Campos-Ortega JA. EGF homologous sequences encoded in the genome of Drosophila melanogaster, and their relation to neurogenic genes. The Embo Journal. 6: 761-766. DOI: 10.1002/J.1460-2075.1987.Tb04818.X  0.373
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