Detlef Weigel - Publications

Max-Planck-Institut für Entwicklungsbiologie, Tübingen, Baden-Württemberg, Germany 

357 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Whiting JR, Paris JR, van der Zee MJ, Parsons PJ, Weigel D, Fraser BA. Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. Plos Genetics. 17: e1009566. PMID 34029313 DOI: 10.1371/journal.pgen.1009566  0.44
2021 Li L, Weigel D. One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions. Annual Review of Phytopathology. PMID 33945695 DOI: 10.1146/annurev-phyto-020620-114826  0.64
2021 Ignacio JCI, Zaidem M, Casal C, Dixit S, Kretzschmar T, Samaniego JM, Mendioro MS, Weigel D, Septiningsih EM. Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice. Plants (Basel, Switzerland). 10. PMID 33917499 DOI: 10.3390/plants10040705  1
2021 Monroe JG, McKay JK, Weigel D, Flood PJ. The population genomics of adaptive loss of function. Heredity. PMID 33574599 DOI: 10.1038/s41437-021-00403-2  0.48
2020 Cambiagno DA, Giudicatti AJ, Arce AL, Gagliardi D, Li L, Yuan W, Lundberg DS, Weigel D, Manavella PA. HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing. Molecular Plant. PMID 33385584 DOI: 10.1016/j.molp.2020.12.019  0.72
2020 Antunez-Sanchez J, Naish M, Ramirez-Prado JS, Ohno S, Huang Y, Dawson A, Opassathian K, Manza-Mianza D, Ariel F, Raynaud C, Wibowo A, Daron J, Ueda M, Latrasse D, Slotkin RK, ... Weigel D, et al. A new role for histone demethylases in the maintenance of plant genome integrity. Elife. 9. PMID 33107825 DOI: 10.7554/eLife.58533  1
2020 Barragan AC, Collenberg M, Wang J, Lee RRQ, Cher WY, Rabanal FA, Ashkenazy H, Weigel D, Chae E. A truncated singleton NLR causes hybrid necrosis in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 32966577 DOI: 10.1093/molbev/msaa245  1
2020 Fraser BA, Whiting JR, Paris JR, Weadick CJ, Parsons PJ, Charlesworth D, Bergero R, Bemm F, Hoffmann M, Kottler VA, Liu C, Dreyer C, Weigel D. Improved reference genome uncovers novel sex-linked regions in the guppy (Poecilia reticulata). Genome Biology and Evolution. PMID 32853348 DOI: 10.1093/Gbe/Evaa187  0.84
2020 Montgomery JS, Giacomini D, Waithaka B, Lanz C, Murphy BP, Campe R, Lerchl J, Landes A, Gatzmann F, Janssen A, Antonise R, Patterson E, Weigel D, Tranel PJ. Draft genomes of Amaranthus tuberculatus, Amaranthus hybridus and Amaranthus palmeri. Genome Biology and Evolution. PMID 32835372 DOI: 10.1093/Gbe/Evaa177  0.76
2020 Karasov TL, Shirsekar G, Schwab R, Weigel D. What natural variation can teach us about resistance durability. Current Opinion in Plant Biology. 56: 89-98. PMID 32535454 DOI: 10.1016/J.Pbi.2020.04.010  0.6
2020 Regalado J, Lundberg DS, Deusch O, Kersten S, Karasov T, Poersch K, Shirsekar G, Weigel D. Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. The Isme Journal. PMID 32405027 DOI: 10.1038/S41396-020-0665-8  0.44
2020 Na Ayutthaya PP, Lundberg D, Weigel D, Li L. Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE) for the Analysis of Protein Oligomers in Plants. Current Protocols in Plant Biology. 5: e20107. PMID 32250554 DOI: 10.1002/cppb.20107  0.64
2020 Li L, Habring A, Wang K, Weigel D. Atypical Resistance Protein RPW8/HR Triggers Oligomerization of the NLR Immune Receptor RPP7 and Autoimmunity. Cell Host & Microbe. PMID 32101702 DOI: 10.1016/J.Chom.2020.01.012  0.64
2019 Exposito-Alonso M, Drost HG, Burbano HA, Weigel D. The Earth BioGenome project: Opportunities and Challenges for Plant Genomics and Conservation. The Plant Journal : For Cell and Molecular Biology. PMID 31788877 DOI: 10.1111/Tpj.14631  0.84
2019 Kreiner JM, Giacomini DA, Bemm F, Waithaka B, Regalado J, Lanz C, Hildebrandt J, Sikkema PH, Tranel PJ, Weigel D, Stinchcombe JR, Wright SI. Correction: Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus (Proceedings of the National Academy of Sciences of the United States of America (2019) 116 (21076–21084) DOI: 10.1073/pnas.1900870116) Proceedings of the National Academy of Sciences of the United States of America. 116. PMID 31685627 DOI: 10.1073/Pnas.1917644116  0.76
2019 Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925  1
2019 Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D. Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319. Developmental Cell. 51: 129. PMID 31593649 DOI: 10.1016/j.devcel.2019.09.016  0.76
2019 Exposito-Alonso M, Burbano HA, Bossdorf O, Nielsen R, Weigel D. Publisher Correction: Natural selection on the Arabidopsis thaliana genome in present and future climates. Nature. PMID 31570884 DOI: 10.1038/S41586-019-1626-0  0.84
2019 Kreiner JM, Giacomini DA, Bemm F, Waithaka B, Regalado J, Lanz C, Hildebrandt J, Sikkema PH, Tranel PJ, Weigel D, Stinchcombe JR, Wright SI. Multiple modes of convergent adaptation in the spread of glyphosate-resistant . Proceedings of the National Academy of Sciences of the United States of America. PMID 31570613 DOI: 10.1073/Pnas.1900870116  0.76
2019 Rowan BA, Heavens D, Feuerborn TR, Tock AJ, Henderson IR, Weigel D. An Ultra High-Density Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features. Genetics. PMID 31527048 DOI: 10.1534/Genetics.119.302406  0.84
2019 Exposito-Alonso M, Burbano HA, Bossdorf O, Nielsen R, Weigel D. Natural selection on the Arabidopsis thaliana genome in present and future climates. Nature. PMID 31462776 DOI: 10.1038/S41586-019-1520-9  0.84
2019 Lange H, Ndecky SYA, Gomez-Diaz C, Pflieger D, Butel N, Zumsteg J, Kuhn L, Piermaria C, Chicher J, Christie M, Karaaslan ES, Lang PLM, Weigel D, Vaucheret H, Hammann P, et al. RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. Nature Communications. 10: 3871. PMID 31455787 DOI: 10.1038/S41467-019-11807-4  0.48
2019 Van de Weyer AL, Monteiro F, Furzer OJ, Nishimura MT, Cevik V, Witek K, Jones JDG, Dangl JL, Weigel D, Bemm F. A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. Cell. 178: 1260-1272.e14. PMID 31442410 DOI: 10.1016/J.Cell.2019.07.038  0.64
2019 Barragan CA, Wu R, Kim ST, Xi W, Habring A, Hagmann J, Van de Weyer AL, Zaidem M, Ho WWH, Wang G, Bezrukov I, Weigel D, Chae E. RPW8/HR repeats control NLR activation in Arabidopsis thaliana. Plos Genetics. 15: e1008313. PMID 31344025 DOI: 10.1371/Journal.Pgen.1008313  1
2019 Yoo CY, Pasoreck EK, Wang H, Cao J, Blaha GM, Weigel D, Chen M. Phytochrome activates the plastid-encoded RNA polymerase for chloroplast biogenesis via nucleus-to-plastid signaling. Nature Communications. 10: 2629. PMID 31201355 DOI: 10.1038/S41467-019-10518-0  0.84
2019 Yang EJ, Yoo CY, Liu J, Wang H, Cao J, Li FW, Pryer KM, Sun TP, Weigel D, Zhou P, Chen M. NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches. Nature Communications. 10: 2630. PMID 31201314 DOI: 10.1038/S41467-019-10517-1  0.84
2019 Fang X, Wang L, Ishikawa R, Li Y, Fiedler M, Liu F, Calder G, Rowan B, Weigel D, Li P, Dean C. Arabidopsis FLL2 promotes liquid-liquid phase separation of polyadenylation complexes. Nature. PMID 31043738 DOI: 10.1038/S41586-019-1165-8  0.32
2019 Vasseur F, Fouqueau L, de Vienne D, Nidelet T, Violle C, Weigel D. Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana. Plos Biology. 17: e3000214. PMID 31017902 DOI: 10.1371/Journal.Pbio.3000214  0.72
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Nueffer B, Wright SI, Weigel D. Long-term balancing selection drives evolution of immunity genes in . Elife. 8. PMID 30806624 DOI: 10.7554/Elife.43606  0.72
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Neuffer B, Wright SI, Weigel D. Author response: Long-term balancing selection drives evolution of immunity genes in Capsella Elife. DOI: 10.7554/Elife.43606.048  0.72
2018 Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J. Correction: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. Elife. 7. PMID 30574869 DOI: 10.7554/eLife.44302  1
2018 Weng ML, Becker C, Hildebrandt J, Rutter MT, Shaw RG, Weigel D, Fenster CB. Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in . Genetics. PMID 30514707 DOI: 10.1534/Genetics.118.301721  1
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Weigel D, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  1
2018 Wan WL, Zhang L, Pruitt R, Zaidem M, Brugman R, Ma X, Krol E, Perraki A, Kilian J, Grossmann G, Stahl M, Shan L, Zipfel C, van Kan JAL, Hedrich R, ... Weigel D, et al. Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences. The New Phytologist. PMID 30252144 DOI: 10.1111/Nph.15497  1
2018 Tedeschi F, Rizzo P, Huong BTM, Czihal A, Rutten T, Altschmied L, Scharfenberg S, Grosse I, Becker C, Weigel D, Bäumlein H, Kuhlmann M. EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. The New Phytologist. PMID 30252137 DOI: 10.1111/Nph.15439  1
2018 Zhu W, Zaidem M, Van de Weyer AL, Gutaker RM, Chae E, Kim ST, Bemm F, Li L, Todesco M, Schwab R, Unger F, Beha MJ, Demar M, Weigel D. Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene. Plos Genetics. 14: e1007628. PMID 30235212 DOI: 10.1371/Journal.Pgen.1007628  1
2018 Wibowo A, Becker C, Durr J, Price J, Spaepen S, Hilton S, Putra H, Papareddy R, Saintain Q, Harvey S, Bending GD, Schulze-Lefert P, Weigel D, Gutierrez-Marcos J. Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201727 DOI: 10.1073/Pnas.1805371115  1
2018 Wu R, Lucke M, Jang YT, Zhu W, Symeonidi E, Wang C, Fitz J, Xi W, Schwab R, Weigel D. An efficient CRISPR vector toolbox for engineering large deletions in . Plant Methods. 14: 65. PMID 30083222 DOI: 10.1186/S13007-018-0330-7  1
2018 Vasseur F, Bresson J, Wang G, Schwab R, Weigel D. Image-based methods for phenotyping growth dynamics and fitness components in . Plant Methods. 14: 63. PMID 30065776 DOI: 10.1186/S13007-018-0331-6  1
2018 Karasov TL, Almario J, Friedemann C, Ding W, Giolai M, Heavens D, Kersten S, Lundberg DS, Neumann M, Regalado J, Neher RA, Kemen E, Weigel D. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host & Microbe. 24: 168-179.e4. PMID 30001519 DOI: 10.1016/J.Chom.2018.06.011  0.72
2018 Seymour DK, Chae E, Arioz BI, Koenig D, Weigel D. Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses. Heredity. PMID 29955170 DOI: 10.1038/S41437-018-0107-9  1
2018 Vasseur F, Exposito-Alonso M, Ayala-Garay OJ, Wang G, Enquist BJ, Vile D, Violle C, Weigel D. Adaptive diversification of growth allometry in the plant. Proceedings of the National Academy of Sciences of the United States of America. PMID 29540570 DOI: 10.1073/Pnas.1709141115  1
2018 Tabas-Madrid D, Méndez-Vigo B, Arteaga N, Marcer A, Pascual-Montano A, Weigel D, Xavier Picó F, Alonso-Blanco C. Genome-wide signatures of flowering adaptation to climate temperature: regional analyses in a highly diverse native range of Arabidopsis thaliana. Plant, Cell & Environment. PMID 29520809 DOI: 10.1111/Pce.13189  0.4
2018 Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, ... Weigel D, et al. The rate and potential relevance of new mutations in a colonizing plant lineage. Plos Genetics. 14: e1007155. PMID 29432421 DOI: 10.1371/Journal.Pgen.1007155  1
2018 Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541. PMID 29416032 DOI: 10.1038/S41467-018-03016-2  1
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Weigel D, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  1
2017 Alexandre CM, Urton JR, Jean-Baptiste K, Huddleston JL, Dorrity MW, Cuperus JT, Sullivan AM, Bemm F, Jolic D, Arsovski AA, Thompson A, Nemhauser JL, Fields S, Weigel D, Bubb KL, et al. Complex relationships between chromatin accessibility, sequence divergence, and gene expression in A. thaliana. Molecular Biology and Evolution. PMID 29272536 DOI: 10.1093/Molbev/Msx326  0.84
2017 Exposito-Alonso M, Vasseur F, Ding W, Wang G, Burbano HA, Weigel D. Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana. Nature Ecology & Evolution. PMID 29255303 DOI: 10.1038/S41559-017-0423-0  1
2017 Lang PLM, Christie MD, Dogan ES, Schwab R, Hagmann J, Van de Weyer AL, Scacchi E, Weigel D. A role for the F-box protein HAWAIIAN SKIRT in plant microRNA function. Plant Physiology. PMID 29114080 DOI: 10.1104/Pp.17.01313  0.6
2017 Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954  1
2017 Salvador-Guirao R, Baldrich P, Weigel D, Rubio-Somoza I, San Segundo B. The microRNA miR773 is involved in the Arabidopsis immune response to fungal pathogens. Molecular Plant-Microbe Interactions : Mpmi. PMID 28990488 DOI: 10.1094/Mpmi-05-17-0108-R  0.48
2017 Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE. Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. The New Phytologist. PMID 28906562 DOI: 10.1111/Nph.14781  0.52
2017 Liu C, Cheng YJ, Wang JW, Weigel D. Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis. Nature Plants. PMID 28848243 DOI: 10.1038/S41477-017-0005-9  1
2017 Zhu W, Hu B, Becker C, Doğan ES, Berendzen KW, Weigel D, Liu C. Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biology. 18: 157. PMID 28830561 DOI: 10.1186/S13059-017-1281-4  1
2017 Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, ... ... Weigel D, et al. Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science (New York, N.Y.). 357: 512-515. PMID 28774930 DOI: 10.1126/Science.Aam9425  1
2017 Xin R, Zhu L, Salomé PA, Mancini E, Marshall CM, Harmon FG, Yanovsky MJ, Weigel D, Huq E. SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28760995 DOI: 10.1073/Pnas.1706379114  0.64
2017 Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, ... ... Weigel D, et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics. PMID 28581499 DOI: 10.1038/Ng.3886  1
2017 Ikeda Y, Pélissier T, Bourguet P, Becker C, Pouch-Pélissier MN, Pogorelcnik R, Weingartner M, Weigel D, Deragon JM, Mathieu O. Arabidopsis proteins with a transposon-related domain act in gene silencing. Nature Communications. 8: 15122. PMID 28466841 DOI: 10.1038/Ncomms15122  1
2017 Tran DTN, Chung EH, Habring-Müller A, Demar M, Schwab R, Dangl JL, Weigel D, Chae E. Activation of a Plant NLR Complex through Heteromeric Association with an Autoimmune Risk Variant of Another NLR. Current Biology : Cb. PMID 28416116 DOI: 10.1016/J.Cub.2017.03.018  1
2017 Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RA. Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 28378460 DOI: 10.1111/Tpj.13560  0.72
2017 Nekrasov V, Wang C, Win J, Lanz C, Weigel D, Kamoun S. Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion. Scientific Reports. 7: 482. PMID 28352080 DOI: 10.1038/S41598-017-00578-X  1
2017 Soto-Suárez M, Baldrich P, Weigel D, Rubio-Somoza I, San Segundo B. The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens. Scientific Reports. 7: 44898. PMID 28332603 DOI: 10.1038/Srep44898  0.48
2017 Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nature Communications. 8: 14458. PMID 28181519 DOI: 10.1038/Ncomms14458  1
2017 Catoni M, Griffiths J, Becker C, Zabet NR, Bayon C, Dapp M, Lieberman-Lazarovich M, Weigel D, Paszkowski J. DNA sequence properties that predict susceptibility to epiallelic switching. The Embo Journal. PMID 28069706 DOI: 10.15252/Embj.201695602  1
2017 Rowan BA, Seymour DK, Chae E, Lundberg DS, Weigel D. Methods for Genotyping-by-Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1492: 221-242. PMID 27822868 DOI: 10.1007/978-1-4939-6442-0_16  1
2016 Künstner A, Hoffmann M, Fraser BA, Kottler VA, Sharma E, Weigel D, Dreyer C. The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population. Plos One. 11: e0169087. PMID 28033408 DOI: 10.1371/Journal.Pone.0169087  0.44
2016 Vanhaeren H, Nam YJ, De Milde L, Chae E, Storme V, Weigel D, Gonzalez N, Inzé D. Forever Young: The Role of Ubiquitin Receptor DA1 and E3 Ligase BIG BROTHER in Controlling Leaf Growth and Development. Plant Physiology. PMID 28003326 DOI: 10.1104/Pp.16.01410  1
2016 Grimm DG, Roqueiro D, Salome P, Kleeberger S, Greshake B, Zhu W, Liu C, Lippert C, Stegle O, Schölkopf B, Weigel D, Borgwardt K. easyGWAS: A Cloud-based Platform for Comparing the Results of Genome-wide Association Studies. The Plant Cell. PMID 27986896 DOI: 10.1105/Tpc.16.00551  1
2016 Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M. What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity. PMID 27925617 DOI: 10.1038/Hdy.2016.122  1
2016 Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986  1
2016 Nam YJ, Herman D, Blomme J, Chae E, Kojima M, Coppens F, Storme V, Van Daele T, Dhondt S, Sakakibara H, Weigel D, Inzé D, Gonzalez N. Natural Variation of Molecular and Morphological Gibberellin Responses. Plant Physiology. PMID 27879393 DOI: 10.1104/Pp.16.01626  1
2016 Dueck A, Evers M, Henz SR, Unger K, Eichner N, Merkl R, Berezikov E, Engelmann JC, Weigel D, Wenzl S, Meister G. Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. Bmc Genomics. 17: 853. PMID 27806710 DOI: 10.1186/S12864-016-3202-4  0.48
2016 Mable BK, Hagmann J, Kim ST, Adam A, Kilbride E, Weigel D, Stift M. What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity. PMID 27804968 DOI: 10.1038/Hdy.2016.99  1
2016 Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27803326 DOI: 10.1073/Pnas.1615268113  1
2016 Świadek M, Proost S, Sieh D, Yu J, Todesco M, Jorzig C, Rodriguez Cubillos AE, Plötner B, Nikoloski Z, Chae E, Giavalisco P, Fischer A, Schröder F, Kim ST, Weigel D, et al. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. The New Phytologist. PMID 27588563 DOI: 10.1111/Nph.14155  1
2016 Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, ... ... Weigel D, et al. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics. PMID 27428747 DOI: 10.1038/Ng.3617  1
2016 Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, ... ... Weigel D, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044  1
2016 Iakovidis M, Teixeira PJ, Exposito-Alonso M, Cowper MG, Law TF, Liu Q, Vu MC, Dang TM, Corwin JA, Weigel D, Dangl JL, Grant SR. Effector Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait. Genetics. PMID 27412712 DOI: 10.1534/Genetics.116.190678  1
2016 . 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell. PMID 27293186 DOI: 10.1016/J.Cell.2016.05.063  1
2016 Wibowo A, Becker C, Marconi G, Durr J, Price J, Hagmann J, Papareddy R, Putra H, Kageyama J, Becker J, Weigel D, Gutierrez-Marcos J. Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. Elife. 5. PMID 27242129 DOI: 10.7554/Elife.13546  1
2016 Liu C, Wang C, Wang G, Becker C, Zaidem M, Weigel D. Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. Genome Research. PMID 27225844 DOI: 10.1101/Gr.204032.116  1
2016 Venturelli S, Petersen S, Langenecker T, Weigel D, Lauer UM, Becker C. Allelochemicals of the phenoxazinone class act at physiologically relevant concentrations. Plant Signaling & Behavior. 11: e1176818. PMID 27088968 DOI: 10.1080/15592324.2016.1176818  1
2016 Rigal M, Becker C, Pélissier T, Pogorelcnik R, Devos J, Ikeda Y, Weigel D, Mathieu O. Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27001853 DOI: 10.1073/Pnas.1600672113  1
2016 Chae E, Tran DT, Weigel D. Cooperation and Conflict in the Plant Immune System. Plos Pathogens. 12: e1005452. PMID 26986469 DOI: 10.1371/Journal.Ppat.1005452  1
2016 Weigel D, Bergelson J, Buckler ES, Ecker JR, Nordborg M. A proposal regarding best practices for validating the identity of genetic stocks and the effects of genetic variants. The Plant Cell. PMID 26956491 DOI: 10.1105/Tpc.15.00502  0.72
2016 Agler MT, Ruhe J, Kroll S, Morhenn C, Kim ST, Weigel D, Kemen EM. Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. Plos Biology. 14: e1002352. PMID 26788878 DOI: 10.1371/Journal.Pbio.1002352  0.6
2015 Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, ... ... Weigel D, et al. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants. 1: 14023. PMID 27246759 DOI: 10.1038/Nplants.2014.23  1
2015 Venturelli S, Belz RG, Kämper A, Berger A, von Horn K, Wegner A, Böcker A, Zabulon G, Langenecker T, Kohlbacher O, Barneche F, Weigel D, Lauer UM, Bitzer M, Becker C. Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors. The Plant Cell. PMID 26530086 DOI: 10.1105/Tpc.15.00585  1
2015 Woodson JD, Joens MS, Sinson AB, Gilkerson J, Salomé PA, Weigel D, Fitzpatrick JA, Chory J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. Science (New York, N.Y.). 350: 450-4. PMID 26494759 DOI: 10.1126/Science.Aac7444  1
2015 Lutz U, Posé D, Pfeifer M, Gundlach H, Hagmann J, Wang C, Weigel D, Mayer KF, Schmid M, Schwechheimer C. Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. Plos Genetics. 11: e1005588. PMID 26492483 DOI: 10.1371/Journal.Pgen.1005588  1
2015 Weigel D, Nordborg M. Population Genomics for Understanding Adaptation in Wild Plant Species. Annual Review of Genetics. PMID 26436459 DOI: 10.1146/Annurev-Genet-120213-092110  1
2015 Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K. Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. Plos One. 10: e0137391. PMID 26382944 DOI: 10.1371/Journal.Pone.0137391  1
2015 Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. Plos Genetics. 11: e1005452. PMID 26379054 DOI: 10.1371/journal.pgen.1005452  1
2015 Liu C, Weigel D. Chromatin in 3D: progress and prospects for plants. Genome Biology. 16: 170. PMID 26294115 DOI: 10.1186/S13059-015-0738-6  1
2015 Kottler VA, Künstner A, Koch I, Flötenmeyer M, Langenecker T, Hoffmann M, Sharma E, Weigel D, Dreyer C. Adenylate cyclase 5 is required for melanophore and male pattern development in the guppy (Poecilia reticulata). Pigment Cell & Melanoma Research. 28: 545-58. PMID 26079969 DOI: 10.1111/Pcmr.12386  1
2015 Busoms S, Teres J, Huang XY, Bomblies K, Danku J, Douglas A, Weigel D, Poschenrieder C, Salt DE. Salinity Is an Agent of Divergent Selection Driving Local Adaptation of Arabidopsis to Coastal Habitats. Plant Physiology. 168: 915-29. PMID 26034264 DOI: 10.1104/Pp.15.00427  1
2015 Lu X, Dittgen J, Piślewska-Bednarek M, Molina A, Schneider B, Svatoš A, Doubský J, Schneeberger K, Weigel D, Bednarek P, Schulze-Lefert P. Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways. Plant Physiology. 168: 814-27. PMID 26023163 DOI: 10.1104/Pp.15.00182  0.72
2015 Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, et al. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. The Plant Journal : For Cell and Molecular Biology. 83: 189-212. PMID 26017574 DOI: 10.1111/Tpj.12886  1
2015 Koenig D, Weigel D. Beyond the thale: comparative genomics and genetics of Arabidopsis relatives. Nature Reviews. Genetics. 16: 285-98. PMID 25854181 DOI: 10.1038/Nrg3883  0.72
2015 Martinho C, Confraria A, Elias CA, Crozet P, Rubio-Somoza I, Weigel D, Baena-González E. Dissection of miRNA pathways using arabidopsis mesophyll protoplasts. Molecular Plant. 8: 261-75. PMID 25680775 DOI: 10.1016/J.Molp.2014.10.003  0.48
2015 Brockington SF, Moyroud E, Sayou C, Monniaux M, Nanao MH, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Dumas R, Parcy F. Evolution. Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". Science (New York, N.Y.). 347: 621. PMID 25657241 DOI: 10.1126/Science.1256011  1
2015 Rowan BA, Patel V, Weigel D, Schneeberger K. Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping. G3 (Bethesda, Md.). 5: 385-98. PMID 25585881 DOI: 10.1534/G3.114.016501  0.72
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. Plos Genetics. 11: e1004920. PMID 25569172 DOI: 10.1371/Journal.Pgen.1004920  1
2015 Smith LM, Burbano HA, Wang X, Fitz J, Wang G, Ural-Blimke Y, Weigel D. Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae. The Plant Journal : For Cell and Molecular Biology. 81: 597-610. PMID 25557441 DOI: 10.1111/Tpj.12754  1
2015 Salomé PA, Weigel D. Plant genetic archaeology: whole-genome sequencing reveals the pedigree of a classical trisomic line. G3 (Bethesda, Md.). 5: 253-9. PMID 25524155 DOI: 10.1534/G3.114.015156  0.64
2015 Fraser BA, Künstner A, Reznick DN, Dreyer C, Weigel D. Population genomics of natural and experimental populations of guppies (Poecilia reticulata). Molecular Ecology. 24: 389-408. PMID 25444454 DOI: 10.1111/Mec.13022  1
2015 Wang C, Liu C, Roqueiro D, Grimm D, Schwab R, Becker C, Lanz C, Weigel D. Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Research. 25: 246-56. PMID 25367294 DOI: 10.1101/Gr.170332.113  1
2015 Geissler K, Eschen-Lippold L, Naumann K, Schneeberger K, Weigel D, Scheel D, Rosahl S, Westphal L. Mutations in the EDR1 Gene Alter the Response of Arabidopsis thaliana to Phytophthora infestans and the Bacterial PAMPs flg22 and elf18. Molecular Plant-Microbe Interactions : Mpmi. 28: 122-33. PMID 25353364 DOI: 10.1094/Mpmi-09-14-0282-R  1
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Epigenetic variation in a nearly isogenic population. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004920.G002  1
2014 Alcázar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, Parker JE. Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature. Plos Genetics. 10: e1004848. PMID 25503786 DOI: 10.1371/Journal.Pgen.1004848  1
2014 Chae E, Bomblies K, Kim ST, Karelina D, Zaidem M, Ossowski S, Martín-Pizarro C, Laitinen RA, Rowan BA, Tenenboim H, Lechner S, Demar M, Habring-Müller A, Lanz C, Rätsch G, ... Weigel D, et al. Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis. Cell. 159: 1341-51. PMID 25467443 DOI: 10.1016/J.Cell.2014.10.049  1
2014 Rubio-Somoza I, Zhou CM, Confraria A, Martinho C, von Born P, Baena-Gonzalez E, Wang JW, Weigel D. Temporal control of leaf complexity by miRNA-regulated licensing of protein complexes. Current Biology : Cb. 24: 2714-9. PMID 25448000 DOI: 10.1016/J.Cub.2014.09.058  0.56
2014 Seymour DK, Koenig D, Hagmann J, Becker C, Weigel D. Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. Plos Genetics. 10: e1004785. PMID 25393550 DOI: 10.1371/Journal.Pgen.1004785  1
2014 Heyndrickx KS, Van de Velde J, Wang C, Weigel D, Vandepoele K. A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. The Plant Cell. 26: 3894-910. PMID 25361952 DOI: 10.1105/Tpc.114.130591  1
2014 Martinho C, Confraria A, Elias CA, Crozet P, Rubio-Somoza I, Weigel D, Baena-González E. Dissection of miRNA pathways using Arabidopsis mesophyll protoplasts. Molecular Plant. PMID 25343984 DOI: 10.1093/mp/ssu119  0.48
2014 Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, ... ... Weigel D, et al. Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life. Cell Host & Microbe. 16: 364-75. PMID 25211078 DOI: 10.1016/J.Chom.2014.08.004  1
2014 Köster T, Meyer K, Weinholdt C, Smith LM, Lummer M, Speth C, Grosse I, Weigel D, Staiger D. Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic Acids Research. 42: 9925-36. PMID 25104024 DOI: 10.1093/Nar/Gku716  1
2014 Lim EC, Müller J, Hagmann J, Henz SR, Kim ST, Weigel D. Trowel: a fast and accurate error correction module for Illumina sequencing reads. Bioinformatics (Oxford, England). 30: 3264-5. PMID 25075116 DOI: 10.1093/Bioinformatics/Btu513  1
2014 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, ... ... Weigel D, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046  1
2014 Agren JÃ…, Wang W, Koenig D, Neuffer B, Weigel D, Wright SI. Mating system shifts and transposable element evolution in the plant genus Capsella. Bmc Genomics. 15: 602. PMID 25030755 DOI: 10.1186/1471-2164-15-602  1
2014 Todesco M, Kim ST, Chae E, Bomblies K, Zaidem M, Smith LM, Weigel D, Laitinen RA. Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. Plos Genetics. 10: e1004459. PMID 25010663 DOI: 10.1371/Journal.Pgen.1004459  1
2014 Dettmer J, Ursache R, Campilho A, Miyashima S, Belevich I, O'Regan S, Mullendore DL, Yadav SR, Lanz C, Beverina L, Papagni A, Schneeberger K, Weigel D, Stierhof YD, Moritz T, et al. CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications. 5: 4276. PMID 25008948 DOI: 10.1038/Ncomms5276  0.76
2014 Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Weigel D, Pontes O, Ecker JR, Chen X. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis Plos Genetics. 10. PMID 24992598 DOI: 10.1371/Journal.Pgen.1004446  1
2014 Sharma E, Künstner A, Fraser BA, Zipprich G, Kottler VA, Henz SR, Weigel D, Dreyer C. Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata Bmc Genomics. 15. PMID 24886435 DOI: 10.1186/1471-2164-15-400  1
2014 Yoshida K, Burbano HA, Krause J, Thines M, Weigel D, Kamoun S. Mining herbaria for plant pathogen genomes: back to the future. Plos Pathogens. 10: e1004028. PMID 24763501 DOI: 10.1371/Journal.Ppat.1004028  0.84
2014 Muralidharan S, Box MS, Sedivy EL, Wigge PA, Weigel D, Rowan BA. Different mechanisms for Arabidopsis thaliana hybrid necrosis cases inferred from temperature responses. Plant Biology (Stuttgart, Germany). 16: 1033-41. PMID 24641593 DOI: 10.1111/Plb.12164  1
2014 Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiology. 165: 175-85. PMID 24623850 DOI: 10.1104/Pp.113.233213  1
2014 Ho WW, Weigel D. Structural features determining flower-promoting activity of Arabidopsis FLOWERING LOCUS T. The Plant Cell. 26: 552-64. PMID 24532592 DOI: 10.1105/Tpc.113.115220  0.8
2014 Kottler VA, Koch I, Flötenmeyer M, Hashimoto H, Weigel D, Dreyer C. Multiple pigment cell types contribute to the black, blue, and orange ornaments of male guppies (Poecilia reticulata). Plos One. 9: e85647. PMID 24465632 DOI: 10.1371/Journal.Pone.0085647  0.44
2014 Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Parcy F, Dumas R. A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science (New York, N.Y.). 343: 645-8. PMID 24436181 DOI: 10.1126/Science.1248229  1
2013 Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, et al. The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. Elife. 2: e01426. PMID 24347547 DOI: 10.7554/Elife.01426  1
2013 Merelo P, Xie Y, Brand L, Ott F, Weigel D, Bowman JL, Heisler MG, Wenkel S. Genome-wide identification of KANADI1 target genes. Plos One. 8: e77341. PMID 24155946 DOI: 10.1371/Journal.Pone.0077341  1
2013 Nekrasov V, Staskawicz B, Weigel D, Jones JD, Kamoun S. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nature Biotechnology. 31: 691-3. PMID 23929340 DOI: 10.1038/Nbt.2655  1
2013 Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ. LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proceedings of the National Academy of Sciences of the United States of America. 110: 12120-5. PMID 23818596 DOI: 10.1073/Pnas.1302170110  0.64
2013 Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, ... ... Weigel D, et al. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America. 110: E2655-62. PMID 23803858 DOI: 10.1073/Pnas.1309606110  1
2013 James GV, Patel V, Nordström KJ, Klasen JR, Salomé PA, Weigel D, Schneeberger K. User guide for mapping-by-sequencing in Arabidopsis. Genome Biology. 14: R61. PMID 23773572 DOI: 10.1186/Gb-2013-14-6-R61  1
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Weigel D, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  1
2013 Yoshida K, Schuenemann VJ, Cano LM, Pais M, Mishra B, Sharma R, Lanz C, Martin FN, Kamoun S, Krause J, Thines M, Weigel D, Burbano HA. The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. Elife. 2: e00731. PMID 23741619 DOI: 10.7554/Elife.00731  0.84
2013 Kottler VA, Fadeev A, Weigel D, Dreyer C. Pigment pattern formation in the guppy, Poecilia reticulata, involves the Kita and Csf1ra receptor tyrosine kinases. Genetics. 194: 631-46. PMID 23666934 DOI: 10.1534/Genetics.113.151738  0.44
2013 Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/Gb-2013-14-4-113  1
2013 Rubio-Somoza I, Weigel D. Coordination of flower maturation by a regulatory circuit of three microRNAs. Plos Genetics. 9: e1003374. PMID 23555288 DOI: 10.1371/Journal.Pgen.1003374  0.48
2013 Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K. Accurate indel prediction using paired-end short reads. Bmc Genomics. 14: 132. PMID 23442375 DOI: 10.1186/1471-2164-14-132  1
2013 Wang X, Weigel D, Smith LM. Transposon variants and their effects on gene expression in Arabidopsis. Plos Genetics. 9: e1003255. PMID 23408902 DOI: 10.1371/Journal.Pgen.1003255  0.96
2013 Salomé PA, Oliva M, Weigel D, Krämer U. Circadian clock adjustment to plant iron status depends on chloroplast and phytochrome function. The Embo Journal. 32: 511-23. PMID 23241948 DOI: 10.1038/Emboj.2012.330  0.64
2013 Manavella PA, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, Weigel D. Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. Plant Physiology. 161: 805-12. PMID 23204429 DOI: 10.1104/Pp.112.207068  1
2013 Warthmann N, Ossowski S, Schwab R, Weigel D. Artificial microRNAs for specific gene silencing in rice. Methods in Molecular Biology (Clifton, N.J.). 956: 131-49. PMID 23135850 DOI: 10.1007/978-1-62703-194-3_11  1
2013 Rosloski SM, Singh A, Jali SS, Balasubramanian S, Weigel D, Grbic V. Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana. Plant Molecular Biology. 81: 57-69. PMID 23111501 DOI: 10.1007/S11103-012-9982-2  0.96
2013 Kopischke M, Westphal L, Schneeberger K, Clark R, Ossowski S, Wewer V, Fuchs R, Landtag J, Hause G, Dörmann P, Lipka V, Weigel D, Schulze-Lefert P, Scheel D, Rosahl S. Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal : For Cell and Molecular Biology. 73: 456-68. PMID 23072470 DOI: 10.1111/Tpj.12046  1
2013 Wijnker E, James GV, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, Jong DFd, Snoo CBd, Zapata L, Huettel B, Jong Hd, Ossowski S, Weigel D, Koornneef M, et al. Author response: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana Elife. DOI: 10.7554/Elife.01426.020  0.72
2012 Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, Macek B, Weigel D. Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell. 151: 859-70. PMID 23141542 DOI: 10.1016/J.Cell.2012.09.039  0.72
2012 Becker C, Weigel D. Epigenetic variation: origin and transgenerational inheritance. Current Opinion in Plant Biology. 15: 562-7. PMID 22939250 DOI: 10.1016/J.Pbi.2012.08.004  1
2012 Guo YL, Todesco M, Hagmann J, Das S, Weigel D. Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella. Genetics. 192: 729-39. PMID 22865739 DOI: 10.1534/Genetics.112.143958  0.76
2012 Giacomelli JI, Weigel D, Chan RL, Manavella PA. Role of recently evolved miRNA regulation of sunflower HaWRKY6 in response to temperature damage. The New Phytologist. 195: 766-73. PMID 22846054 DOI: 10.1111/J.1469-8137.2012.04259.X  1
2012 Rutter MT, Roles A, Conner JK, Shaw RG, Shaw FH, Schneeberger K, Ossowski S, Weigel D, Fenster CB. Fitness of Arabidopsis thaliana mutation accumulation lines whose spontaneous mutations are known. Evolution; International Journal of Organic Evolution. 66: 2335-9. PMID 22759306 DOI: 10.1111/J.1558-5646.2012.01583.X  1
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  1
2012 Joshi HJ, Christiansen KM, Fitz J, Cao J, Lipzen A, Martin J, Smith-Moritz AM, Pennacchio LA, Schackwitz WS, Weigel D, Heazlewood JL. 1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions. Bioinformatics (Oxford, England). 28: 1303-6. PMID 22451271 DOI: 10.1093/Bioinformatics/Bts133  1
2012 Galvão VC, Nordström KJ, Lanz C, Sulz P, Mathieu J, Posé D, Schmid M, Weigel D, Schneeberger K. Synteny-based mapping-by-sequencing enabled by targeted enrichment. The Plant Journal : For Cell and Molecular Biology. 71: 517-26. PMID 22409706 DOI: 10.1111/J.1365-313X.2012.04993.X  1
2012 Manavella PA, Koenig D, Weigel D. Plant secondary siRNA production determined by microRNA-duplex structure. Proceedings of the National Academy of Sciences of the United States of America. 109: 2461-6. PMID 22308502 DOI: 10.1073/Pnas.1200169109  0.72
2012 Felippes FF, Wang JW, Weigel D. MIGS: miRNA-induced gene silencing. The Plant Journal : For Cell and Molecular Biology. 70: 541-7. PMID 22211571 DOI: 10.1111/J.1365-313X.2011.04896.X  0.56
2012 Todesco M, Balasubramanian S, Cao J, Ott F, Sureshkumar S, Schneeberger K, Meyer RC, Altmann T, Weigel D. Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Current Biology : Cb. 22: 166-70. PMID 22206705 DOI: 10.1016/J.Cub.2011.11.060  1
2012 Smith LM, Weigel D. On epigenetics and epistasis: hybrids and their non-additive interactions. The Embo Journal. 31: 249-50. PMID 22193717 DOI: 10.1038/Emboj.2011.473  0.96
2012 Salomé PA, Bomblies K, Fitz J, Laitinen RA, Warthmann N, Yant L, Weigel D. The recombination landscape in Arabidopsis thaliana F2 populations. Heredity. 108: 447-55. PMID 22072068 DOI: 10.1038/Hdy.2011.95  1
2012 Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN. High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Research. 22: 163-76. PMID 21940835 DOI: 10.1101/Gr.123547.111  0.92
2011 Rubio-Somoza I, Weigel D, Franco-Zorilla JM, García JA, Paz-Ares J. ceRNAs: miRNA target mimic mimics. Cell. 147: 1431-2. PMID 22196719 DOI: 10.1016/J.Cell.2011.12.003  0.48
2011 Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature. 480: 245-9. PMID 22057020 DOI: 10.1038/Nature10555  1
2011 Davila JI, Arrieta-Montiel MP, Wamboldt Y, Cao J, Hagmann J, Shedge V, Xu YZ, Weigel D, Mackenzie SA. Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. Bmc Biology. 9: 64. PMID 21951689 DOI: 10.1186/1741-7007-9-64  0.6
2011 Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, ... ... Weigel D, et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics. 43: 956-63. PMID 21874002 DOI: 10.1038/Ng.911  0.92
2011 Klein JD, Ossowski S, Schneeberger K, Weigel D, Huson DH. LOCAS--a low coverage assembly tool for resequencing projects. Plos One. 6: e23455. PMID 21858125 DOI: 10.1371/Journal.Pone.0023455  0.72
2011 Guo YL, Fitz J, Schneeberger K, Ossowski S, Cao J, Weigel D. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiology. 157: 757-69. PMID 21810963 DOI: 10.1104/Pp.111.181990  0.76
2011 Guo YL, Zhao X, Lanz C, Weigel D. Evolution of the S-locus region in Arabidopsis relatives. Plant Physiology. 157: 937-46. PMID 21810962 DOI: 10.1104/Pp.111.174912  0.76
2011 Smith LM, Bomblies K, Weigel D. Complex evolutionary events at a tandem cluster of Arabidopsis thaliana genes resulting in a single-locus genetic incompatibility. Plos Genetics. 7: e1002164. PMID 21779175 DOI: 10.1371/Journal.Pgen.1002164  1
2011 Rowan BA, Weigel D, Koenig D. Developmental genetics and new sequencing technologies: the rise of nonmodel organisms. Developmental Cell. 21: 65-76. PMID 21763609 DOI: 10.1016/J.Devcel.2011.05.021  0.72
2011 Willing EM, Hoffmann M, Klein JD, Weigel D, Dreyer C. Paired-end RAD-seq for de novo assembly and marker design without available reference. Bioinformatics (Oxford, England). 27: 2187-93. PMID 21712251 DOI: 10.1093/Bioinformatics/Btr346  0.44
2011 Schneeberger K, Ossowski S, Ott F, Klein JD, Wang X, Lanz C, Smith LM, Cao J, Fitz J, Warthmann N, Henz SR, Huson DH, Weigel D. Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America. 108: 10249-54. PMID 21646520 DOI: 10.1073/Pnas.1107739108  0.96
2011 Sonmez C, Bäurle I, Magusin A, Dreos R, Laubinger S, Weigel D, Dean C. RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences of the United States of America. 108: 8508-13. PMID 21536901 DOI: 10.1073/Pnas.1105334108  0.68
2011 Moyroud E, Minguet EG, Ott F, Yant L, Posé D, Monniaux M, Blanchet S, Bastien O, Thévenon E, Weigel D, Schmid M, Parcy F. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. The Plant Cell. 23: 1293-306. PMID 21515819 DOI: 10.1105/Tpc.111.083329  1
2011 Manavella PA, Weigel D, Wu L. Argonaute10 as a miRNA locker. Cell. 145: 173-4. PMID 21496638 DOI: 10.1016/J.Cell.2011.03.045  0.72
2011 Gou JY, Felippes FF, Liu CJ, Weigel D, Wang JW. Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. The Plant Cell. 23: 1512-22. PMID 21487097 DOI: 10.1105/Tpc.111.084525  0.56
2011 Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, ... ... Weigel D, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 43: 476-81. PMID 21478890 DOI: 10.1038/Ng.807  1
2011 Rubio-Somoza I, Weigel D. MicroRNA networks and developmental plasticity in plants. Trends in Plant Science. 16: 258-64. PMID 21466971 DOI: 10.1016/J.Tplants.2011.03.001  0.48
2011 Schneeberger K, Weigel D. Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science. 16: 282-8. PMID 21439889 DOI: 10.1016/J.Tplants.2011.02.006  0.72
2011 Salomé PA, Bomblies K, Laitinen RA, Yant L, Mott R, Weigel D. Genetic architecture of flowering-time variation in Arabidopsis thaliana. Genetics. 188: 421-33. PMID 21406681 DOI: 10.1534/Genetics.111.126607  1
2011 Wang JW, Park MY, Wang LJ, Koo Y, Chen XY, Weigel D, Poethig RS. miRNA control of vegetative phase change in trees. Plos Genetics. 7: e1002012. PMID 21383862 DOI: 10.1371/Journal.Pgen.1002012  0.56
2011 Gorman KF, Christians JK, Parent J, Ahmadi R, Weigel D, Dreyer C, Breden F. A major QTL controls susceptibility to spinal curvature in the curveback guppy. Bmc Genetics. 12: 16. PMID 21269476 DOI: 10.1186/1471-2156-12-16  1
2011 Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proceedings of the National Academy of Sciences of the United States of America. 108: 2322-7. PMID 21252301 DOI: 10.1073/Pnas.1018222108  1
2011 Watson CT, Gray SM, Hoffmann M, Lubieniecki KP, Joy JB, Sandkam BA, Weigel D, Loew E, Dreyer C, Davidson WS, Breden F. Gene duplication and divergence of long wavelength-sensitive opsin genes in the guppy, Poecilia reticulata. Journal of Molecular Evolution. 72: 240-52. PMID 21170644 DOI: 10.1007/S00239-010-9426-Z  1
2011 de Felippes FF, Ott F, Weigel D. Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana. Nucleic Acids Research. 39: 2880-9. PMID 21134910 DOI: 10.1093/Nar/Gkq1240  1
2011 Grimm DG, Hagmann J, Koenig D, Weigel D, Borgwardt K. Support vector machines for finding deletions and short insertions using paired-end short reads F1000research. 2. DOI: 10.7490/F1000Research.2126.1  0.72
2010 Wollmann H, Mica E, Todesco M, Long JA, Weigel D. On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development (Cambridge, England). 137: 3633-42. PMID 20876650 DOI: 10.1242/Dev.036673  1
2010 Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D. Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 107: 17466-73. PMID 20870966 DOI: 10.1073/Pnas.1012891107  1
2010 Heard E, Tishkoff S, Todd JA, Vidal M, Wagner GP, Wang J, Weigel D, Young R. Ten years of genetics and genomics: what have we achieved and where are we heading? Nature Reviews. Genetics. 11: 723-33. PMID 20820184 DOI: 10.1038/Nrg2878  1
2010 Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D. A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. Plos Genetics. 6: e1001031. PMID 20661442 DOI: 10.1371/Journal.Pgen.1001031  0.64
2010 Rosloski SM, Jali SS, Balasubramanian S, Weigel D, Grbic V. Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics. 186: 263-76. PMID 20551443 DOI: 10.1534/Genetics.110.116392  0.96
2010 Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, ... ... Weigel D, et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465: 632-6. PMID 20520716 DOI: 10.1038/Nature09083  1
2010 Gonzalez N, De Bodt S, Sulpice R, Jikumaru Y, Chae E, Dhondt S, Van Daele T, De Milde L, Weigel D, Kamiya Y, Stitt M, Beemster GT, Inzé D. Increased leaf size: different means to an end. Plant Physiology. 153: 1261-79. PMID 20460583 DOI: 10.1104/Pp.110.156018  1
2010 Bomblies K, Weigel D. Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1815-23. PMID 20439283 DOI: 10.1098/Rstb.2009.0304  1
2010 Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. The Plant Cell. 22: 1074-89. PMID 20407027 DOI: 10.1105/Tpc.110.073999  1
2010 Laitinen RA, Schneeberger K, Jelly NS, Ossowski S, Weigel D. Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiology. 153: 652-4. PMID 20388671 DOI: 10.1104/Pp.110.156448  0.72
2010 Bomblies K, Yant L, Laitinen RA, Kim ST, Hollister JD, Warthmann N, Fitz J, Weigel D. Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. Plos Genetics. 6: e1000890. PMID 20361058 DOI: 10.1371/Journal.Pgen.1000890  1
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Weigel D, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  1
2010 Tautz D, Ellegren H, Weigel D. Next generation molecular ecology. Molecular Ecology. 19: 1-3. PMID 20331765 DOI: 10.1111/J.1365-294X.2009.04489.X  1
2010 Koo SC, Bracko O, Park MS, Schwab R, Chun HJ, Park KM, Seo JS, Grbic V, Balasubramanian S, Schmid M, Godard F, Yun DJ, Lee SY, Cho MJ, Weigel D, et al. Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6. The Plant Journal : For Cell and Molecular Biology. 62: 807-16. PMID 20230491 DOI: 10.1111/J.1365-313X.2010.04192.X  1
2010 Massonnet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, ... ... Weigel D, et al. Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiology. 152: 2142-57. PMID 20200072 DOI: 10.1104/Pp.109.148338  1
2010 Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, ... ... Weigel D, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/Journal.Pgen.1000843  1
2010 Willing EM, Bentzen P, van Oosterhout C, Hoffmann M, Cable J, Breden F, Weigel D, Dreyer C. Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology. 19: 968-84. PMID 20149094 DOI: 10.1111/J.1365-294X.2010.04528.X  1
2010 Skylar A, Hong F, Chory J, Weigel D, Wu X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. Development (Cambridge, England). 137: 541-9. PMID 20110319 DOI: 10.1242/Dev.041426  0.84
2010 Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W. Transcriptional control of gene expression by microRNAs. Cell. 140: 111-22. PMID 20085706 DOI: 10.1016/J.Cell.2009.12.023  0.72
2010 Ossowski S, Schneeberger K, Lucas-Lledó JI, Warthmann N, Clark RM, Shaw RG, Weigel D, Lynch M. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science (New York, N.Y.). 327: 92-4. PMID 20044577 DOI: 10.1126/Science.1180677  1
2010 Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiology. 152: 487-99. PMID 20032078 DOI: 10.1104/Pp.109.150185  1
2010 Wollmann H, Weigel D. Small RNAs in flower development. European Journal of Cell Biology. 89: 250-7. PMID 20031253 DOI: 10.1016/J.Ejcb.2009.11.004  0.48
2010 Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D, Palatnik JF. Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development (Cambridge, England). 137: 103-12. PMID 20023165 DOI: 10.1242/Dev.043067  1
2010 Werner S, Wollmann H, Schneeberger K, Weigel D. Structure determinants for accurate processing of miR172a in Arabidopsis thaliana. Current Biology : Cb. 20: 42-8. PMID 20015654 DOI: 10.1016/J.Cub.2009.10.073  0.72
2010 de Felippes FF, Weigel D. Transient assays for the analysis of miRNA processing and function. Methods in Molecular Biology (Clifton, N.J.). 592: 255-64. PMID 19802601 DOI: 10.1007/978-1-60327-005-2_17  1
2010 Schwab R, Ossowski S, Warthmann N, Weigel D. Directed gene silencing with artificial microRNAs. Methods in Molecular Biology (Clifton, N.J.). 592: 71-88. PMID 19802590 DOI: 10.1007/978-1-60327-005-2_6  0.76
2010 Lippert C, Stegle O, Nickisch H, Borgwardt K, Weigel D. Experimental design for genome-wide association studies F1000research. 1. DOI: 10.7490/F1000Research.324.1  0.6
2010 Nordborg M, Weigel D. Evolutionary and Population Genetics of Plants Annual Review of Genetics. 45: 110301100158074. DOI: 10.1146/Annurev-Genet-110410-132449  1
2009 Out AA, van Minderhout IJ, Goeman JJ, Ariyurek Y, Ossowski S, Schneeberger K, Weigel D, van Galen M, Taschner PE, Tops CM, Breuning MH, van Ommen GJ, den Dunnen JT, Devilee P, Hes FJ. Deep sequencing to reveal new variants in pooled DNA samples. Human Mutation. 30: 1703-12. PMID 19842214 DOI: 10.1002/Humu.21122  1
2009 Schneeberger K, Hagmann J, Ossowski S, Warthmann N, Gesing S, Kohlbacher O, Weigel D. Simultaneous alignment of short reads against multiple genomes. Genome Biology. 10: R98. PMID 19761611 DOI: 10.1186/Gb-2009-10-9-R98  0.76
2009 Mirouze M, Reinders J, Bucher E, Nishimura T, Schneeberger K, Ossowski S, Cao J, Weigel D, Paszkowski J, Mathieu O. Selective epigenetic control of retrotransposition in Arabidopsis. Nature. 461: 427-30. PMID 19734882 DOI: 10.1038/Nature08328  1
2009 Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell. 138: 750-9. PMID 19703400 DOI: 10.1016/J.Cell.2009.06.031  1
2009 Wang JW, Czech B, Weigel D. miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell. 138: 738-49. PMID 19703399 DOI: 10.1016/J.Cell.2009.06.014  0.56
2009 Rubio-Somoza I, Cuperus JT, Weigel D, Carrington JC. Regulation and functional specialization of small RNA-target nodes during plant development. Current Opinion in Plant Biology. 12: 622-7. PMID 19699140 DOI: 10.1016/J.Pbi.2009.07.003  1
2009 Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 183: 723-32, 1SI-7SI. PMID 19652183 DOI: 10.1534/Genetics.109.104984  1
2009 Schneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, Jørgensen JE, Weigel D, Andersen SU. SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nature Methods. 6: 550-1. PMID 19644454 DOI: 10.1038/Nmeth0809-550  0.76
2009 McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, ... ... Weigel D, et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 12273-8. PMID 19597147 DOI: 10.1073/Pnas.0900992106  1
2009 Weigel D, Mott R. The 1001 genomes project for Arabidopsis thaliana. Genome Biology. 10: 107. PMID 19519932 DOI: 10.1186/Gb-2009-10-5-107  1
2009 Trigueros M, Navarrete-Gómez M, Sato S, Christensen SK, Pelaz S, Weigel D, Yanofsky MF, Ferrándiz C. The NGATHA genes direct style development in the Arabidopsis gynoecium. The Plant Cell. 21: 1394-409. PMID 19435937 DOI: 10.1105/Tpc.109.065508  0.96
2009 Maier AT, Stehling-Sun S, Wollmann H, Demar M, Hong RL, Haubeiss S, Weigel D, Lohmann JU. Dual roles of the bZIP transcription factor PERIANTHIA in the control of floral architecture and homeotic gene expression. Development (Cambridge, England). 136: 1613-20. PMID 19395639 DOI: 10.1242/Dev.033647  1
2009 Tripathi N, Hoffmann M, Willing EM, Lanz C, Weigel D, Dreyer C. Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings. Biological Sciences / the Royal Society. 276: 2195-208. PMID 19324769 DOI: 10.1098/Rspb.2008.1930  0.76
2009 Guo YL, Bechsgaard JS, Slotte T, Neuffer B, Lascoux M, Weigel D, Schierup MH. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the United States of America. 106: 5246-51. PMID 19307580 DOI: 10.1073/Pnas.0808012106  0.6
2009 Tripathi N, Hoffmann M, Weigel D, Dreyer C. Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata). Genetics. 182: 365-74. PMID 19299341 DOI: 10.1534/Genetics.108.098541  0.44
2009 Plantegenet S, Weber J, Goldstein DR, Zeller G, Nussbaumer C, Thomas J, Weigel D, Harshman K, Hardtke CS. Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Molecular Systems Biology. 5: 242. PMID 19225455 DOI: 10.1038/Msb.2008.79  1
2009 Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. The Plant Journal : For Cell and Molecular Biology. 58: 1068-82. PMID 19222804 DOI: 10.1111/J.1365-313X.2009.03835.X  1
2009 Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. Plos One. 4: e4318. PMID 19183806 DOI: 10.1371/Journal.Pone.0004318  1
2009 Felippes FF, Weigel D. Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. Embo Reports. 10: 264-70. PMID 19180117 DOI: 10.1038/Embor.2008.247  0.32
2009 Sureshkumar S, Todesco M, Schneeberger K, Harilal R, Balasubramanian S, Weigel D. A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science (New York, N.Y.). 323: 1060-3. PMID 19150812 DOI: 10.1126/Science.1164014  0.96
2009 Molnar A, Bassett A, Thuenemann E, Schwach F, Karkare S, Ossowski S, Weigel D, Baulcombe D. Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. The Plant Journal : For Cell and Molecular Biology. 58: 165-74. PMID 19054357 DOI: 10.1111/J.1365-313X.2008.03767.X  0.48
2009 Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal : For Cell and Molecular Biology. 57: 184-94. PMID 18764924 DOI: 10.1111/J.1365-313X.2008.03662.X  1
2008 Nordborg M, Weigel D. Next-generation genetics in plants. Nature. 456: 720-3. PMID 19079047 DOI: 10.1038/Nature07629  1
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, ... ... Weigel D, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  0.84
2008 Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 17193-8. PMID 18971337 DOI: 10.1073/Pnas.0807264105  0.84
2008 Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D. Evolution of Arabidopsis thaliana microRNAs from random sequences. Rna (New York, N.Y.). 14: 2455-9. PMID 18952822 DOI: 10.1261/Rna.1149408  0.72
2008 Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Research. 18: 2024-33. PMID 18818371 DOI: 10.1101/Gr.080200.108  0.76
2008 Khraiwesh B, Ossowski S, Weigel D, Reski R, Frank W. Specific gene silencing by artificial MicroRNAs in Physcomitrella patens: an alternative to targeted gene knockouts. Plant Physiology. 148: 684-93. PMID 18753280 DOI: 10.1104/Pp.108.128025  0.72
2008 Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D. At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biology. 9: R112. PMID 18613972 DOI: 10.1186/Gb-2008-9-7-R112  1
2008 Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 133: 939-43. PMID 18555767 DOI: 10.1016/J.Cell.2008.05.040  1
2008 Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 8795-800. PMID 18550839 DOI: 10.1073/Pnas.0802493105  1
2008 Hanikenne M, Talke IN, Haydon MJ, Lanz C, Nolte A, Motte P, Kroymann J, Weigel D, Krämer U. Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature. 453: 391-5. PMID 18425111 DOI: 10.1038/Nature06877  1
2008 Warthmann N, Chen H, Ossowski S, Weigel D, Hervé P. Highly specific gene silencing by artificial miRNAs in rice. Plos One. 3: e1829. PMID 18350165 DOI: 10.1371/Journal.Pone.0001829  0.76
2008 Zeller G, Clark RM, Schneeberger K, Bohlen A, Weigel D, Rätsch G. Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Research. 18: 918-29. PMID 18323538 DOI: 10.1101/Gr.070169.107  1
2008 Warthmann N, Das S, Lanz C, Weigel D. Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Molecular Biology and Evolution. 25: 892-902. PMID 18296705 DOI: 10.1093/Molbev/Msn029  0.76
2008 Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proceedings of the National Academy of Sciences of the United States of America. 105: 3157-62. PMID 18287016 DOI: 10.1073/Pnas.0712174105  1
2008 Ossowski S, Schwab R, Weigel D. Gene silencing in plants using artificial microRNAs and other small RNAs. The Plant Journal : For Cell and Molecular Biology. 53: 674-90. PMID 18269576 DOI: 10.1111/J.1365-313X.2007.03328.X  0.72
2008 Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G. Transcript normalization and segmentation of tiling array data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 527-38. PMID 18229713  1
2007 Bomblies K, Weigel D. Arabidopsis: a model genus for speciation. Current Opinion in Genetics & Development. 17: 500-4. PMID 18006296 DOI: 10.1016/J.Gde.2007.09.006  1
2007 Weigel D, Dangl JL. 10 years of Current Opinion in Plant Biology 1997-2007 Current Opinion in Plant Biology. 10: 543-545. PMID 17977782 DOI: 10.1016/J.Pbi.2007.10.001  1
2007 Michniewicz M, Zago MK, Abas L, Weijers D, Schweighofer A, Meskiene I, Heisler MG, Ohno C, Zhang J, Huang F, Schwab R, Weigel D, Meyerowitz EM, Luschnig C, Offringa R, et al. Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell. 130: 1044-56. PMID 17889649 DOI: 10.1016/J.Cell.2007.07.033  1
2007 Bomblies K, Lempe J, Epple P, Warthmann N, Lanz C, Dangl JL, Weigel D. Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. Plos Biology. 5: e236. PMID 17803357 DOI: 10.1371/Journal.Pbio.0050236  1
2007 Wang Q, Sajja U, Rosloski S, Humphrey T, Kim MC, Bomblies K, Weigel D, Grbic V. HUA2 caused natural variation in shoot morphology of A. thaliana. Current Biology : Cb. 17: 1513-9. PMID 17764945 DOI: 10.1016/J.Cub.2007.07.059  1
2007 Wu X, Chory J, Weigel D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Developmental Biology. 309: 306-16. PMID 17706632 DOI: 10.1016/J.Ydbio.2007.07.019  0.84
2007 Dreyer C, Hoffmann M, Lanz C, Willing EM, Riester M, Warthmann N, Sprecher A, Tripathi N, Henz SR, Weigel D. ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata. Bmc Genomics. 8: 269. PMID 17686157 DOI: 10.1186/1471-2164-8-269  0.76
2007 Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M. Recombination and linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 39: 1151-5. PMID 17676040 DOI: 10.1038/Ng2115  1
2007 Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, Hu TT, Clark RM, Nasrallah JB, Weigel D, Nordborg M. The evolution of selfing in Arabidopsis thaliana. Science (New York, N.Y.). 317: 1070-2. PMID 17656687 DOI: 10.1126/Science.1143153  1
2007 Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, García JA, Paz-Ares J. Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics. 39: 1033-7. PMID 17643101 DOI: 10.1038/Ng2079  0.64
2007 Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, ... ... Weigel D, et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (New York, N.Y.). 317: 338-42. PMID 17641193 DOI: 10.1126/Science.1138632  1
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  1
2007 Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D. Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Developmental Cell. 13: 115-25. PMID 17609114 DOI: 10.1016/J.Devcel.2007.04.012  0.76
2007 Henz SR, Cumbie JS, Kasschau KD, Lohmann JU, Carrington JC, Weigel D, Schmid M. Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiology. 144: 1247-55. PMID 17496106 DOI: 10.1104/Pp.107.100396  1
2007 Bomblies K, Weigel D. Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nature Reviews. Genetics. 8: 382-93. PMID 17404584 DOI: 10.1038/Nrg2082  1
2007 Hoffmann M, Tripathi N, Henz SR, Lindholm AK, Weigel D, Breden F, Dreyer C. Opsin gene duplication and diversification in the guppy, a model for sexual selection. Proceedings. Biological Sciences / the Royal Society. 274: 33-42. PMID 17015333 DOI: 10.1098/Rspb.2006.3707  1
2006 Balasubramanian S, Weigel D. Temperature Induced Flowering in Arabidopsis thaliana. Plant Signaling & Behavior. 1: 227-8. PMID 19704664 DOI: 10.4161/Psb.1.5.3452  0.96
2006 Sliwinski MK, White MA, Maizel A, Weigel D, Baum DA. Evolutionary divergence of LFY function in the mustards Arabidopsis thaliana and Leavenworthia crassa. Plant Molecular Biology. 62: 279-89. PMID 16915521 DOI: 10.1007/S11103-006-9020-3  1
2006 Balasubramanian S, Sureshkumar S, Lempe J, Weigel D. Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. Plos Genetics. 2: e106. PMID 16839183 DOI: 10.1371/Journal.Pgen.0020106  0.96
2006 Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics. 38: 711-5. PMID 16732287 DOI: 10.1038/Ng1818  0.96
2006 Weigel D, Izaurralde E. A tiny helper lightens the maternal load. Cell. 124: 1117-8. PMID 16564001 DOI: 10.1016/J.Cell.2006.03.005  1
2006 Dinneny JR, Weigel D, Yanofsky MF. NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development (Cambridge, England). 133: 1645-55. PMID 16554365 DOI: 10.1242/Dev.02335  0.96
2006 Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D. Highly specific gene silencing by artificial microRNAs in Arabidopsis. The Plant Cell. 18: 1121-33. PMID 16531494 DOI: 10.1105/Tpc.105.039834  0.76
2006 Ahn JH, Miller D, Winter VJ, Banfield MJ, Lee JH, Yoo SY, Henz SR, Brady RL, Weigel D. A divergent external loop confers antagonistic activity on floral regulators FT and TFL1. The Embo Journal. 25: 605-14. PMID 16424903 DOI: 10.1038/Sj.Emboj.7600950  0.8
2005 Lee JH, Cho YS, Yoon HS, Suh MC, Moon J, Lee I, Weigel D, Yun CH, Kim JK. Conservation and divergence of FCA function between Arabidopsis and rice. Plant Molecular Biology. 58: 823-38. PMID 16240176 DOI: 10.1007/S11103-005-8105-8  0.84
2005 Dinneny JR, Weigel D, Yanofsky MF. A genetic framework for fruit patterning in Arabidopsis thaliana. Development (Cambridge, England). 132: 4687-96. PMID 16192305 DOI: 10.1242/Dev.02062  0.96
2005 Lempe J, Balasubramanian S, Sureshkumar S, Singh A, Schmid M, Weigel D. Diversity of flowering responses in wild Arabidopsis thaliana strains. Plos Genetics. 1: 109-18. PMID 16103920 DOI: 10.1371/Journal.Pgen.0010006  0.96
2005 Wigge PA, Kim MC, Jaeger KE, Busch W, Schmid M, Lohmann JU, Weigel D. Integration of spatial and temporal information during floral induction in Arabidopsis. Science (New York, N.Y.). 309: 1056-9. PMID 16099980 DOI: 10.1126/Science.1114358  1
2005 Weigel D, Nordborg M. Natural variation in Arabidopsis. How do we find the causal genes? Plant Physiology. 138: 567-8. PMID 15955918 DOI: 10.1104/Pp.104.900157  1
2005 Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 170: 1197-207. PMID 15911588 DOI: 10.1534/Genetics.104.036533  1
2005 Maizel A, Busch MA, Tanahashi T, Perkovic J, Kato M, Hasebe M, Weigel D. The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science (New York, N.Y.). 308: 260-3. PMID 15821093 DOI: 10.1126/Science.1108229  1
2005 Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. A gene expression map of Arabidopsis thaliana development. Nature Genetics. 37: 501-6. PMID 15806101 DOI: 10.1038/Ng1543  1
2005 Weigel D, Jürgens G. Genetics: hotheaded healer. Nature. 434: 443. PMID 15791234 DOI: 10.1038/434443A  0.36
2005 Wu X, Dabi T, Weigel D. Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance. Current Biology : Cb. 15: 436-40. PMID 15753038 DOI: 10.1016/J.Cub.2004.12.079  0.6
2005 Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America. 102: 2460-5. PMID 15695584 DOI: 10.1073/Pnas.0409474102  1
2005 Yoo SY, Bomblies K, Yoo SK, Yang JW, Choi MS, Lee JS, Weigel D, Ahn JH. The 35S promoter used in a selectable marker gene of a plant transformation vector affects the expression of the transgene. Planta. 221: 523-30. PMID 15682278 DOI: 10.1007/S00425-004-1466-4  1
2004 Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470  1
2004 Yoo SY, Kardailsky I, Lee JS, Weigel D, Ahn JH. Acceleration of flowering by overexpression of MFT (MOTHER OF FT AND TFL1). Molecules and Cells. 17: 95-101. PMID 15055534  0.8
2004 Maizel A, Weigel D. Temporally and spatially controlled induction of gene expression in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 38: 164-71. PMID 15053769 DOI: 10.1111/J.1365-313X.2004.02027.X  1
2004 Lohmann JU, Weigel D. From tough nuts to touch-me-nots. Cell. 116: 763-4. PMID 15035977 DOI: 10.1016/S0092-8674(04)00254-5  1
2004 Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. The role of JAGGED in shaping lateral organs. Development (Cambridge, England). 131: 1101-10. PMID 14973282 DOI: 10.1242/Dev.00949  1
2003 Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, Weigel D, Lohmann JU. Dissection of floral induction pathways using global expression analysis. Development (Cambridge, England). 130: 6001-12. PMID 14573523 DOI: 10.1242/Dev.00842  1
2003 Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D. Control of leaf morphogenesis by microRNAs. Nature. 425: 257-63. PMID 12931144 DOI: 10.1038/Nature01958  1
2003 Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, ... ... Weigel D, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (New York, N.Y.). 301: 653-7. PMID 12893945 DOI: 10.1126/Science.1086391  1
2003 Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D. Modes of intercellular transcription factor movement in the Arabidopsis apex. Development (Cambridge, England). 130: 3735-45. PMID 12835390 DOI: 10.1242/Dev.00577  1
2003 Durfee T, Roe JL, Sessions RA, Inouye C, Serikawa K, Feldmann KA, Weigel D, Zambryski PC. The F-box-containing protein UFO and AGAMOUS participate in antagonistic pathways governing early petal development in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 8571-6. PMID 12826617 DOI: 10.1073/Pnas.1033043100  1
2003 Hong RL, Hamaguchi L, Busch MA, Weigel D. Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing. The Plant Cell. 15: 1296-309. PMID 12782724 DOI: 10.1105/Tpc.009548  0.68
2003 Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research. 13: 513-23. PMID 12618383 DOI: 10.1101/Gr.541303  1
2003 Blázquez MA, Ahn JH, Weigel D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nature Genetics. 33: 168-71. PMID 12548286 DOI: 10.1038/Ng1085  0.84
2002 Blázquez MA, Trénor M, Weigel D. Independent control of gibberellin biosynthesis and flowering time by the circadian clock in Arabidopsis. Plant Physiology. 130: 1770-5. PMID 12481060 DOI: 10.1104/Pp.007625  0.84
2002 Parcy F, Bomblies K, Weigel D. Interaction of LEAFY, AGAMOUS and TERMINAL FLOWER1 in maintaining floral meristem identity in Arabidopsis. Development (Cambridge, England). 129: 2519-27. PMID 11973282  1
2002 Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics. 160: 683-96. PMID 11861571  1
2002 Weigel D, Jürgens G. Stem cells that make stems. Nature. 415: 751-4. PMID 11845197 DOI: 10.1038/415751A  0.36
2002 Lohmann JU, Weigel D. Building beauty: the genetic control of floral patterning. Developmental Cell. 2: 135-42. PMID 11832239 DOI: 10.1016/S1534-5807(02)00122-3  1
2002 Yun JY, Weigel D, Lee I. Ectopic expression of SUPERMAN suppresses development of petals and stamens. Plant & Cell Physiology. 43: 52-7. PMID 11828022 DOI: 10.1093/Pcp/Pcf018  0.84
2002 Wu X, Weigel D, Wigge PA. Signaling in plants by intercellular RNA and protein movement. Genes & Development. 16: 151-8. PMID 11799058 DOI: 10.1101/Gad.952002  0.96
2002 Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/Ng813  1
2001 Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J. Natural variation in light sensitivity of Arabidopsis. Nature Genetics. 29: 441-6. PMID 11726931 DOI: 10.1038/Ng777  1
2001 Ahearn KP, Johnson HA, Weigel D, Wagner DR. NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant & Cell Physiology. 42: 1130-9. PMID 11673629 DOI: 10.1093/Pcp/Pce143  1
2001 Lohmann JU, Hong RL, Hobe M, Busch MA, Parcy F, Simon R, Weigel D. A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell. 105: 793-803. PMID 11440721 DOI: 10.1016/S0092-8674(01)00384-1  1
2001 Mimida N, Goto K, Kobayashi Y, Araki T, Ahn JH, Weigel D, Murata M, Motoyoshi F, Sakamoto W. Functional divergence of the TFL1-like gene family in Arabidopsis revealed by characterization of a novel homologue. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 6: 327-36. PMID 11318875 DOI: 10.1046/J.1365-2443.2001.00425.X  0.8
2001 Gocal GF, King RW, Blundell CA, Schwartz OM, Andersen CH, Weigel D. Evolution of floral meristem identity genes. Analysis of Lolium temulentum genes related to APETALA1 and LEAFY of Arabidopsis. Plant Physiology. 125: 1788-801. PMID 11299359 DOI: 10.1104/Pp.125.4.1788  1
2001 Wigge PA, Weigel D. Arabidopsis genome: life without notch. Current Biology : Cb. 11: R112-4. PMID 11231172 DOI: 10.1016/S0960-9822(01)00043-4  0.96
2001 Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science (New York, N.Y.). 291: 306-9. PMID 11209081 DOI: 10.1126/Science.291.5502.306  0.84
2001 Benfey PN, Weigel D. Transcriptional networks controlling plant development Plant Physiology. 125: 109-111. PMID 11154309 DOI: 10.1104/Pp.125.1.109  1
2000 Maloof JN, Borevitz JO, Weigel D, Chory J. Natural variation in phytochrome signaling. Seminars in Cell & Developmental Biology. 11: 523-30. PMID 11145882 DOI: 10.1006/Scdb.2000.0198  1
2000 Sessions A, Yanofsky MF, Weigel D. Cell-cell signaling and movement by the floral transcription factors LEAFY and APETALA1. Science (New York, N.Y.). 289: 779-82. PMID 10926540 DOI: 10.1126/Science.289.5480.779  0.96
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423  1
2000 Blázquez MA, Weigel D. Integration of floral inductive signals in Arabidopsis. Nature. 404: 889-92. PMID 10786797 DOI: 10.1038/35009125  0.84
2000 Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, et al. Activation tagging in Arabidopsis. Plant Physiology. 122: 1003-13. PMID 10759496 DOI: 10.1104/Pp.122.4.1003  1
2000 Christensen SK, Dagenais N, Chory J, Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell. 100: 469-78. PMID 10693763 DOI: 10.1016/S0092-8674(00)80682-0  0.84
1999 Bomblies K, Dagenais N, Weigel D. Redundant enhancers mediate transcriptional repression of AGAMOUS by APETALA2. Developmental Biology. 216: 260-4. PMID 10588876 DOI: 10.1006/Dbio.1999.9504  1
1999 Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D. Activation tagging of the floral inducer FT Science. 286: 1962-1965. PMID 10583961 DOI: 10.1126/Science.286.5446.1962  1
1999 Sessions A, Weigel D, Yanofsky MF. The Arabidopsis thaliana MERISTEM LAYER 1 promoter specifies epidermal expression in meristems and young primordia. The Plant Journal : For Cell and Molecular Biology. 20: 259-63. PMID 10571886 DOI: 10.1046/J.1365-313X.1999.00594.X  0.96
1999 Blázquez MA, Weigel D. Independent regulation of flowering by phytochrome B and gibberellins in Arabidopsis. Plant Physiology. 120: 1025-32. PMID 10444085 DOI: 10.1104/Pp.120.4.1025  0.84
1999 Busch MA, Bomblies K, Weigel D. Activation of a floral homeotic gene in Arabidopsis. Science (New York, N.Y.). 285: 585-7. PMID 10417388 DOI: 10.1126/Science.285.5427.585  1
1999 Aukerman MJ, Lee I, Weigel D, Amasino RM. The Arabidopsis flowering-time gene LUMINIDEPENDENS is expressed primarily in regions of cell proliferation and encodes a nuclear protein that regulates LEAFY expression. The Plant Journal : For Cell and Molecular Biology. 18: 195-203. PMID 10363371 DOI: 10.1046/J.1365-313X.1999.00442.X  0.84
1998 Nilsson O, Wu E, Wolfe DS, Weigel D. Genetic ablation of flowers in transgenic Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 15: 799-804. PMID 9807818 DOI: 10.1046/J.1365-313X.1998.00260.X  1
1998 Parcy F, Nilsson O, Busch MA, Lee I, Weigel D. A genetic framework for floral patterning. Nature. 395: 561-6. PMID 9783581 DOI: 10.1038/26903  1
1998 Nilsson O, Lee I, Blázquez MA, Weigel D. Flowering-time genes modulate the response to LEAFY activity. Genetics. 150: 403-10. PMID 9725856  0.96
1998 Sessions A, Yanofsky MF, Weigel D. Patterning the floral meristem. Seminars in Cell & Developmental Biology. 9: 221-6. PMID 9599419 DOI: 10.1006/Scdb.1997.0206  0.96
1998 Blazquez MA, Green R, Nilsson O, Sussman MR, Weigel D. Gibberellins promote flowering of arabidopsis by activating the LEAFY promoter The Plant Cell. 10: 791-800. PMID 9596637 DOI: 10.1105/Tpc.10.5.791  1
1997 Blázquez MA, Soowal LN, Lee I, Weigel D. LEAFY expression and flower initiation in Arabidopsis. Development (Cambridge, England). 124: 3835-44. PMID 9367439  0.84
1997 Nilsson O, Weigel D. Modulating the timing of flowering. Current Opinion in Biotechnology. 8: 195-9. PMID 9079721 DOI: 10.1016/S0958-1669(97)80102-4  0.96
1997 Lee I, Wolfe DS, Nilsson O, Weigel D. A LEAFY co-regulator encoded by UNUSUAL FLORAL ORGANS. Current Biology : Cb. 7: 95-104. PMID 9016705 DOI: 10.1016/S0960-9822(06)00053-4  1
1995 Weigel D, Nilsson O. A developmental switch sufficient for flower initiation in diverse plants. Nature. 377: 495-500. PMID 7566146 DOI: 10.1038/377495A0  0.96
1994 Brönner G, Chu-LaGraff Q, Doe CQ, Cohen B, Weigel D, Taubert H, Jäckle H. Sp1/egr-like zinc-finger protein required for endoderm specification and germ-layer formation in Drosophila. Nature. 369: 664-8. PMID 8208294 DOI: 10.1038/369664A0  1
1994 Weigel D, Meyerowitz EM. The ABCs of floral homeotic genes. Cell. 78: 203-9. PMID 7913881 DOI: 10.1016/0092-8674(94)90291-7  1
1993 Weigel D, Meyerowitz EM. Activation of floral homeotic genes in Arabidopsis. Science (New York, N.Y.). 261: 1723-6. PMID 17794879 DOI: 10.1126/Science.261.5129.1723  1
1992 Bowman JL, Sakai H, Jack T, Weigel D, Mayer U, Meyerowitz EM. SUPERMAN, a regulator of floral homeotic genes in Arabidopsis Development. 114: 599-615. PMID 1352237  1
1992 Weigel D, Alvarez J, Smyth DR, Yanofsky MF, Meyerowitz EM. LEAFY controls floral meristem identity in Arabidopsis. Cell. 69: 843-59. PMID 1350515 DOI: 10.1016/0092-8674(92)90295-N  1
1991 Meyerowitz EM, Bowman JL, Brockman LL, Drews GN, Jack T, Sieburth LE, Weigel D. A genetic and molecular model for flower development in Arabidopsis thaliana. Development (Cambridge, England). Supplement. 1: 157-67. PMID 1742498  1
1990 Weigel D, Jäckle H. The fork head domain: A novel DNA binding motif of eukaryotic transcription factors? Cell. 63: 455-456. PMID 2225060 DOI: 10.1016/0092-8674(90)90439-L  1
1990 Weigel D, Jürgens G, Klingler M, Jäckle H. Two gap genes mediate maternal terminal pattern information in Drosophila Science. 248: 495-498. PMID 2158673 DOI: 10.1126/Science.2158673  1
1990 Gaul U, Weigel D. Regulation of Krüppel expression in the anlage of the Malpighian tubules in the Drosophila embryo. Mechanisms of Development. 33: 57-67. PMID 1982922 DOI: 10.1016/0925-4773(90)90135-9  1
1990 Weigel D, Seifert E, Reuter D, Jäckle H. Regulatory elements controlling expression of the Drosophila homeotic gene fork head Embo Journal. 9: 1199-1207. PMID 1969795 DOI: 10.1002/J.1460-2075.1990.Tb08227.X  1
1989 Weigel D, Bellen HJ, Jürgens G, Jäckle H. Primordium specific requirement of the homeotic gene fork head in the developing gut of the Drosophila embryo. Roux's Archives of Developmental Biology : the Official Organ of the Edbo. 198: 201-210. PMID 28305483 DOI: 10.1007/BF00375906  0.84
1989 Jäckle H, Gaul U, Nauber U, Gerwin N, Pankratz MJ, Seifert E, Schuh R, Weigel D. Die Naturwissenschaften. 76: 512-517. PMID 27837228 DOI: 10.1186/Gb-2005-6-11-P13  0.84
1989 Jckle H, Gaul U, Nauber U, Gerwin N, Pankratz MJ, Seifert E, Schuh R, Weigel D. [Pattern formation in Drosophila]. Die Naturwissenschaften. 76: 512-7. PMID 2693975 DOI: 10.1007/Bf00374123  1
1989 Weigel D, Jäckle H. Novel homeotic genes in Drosophila melanogaster Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 67: 393-396. PMID 2574046 DOI: 10.1139/O89-063  1
1989 Weigel D, Jürgens G, Küttner F, Seifert E, Jäckle H. The homeotic gene fork head encodes a nuclear protein and is expressed in the terminal regions of the Drosophila embryo Cell. 57: 645-658. PMID 2566386 DOI: 10.1016/0092-8674(89)90133-5  1
1988 Jürgens G, Weigel D. Terminal versus segmental development in the Drosophila embryo: the role of the homeotic gene fork head. Roux's Archives of Developmental Biology : the Official Organ of the Edbo. 197: 345-354. PMID 28305430 DOI: 10.1007/BF00375954  0.36
1987 Rijsewijk F, Schuermann M, Wagenaar E, Parren P, Weigel D, Nusse R. The Drosophila homology of the mouse mammary oncogene int-1 is identical to the segment polarity gene wingless Cell. 50: 649-657. PMID 3111720 DOI: 10.1016/0092-8674(87)90038-9  1
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