Gloria M. Coruzzi, Ph.D - Publications

1984-1991 Lab of Plant Molecular Biology Rockefeller University, New York, NY, United States 
 1991- Center for Genomics & Systems Biology New York University, New York, NY, United States 
Plant Systems Biology

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Shanks CM, Huang J, Cheng CY, Shih HS, Brooks MD, Alvarez JM, Araus V, Swift J, Henry A, Coruzzi GM. Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice. Frontiers in Plant Science. 13: 1006044. PMID 36507422 DOI: 10.3389/fpls.2022.1006044  0.407
2022 Brooks MD, Reed KM, Krouk G, Coruzzi GM, Bargmann BOR. The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells. Methods in Molecular Biology (Clifton, N.J.). 2594: 1-12. PMID 36264484 DOI: 10.1007/978-1-0716-2815-7_1  0.852
2022 Contreras-López O, Vidal EA, Riveras E, Alvarez JM, Moyano TC, Sparks EE, Medina J, Pasquino A, Benfey PN, Coruzzi GM, Gutiérrez RA. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35046022 DOI: 10.1073/pnas.2107879119  0.843
2021 Swift J, Greenham K, Ecker JR, Coruzzi GM, McClung CR. The biology of time: dynamic responses of cell types to developmental, circadian, and environmental cues. The Plant Journal : For Cell and Molecular Biology. PMID 34797944 DOI: 10.1111/tpj.15589  0.797
2021 Eshel G, Araus V, Undurraga S, Soto DC, Moraga C, Montecinos A, Moyano T, Maldonado J, Díaz FP, Varala K, Nelson CW, Contreras-López O, Pal-Gabor H, Kraiser T, Carrasco-Puga G, ... ... Coruzzi GM, et al. Plant ecological genomics at the limits of life in the Atacama Desert. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34725254 DOI: 10.1073/pnas.2101177118  0.825
2021 Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w  0.809
2021 Safi A, Medici A, Szponarski W, Martin F, Clément-Vidal A, Marshall-Colon A, Ruffel S, Gaymard F, Rouached H, Leclercq J, Coruzzi G, Lacombe B, Krouk G. GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways. Journal of Experimental Botany. PMID 33758916 DOI: 10.1093/jxb/erab114  0.845
2021 Alvarez JM, Brooks MD, Swift J, Coruzzi GM. Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks. Annual Review of Plant Biology. PMID 33667112 DOI: 10.1146/annurev-arplant-081320-090914  0.827
2021 Brooks MD, Juang CL, Katari MS, Alvarez JM, Pasquino A, Shih HJ, Huang J, Shanks C, Cirrone J, Coruzzi GM. ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks. Plant Physiology. 185: 49-66. PMID 33631799 DOI: 10.1093/plphys/kiaa012  0.826
2020 Cirrone J, Brooks MD, Bonneau R, Coruzzi GM, Shasha DE. Author Correction: OutPredict: multiple datasets can improve prediction of expression and inference of causality. Scientific Reports. 10: 14141. PMID 32811842 DOI: 10.1038/S41598-020-69883-2  0.675
2020 Swift J, Alvarez JM, Araus V, Gutiérrez RA, Coruzzi GM. Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates. Proceedings of the National Academy of Sciences of the United States of America. PMID 32414922 DOI: 10.1073/Pnas.1918619117  0.813
2020 Cirrone J, Brooks MD, Bonneau R, Coruzzi GM, Shasha DE. OutPredict: multiple datasets can improve prediction of expression and inference of causality. Scientific Reports. 10: 6804. PMID 32321967 DOI: 10.1038/S41598-020-63347-3  0.73
2020 Zhang X, Ménard R, Li Y, Coruzzi GM, Heitz T, Shen WH, Berr A. SDG8 Potentiates the Sustainable Transcriptional Induction of the Genes and During Plant Defense Response. Frontiers in Plant Science. 11: 277. PMID 32218796 DOI: 10.3389/Fpls.2020.00277  0.575
2020 Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks M, Krouk G, Ruffel S, Lejay L, Crawford N, Coruzzi GM, Gutiérrez RA. Nitrate 2020: Thirty years from transport to signaling networks. The Plant Cell. PMID 32169959 DOI: 10.1105/Tpc.19.00748  0.818
2020 Alvarez JM, Schinke AL, Brooks MD, Pasquino A, Leonelli L, Varala K, Safi A, Krouk G, Krapp A, Coruzzi GM. Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade. Nature Communications. 11: 1157. PMID 32123177 DOI: 10.1038/S41467-020-14979-6  0.823
2020 Araus V, Swift J, Alvarez JM, Henry A, Coruzzi GM. A balancing act: how plants integrate nitrogen and water signals. Journal of Experimental Botany. PMID 31990028 DOI: 10.1093/Jxb/Eraa054  0.839
2019 Li Y, Brooks M, Yeoh-Wang J, McCoy RM, Rock TM, Pasquino A, Moon CI, Patrick RM, Tanurdzic M, Ruffel S, Widhalm JR, McCombie WR, Coruzzi GM. SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling. Plant Physiology. PMID 31641075 DOI: 10.1104/Pp.19.00682  0.812
2019 Heerah S, Katari MS, Penjor R, Coruzzi GM, Marshall-Colon A. WRKY1 mediates transcriptional regulation of light and nitrogen signaling pathways. Plant Physiology. PMID 31409699 DOI: 10.1104/Pp.19.00685  0.835
2019 Falter-Braun P, Brady S, Gutiérrez RA, Coruzzi GM, Krouk G. iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community. Molecular Plant. 12: 727-730. PMID 31125688 DOI: 10.1016/J.Molp.2019.05.005  0.807
2019 Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications. 10: 1569. PMID 30952851 DOI: 10.1038/S41467-019-09522-1  0.813
2019 Swift J, Adame M, Tranchina D, Henry A, Coruzzi GM. Water impacts nutrient dose responses genome-wide to affect crop production. Nature Communications. 10: 1374. PMID 30914651 DOI: 10.1038/S41467-019-09287-7  0.751
2018 Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29769331 DOI: 10.1073/Pnas.1721487115  0.836
2018 Para A, Li Y, Coruzzi GM. μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts. Methods in Molecular Biology (Clifton, N.J.). 1761: 249-261. PMID 29525963 DOI: 10.1007/978-1-4939-7747-5_19  0.815
2017 Walker L, Boddington C, Jenkins D, Wang Y, Grønlund JT, Hulsmans J, Kumar S, Patel D, Moore JD, Carter A, Samavedam S, Bomono G, Hersh DS, Coruzzi GM, Burroughs NJ, et al. Root architecture shaping by the environment is orchestrated by dynamic gene expression in space and time. The Plant Cell. PMID 28893852 DOI: 10.1105/Tpc.16.00961  0.832
2016 Ristova D, Carré C, Pervent M, Medici A, Kim GJ, Scalia D, Ruffel S, Birnbaum KD, Lacombe B, Busch W, Coruzzi GM, Krouk G. Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root. Science Signaling. 9: rs13. PMID 27811143 DOI: 10.1126/Scisignal.Aaf2768  0.833
2016 Swift J, Coruzzi G. A matter of time - How transient transcription factor interactions create dynamic gene regulatory networks. Biochimica Et Biophysica Acta. PMID 27546191 DOI: 10.1016/J.Bbagrm.2016.08.007  0.786
2016 O'Brien JA, Vega A, Bouguyon E, Krouk G, Gojon A, Coruzzi G, Gutiérrez RA. Nitrate transport, sensing and responses in plants. Molecular Plant. PMID 27212387 DOI: 10.1016/J.Molp.2016.05.004  0.846
2016 Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". Bmc Genomics. 17: 92. PMID 26843062 DOI: 10.1186/S12864-016-2410-2  0.814
2016 Ruffel S, Poitout A, Krouk G, Coruzzi GM, Lacombe B. Long-distance nitrate signaling displays cytokinin dependent and independent branches. Journal of Integrative Plant Biology. 58: 226-9. PMID 26619818 DOI: 10.1111/Jipb.12453  0.818
2015 Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM. "Hit-and-Run" leaves its mark: Catalyst transcription factors and chromatin modification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26108710 DOI: 10.1002/Bies.201400205  0.818
2015 Li Y, Varala K, Coruzzi GM. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics : Tig. 31: 509-15. PMID 26072453 DOI: 10.1016/J.Tig.2015.05.005  0.812
2015 Obertello M, Shrivastava S, Katari MS, Coruzzi GM. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice. Plant Physiology. 168: 1830-43. PMID 26045464 DOI: 10.1104/Pp.114.255877  0.819
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2  0.811
2015 Medici A, Marshall-Colon A, Ronzier E, Szponarski W, Wang R, Gojon A, Crawford NM, Ruffel S, Coruzzi GM, Krouk G. AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip. Nature Communications. 6: 6274. PMID 25723764 DOI: 10.1038/Ncomms7274  0.827
2015 Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM. Correction: Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture (Proceedings of the National Academy of Sciences of the United States of America (2015) 110 (15133-15138) DOI: 0.1073/pnas.1305883110) Proceedings of the National Academy of Sciences of the United States of America. 112: E2555. DOI: 10.1073/Pnas.1507065112  0.782
2014 Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. Plos Genetics. 10: e1004487. PMID 25032823 DOI: 10.1371/Journal.Pgen.1004487  0.795
2014 Li Y, Krouk G, Coruzzi GM, Ruffel S. Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants. Journal of Experimental Botany. 65: 5601-10. PMID 24963003 DOI: 10.1093/Jxb/Eru263  0.839
2014 Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 10371-6. PMID 24958886 DOI: 10.1073/Pnas.1404657111  0.823
2014 Léran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, ... ... Coruzzi G, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends in Plant Science. 19: 5-9. PMID 24055139 DOI: 10.1016/J.Tplants.2013.08.008  0.732
2013 Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. Bmc Genomics. 14: 701. PMID 24119003 DOI: 10.1186/1471-2164-14-701  0.855
2013 Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD. Plasticity regulators modulate specific root traits in discrete nitrogen environments. Plos Genetics. 9: e1003760. PMID 24039603 DOI: 10.1371/Journal.Pgen.1003760  0.824
2013 Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM. Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture. Proceedings of the National Academy of Sciences of the United States of America. 110: 15133-8. PMID 23980140 DOI: 10.1073/Pnas.1305883110  0.828
2013 Krouk G, Lingeman J, Colon AM, Coruzzi G, Shasha D. Gene regulatory networks in plants: learning causality from time and perturbation. Genome Biology. 14: 123. PMID 23805876 DOI: 10.1186/Gb-2013-14-6-123  0.829
2013 Bargmann BO, Marshall-Colon A, Efroni I, Ruffel S, Birnbaum KD, Coruzzi GM, Krouk G. TARGET: a transient transformation system for genome-wide transcription factor target discovery. Molecular Plant. 6: 978-80. PMID 23335732 DOI: 10.1093/Mp/Sst010  0.785
2013 Ristova D, Rosas U, Krouk G, Ruffel S, Birnbaum KD, Coruzzi GM. RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis. Plant Physiology. 161: 1086-96. PMID 23335624 DOI: 10.1104/Pp.112.210872  0.813
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411  0.839
2011 Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM. Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand. Proceedings of the National Academy of Sciences of the United States of America. 108: 18524-9. PMID 22025711 DOI: 10.1073/Pnas.1108684108  0.836
2011 Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssières A, Shen WH, Coruzzi GM, Gojon A, Lepetit M. High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation. Proceedings of the National Academy of Sciences of the United States of America. 108: 13329-34. PMID 21788519 DOI: 10.1073/Pnas.1017863108  0.834
2011 Krouk G, Ruffel S, Gutiérrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B. A framework integrating plant growth with hormones and nutrients. Trends in Plant Science. 16: 178-82. PMID 21393048 DOI: 10.1016/J.Tplants.2011.02.004  0.827
2010 Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM. Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate. Genome Biology. 11: R123. PMID 21182762 DOI: 10.1186/Gb-2010-11-12-R123  0.855
2010 Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM. Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis. Bmc Systems Biology. 4: 111. PMID 20704717 DOI: 10.1186/1752-0509-4-111  0.84
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/Gbe/Evq012  0.843
2010 Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA. Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 4477-82. PMID 20142497 DOI: 10.1073/Pnas.0909571107  0.819
2010 Krouk G, Crawford NM, Coruzzi GM, Tsay YF. Nitrate signaling: adaptation to fluctuating environments. Current Opinion in Plant Biology. 13: 266-73. PMID 20093067 DOI: 10.1016/J.Pbi.2009.12.003  0.832
2010 Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA. VirtualPlant: a software platform to support systems biology research. Plant Physiology. 152: 500-15. PMID 20007449 DOI: 10.1104/Pp.109.147025  0.816
2010 Ruffel S, Krouk G, Coruzzi GM. A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling. Plant Physiology. 152: 445-52. PMID 19939945 DOI: 10.1104/Pp.109.148502  0.819
2009 Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM. In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana. Bmc Bioinformatics. 10: 435. PMID 20025756 DOI: 10.1186/1471-2105-10-435  0.815
2009 de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. Plos One. 4: e5764. PMID 19503618 DOI: 10.1371/Journal.Pone.0005764  0.834
2009 Nero D, Krouk G, Tranchina D, Coruzzi GM. A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule". Bmc Systems Biology. 3: 59. PMID 19500399 DOI: 10.1186/1752-0509-3-59  0.821
2009 Brenner ED, Feinberg P, Runko S, Coruzzi GM. A mutation in the Proteosomal Regulatory Particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA. Plant Molecular Biology. 70: 523-33. PMID 19412571 DOI: 10.1007/S11103-009-9489-7  0.728
2009 Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R. Gene orthology assessment with OrthologID. Methods in Molecular Biology (Clifton, N.J.). 537: 23-38. PMID 19378138 DOI: 10.1007/978-1-59745-251-9_2  0.778
2009 Krouk G, Tranchina D, Lejay L, Cruikshank AA, Shasha D, Coruzzi GM, Gutiérrez RA. A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis. Plos Computational Biology. 5: e1000326. PMID 19300494 DOI: 10.1371/Journal.Pcbi.1000326  0.842
2009 Coruzzi GM, Burga AR, Katari MS, Gutiérrez RA. Systems Biology: Principles and Applications in Plant Research Annual Plant Reviews. 35: 1-40. DOI: 10.1002/9781444312249.ch1  0.729
2008 Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, et al. 2020 vision for biology: the role of plants in addressing grand challenges in biology. Molecular Plant. 1: 561-3. PMID 19825561 DOI: 10.1093/Mp/Ssn040  0.827
2008 Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM. An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis. Bmc Systems Biology. 2: 31. PMID 18387196 DOI: 10.1186/1752-0509-2-31  0.83
2008 Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences of the United States of America. 105: 4939-44. PMID 18344319 DOI: 10.1073/Pnas.0800211105  0.843
2008 Sarkar IN, Egan MG, Coruzzi G, Lee EK, DeSalle R. Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics. Bmc Bioinformatics. 9: 103. PMID 18282301 DOI: 10.1186/1471-2105-9-103  0.649
2008 Gifford ML, Dean A, Gutierrez RA, Coruzzi GM, Birnbaum KD. Cell-specific nitrogen responses mediate developmental plasticity. Proceedings of the National Academy of Sciences of the United States of America. 105: 803-8. PMID 18180456 DOI: 10.1073/Pnas.0709559105  0.804
2008 Krouk G, Gutiérrez R, Gifford M, Birnbaum K, Shasha G, Coruzzi G. A systems approach to nitrogen regulatory networks and the Virtual Plant Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 150: S46. DOI: 10.1016/J.Cbpa.2008.04.024  0.825
2007 Gutiérrez RA, Gifford ML, Poultney C, Wang R, Shasha DE, Coruzzi GM, Crawford NM. Insights into the genomic nitrate response using genetics and the Sungear Software System. Journal of Experimental Botany. 58: 2359-67. PMID 17470441 DOI: 10.1093/Jxb/Erm079  0.827
2007 Gutiérrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM. Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biology. 8: R7. PMID 17217541 DOI: 10.1186/Gb-2007-8-1-R7  0.815
2007 Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE. Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics (Oxford, England). 23: 259-61. PMID 17018536 DOI: 10.1093/Bioinformatics/Btl496  0.797
2006 de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R. ESTimating plant phylogeny: lessons from partitioning. Bmc Evolutionary Biology. 6: 48. PMID 16776834 DOI: 10.1186/1471-2148-6-48  0.799
2006 Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (Oxford, England). 22: 699-707. PMID 16410324 DOI: 10.1093/Bioinformatics/Btk040  0.8
2006 Gifford ML, Gutierrez RA, Birnbaum KD, Coruzzi GM. A systems approach to understanding N_control of gene networks in the Arabidopsis root Developmental Biology. 295: 334. DOI: 10.1016/J.Ydbio.2006.04.041  0.82
2005 Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM. EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes. Bmc Genomics. 6: 143. PMID 16225698 DOI: 10.1186/1471-2164-6-143  0.843
2005 Gutiérrez RA, Shasha DE, Coruzzi GM. Systems biology for the virtual plant. Plant Physiology. 138: 550-4. PMID 15955912 DOI: 10.1104/Pp.104.900150  0.789
2005 Chiu JC, Brenner ED, Desalle R, Barboza NM, Coruzzi GM. Analysis of glutamate receptor genes in plants: Progress and prospects Glutamate Receptors in Peripheral Tissue: Excitatory Transmission Outside the Cns. 245-255. DOI: 10.1007/0-306-48644-X_16  0.8
2004 Lejay LV, Shasha DE, Palenchar PM, Kouranov AY, Cruikshank AA, Chou MF, Coruzzi GM. Adaptive combinatorial design to explore large experimental spaces: approach and validation. Systems Biology. 1: 206-12. PMID 17051692 DOI: 10.1049/sb:20045020  0.79
2004 Palenchar PM, Kouranov A, Lejay LV, Coruzzi GM. Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biology. 5: R91. PMID 15535867 DOI: 10.1186/Gb-2004-5-11-R91  0.829
2004 Wang R, Tischner R, Gutiérrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiology. 136: 2512-22. PMID 15333754 DOI: 10.1104/Pp.104.044610  0.839
2004 Thum KE, Shin MJ, Palenchar PM, Kouranov A, Coruzzi GM. Genome-wide investigation of light and carbon signaling interactions in Arabidopsis. Genome Biology. 5: R10. PMID 14759260 DOI: 10.1186/Gb-2004-5-2-R10  0.812
2004 Wong HK, Chan HK, Coruzzi GM, Lam HM. Correlation of ASN2 gene expression with ammonium metabolism in Arabidopsis. Plant Physiology. 134: 332-8. PMID 14671018 DOI: 10.1104/Pp.103.033126  0.679
2003 Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM. Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology. 4: R78. PMID 14659015 DOI: 10.1186/Gb-2003-4-12-R78  0.834
2003 Raikhel NV, Coruzzi GM. Achieving the in silico plant. Systems biology and the future of plant biological research. Plant Physiology. 132: 404-9. PMID 12822566  0.317
2003 Lam HM, Wong P, Chan HK, Yam KM, Chen L, Chow CM, Coruzzi GM. Overexpression of the ASN1 gene enhances nitrogen status in seeds of Arabidopsis. Plant Physiology. 132: 926-35. PMID 12805621 DOI: 10.1104/Pp.103.020123  0.655
2003 Thum KE, Shasha DE, Lejay LV, Coruzzi GM. Light- and carbon-signaling pathways. Modeling circuits of interactions. Plant Physiology. 132: 440-52. PMID 12805577 DOI: 10.1104/Pp.103.022780  0.801
2003 Raikhel NV, Coruzzi GM. Plant Systems Biology Plant Physiology. 132: 403. DOI: 10.1104/Pp.023929  0.424
2002 Oliveira IC, Brears T, Knight TJ, Clark A, Coruzzi GM. Overexpression of cytosolic glutamine synthetase. Relation to nitrogen, light, and photorespiration. Plant Physiology. 129: 1170-80. PMID 12114571 DOI: 10.1104/Pp.020013  0.834
2002 Chiu JC, Brenner ED, DeSalle R, Nitabach MN, Holmes TC, Coruzzi GM. Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana. Molecular Biology and Evolution. 19: 1066-82. PMID 12082126 DOI: 10.1093/Oxfordjournals.Molbev.A004165  0.816
2002 Miesak BH, Coruzzi GM. Molecular and physiological analysis of Arabidopsis mutants defective in cytosolic or chloroplastic aspartate aminotransferase. Plant Physiology. 129: 650-60. PMID 12068109 DOI: 10.1104/Pp.005090  0.32
2002 Lancien M, Martin M, Hsieh MH, Leustek T, Goodman H, Coruzzi GM. Arabidopsis glt1-T mutant defines a role for NADH-GOGAT in the non-photorespiratory ammonium assimilatory pathway. The Plant Journal : For Cell and Molecular Biology. 29: 347-58. PMID 11844111 DOI: 10.1046/J.1365-313X.2002.01218.X  0.77
2002 Lancien M, Martin M, Hsieh MH, Leustek T, Goodman H, Coruzzi GM. Arabidopsis glt1-T mutant defines a role for NADH-GOGAT in the non-photorespiratory ammonium assimilatory pathway Plant Journal. 29: 347-358. DOI: 10.1046/j.1365-313X.2002.01218.x  0.715
2001 Shasha DE, Kouranov AY, Lejay LV, Chou MF, Coruzzi GM. Using combinatorial design to study regulation by multiple input signals. A tool for parsimony in the post-genomics era. Plant Physiology. 127: 1590-4. PMID 11743103 DOI: 10.1104/Pp.010683  0.817
2001 Lacombe B, Becker D, Hedrich R, DeSalle R, Hollmann M, Kwak JM, Schroeder JI, Le Novère N, Nam HG, Spalding EP, Tester M, Turano FJ, Chiu J, Coruzzi G. The identity of plant glutamate receptors. Science (New York, N.Y.). 292: 1486-7. PMID 11379626 DOI: 10.1126/Science.292.5521.1486B  0.81
2001 Oliveira IC, Brenner E, Chiu J, Hsieh MH, Kouranov A, Lam HM, Shin MJ, Coruzzi G. Metabolite and light regulation of metabolism in plants: lessons from the study of a single biochemical pathway. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Mã©Dicas E Biolã³Gicas / Sociedade Brasileira De Biofã­Sica ... [Et Al.]. 34: 567-75. PMID 11323742 DOI: 10.1590/S0100-879X2001000500003  0.838
2001 Coruzzi GM, Zhou L. Carbon and nitrogen sensing and signaling in plants: emerging 'matrix effects'. Current Opinion in Plant Biology. 4: 247-53. PMID 11312136 DOI: 10.1016/S1369-5266(00)00168-0  0.519
2001 Coruzzi G, Bush DR. Nitrogen and carbon nutrient and metabolite signaling in plants. Plant Physiology. 125: 61-4. PMID 11154297 DOI: 10.1104/Pp.125.1.61  0.46
2000 Brenner ED, Martinez-Barboza N, Clark AP, Liang QS, Stevenson DW, Coruzzi GM. Arabidopsis mutants resistant to S(+)-beta-methyl-alpha, beta-diaminopropionic acid, a cycad-derived glutamate receptor agonist. Plant Physiology. 124: 1615-24. PMID 11115879 DOI: 10.1104/Pp.124.4.1615  0.814
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423  0.554
1999 Oliveira IC, Coruzzi GM. Carbon and amino acids reciprocally modulate the expression of glutamine synthetase in Arabidopsis. Plant Physiology. 121: 301-10. PMID 10482686 DOI: 10.1104/Pp.121.1.301  0.431
1999 Chiu J, DeSalle R, Lam HM, Meisel L, Coruzzi G. Molecular evolution of glutamate receptors: A primitive signaling mechanism that existed before plants and animals diverged Molecular Biology and Evolution. 16: 826-838. PMID 10368960 DOI: 10.1093/Oxfordjournals.Molbev.A026167  0.824
1998 Lam HM, Hsieh MH, Coruzzi G. Reciprocal regulation of distinct asparagine synthetase genes by light and metabolites in Arabidopsis thaliana Plant Journal. 16: 345-353. PMID 9881155 DOI: 10.1046/J.1365-313X.1998.00302.X  0.828
1998 Lam HM, Chiu J, Hsieh MH, Meisel L, Oliveira IC, Shin M, Coruzzi G. Glutamate-receptor genes in plants [5] Nature. 396: 125-126. PMID 9823891 DOI: 10.1038/24066  0.815
1998 Hsieh MH, Lam HM, Van De Loo FJ, Coruzzi G. A PII-like protein in Arabidopsis: Putative role in nitrogen sensing Proceedings of the National Academy of Sciences of the United States of America. 95: 13965-13970. PMID 9811909 DOI: 10.1073/Pnas.95.23.13965  0.826
1998 Schultz CJ, Hsu M, Miesak B, Coruzzi GM. Arabidopsis mutants define an in vivo role for isoenzymes of aspartate aminotransferase in plant nitrogen assimilation. Genetics. 149: 491-9. PMID 9611168  0.727
1998 Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM. Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation. The Plant Cell. 10: 741-52. PMID 9596633 DOI: 10.1105/Tpc.10.5.741  0.403
1998 Ngai N, Tsai FY, Coruzzi G. Light-induced transcriptional repression of the pea AS1 gene: identification of cis-elements and transfactors. The Plant Journal : For Cell and Molecular Biology. 12: 1021-34. PMID 9418044 DOI: 10.1046/J.1365-313X.1997.12051021.X  0.401
1996 Lam HM, Coschigano KT, Oliveira IC, Melo-Oliveira R, Coruzzi GM. THE MOLECULAR-GENETICS OF NITROGEN ASSIMILATION INTO AMINO ACIDS IN HIGHER PLANTS. Annual Review of Plant Physiology and Plant Molecular Biology. 47: 569-593. PMID 15012301 DOI: 10.1146/annurev.arplant.47.1.569  0.627
1996 Melo-Oliveira R, Oliveira IC, Coruzzi GM. Arabidopsis mutant analysis and gene regulation define a nonredundant role for glutamate dehydrogenase in nitrogen assimilation. Proceedings of the National Academy of Sciences of the United States of America. 93: 4718-23. PMID 8643469 DOI: 10.1073/Pnas.93.10.4718  0.465
1995 Walker EL, Weeden NF, Taylor CB, Green P, Coruzzi GM. Molecular evolution of duplicate copies of genes encoding cytosolic glutamine synthetase in Pisum sativum. Plant Molecular Biology. 29: 1111-25. PMID 8616212 DOI: 10.1007/Bf00020456  0.645
1995 Schultz CJ, Coruzzi GM. The aspartate aminotransferase gene family of Arabidopsis encodes isoenzymes localized to three distinct subcellular compartments. The Plant Journal : For Cell and Molecular Biology. 7: 61-75. PMID 7894512 DOI: 10.1046/J.1365-313X.1995.07010061.X  0.759
1995 Lam HM, Coschigano K, Schultz C, Melo-Oliveira R, Tjaden G, Oliveira I, Ngai N, Hsieh MH, Coruzzi G. Use of arabidopsis mutants and genes to study amide amino acid biosynthesis Plant Cell. 7: 887-898. PMID 7640525 DOI: 10.1105/Tpc.7.7.887  0.834
1995 Tjaden G, Edwards JW, Coruzzi GM. Cis elements and trans-acting factors affecting regulation of a nonphotosynthetic light-regulated gene for chloroplast glutamine synthetase. Plant Physiology. 108: 1109-17. PMID 7630938 DOI: 10.1104/Pp.108.3.1109  0.779
1994 Tjaden G, Coruzzi GM. A novel AT-rich DNA binding protein that combines an HMG I-like DNA binding domain with a putative transcription domain. The Plant Cell. 6: 107-18. PMID 7907505 DOI: 10.1105/Tpc.6.1.107  0.353
1994 Lam HM, Peng SS, Coruzzi GM. Metabolic regulation of the gene encoding glutamine-dependent asparagine synthetase in Arabidopsis thaliana. Plant Physiology. 106: 1347-57. PMID 7846154 DOI: 10.1104/Pp.106.4.1347  0.681
1993 Coruzzi GM, Last RL. A Crucial Role for the NSF Postdoctoral Fellowship Program in Plant Biology. The Plant Cell. 5: 722. PMID 12271083 DOI: 10.1105/Tpc.5.7.722  0.375
1993 Brears T, Liu C, Knight TJ, Coruzzi GM. Ectopic Overexpression of Asparagine Synthetase in Transgenic Tobacco. Plant Physiology. 103: 1285-1290. PMID 12232020 DOI: 10.1104/Pp.103.4.1285  0.835
1992 Benfey PN, Coruzzi G. Appointments and awards Plant Molecular Biology Reporter. 10: 4-4. DOI: 10.1007/Bf02669258  0.469
1991 McGrath RB, Coruzzi GM. A gene network controlling glutamine and asparagine biosynthesis in plants. The Plant Journal : For Cell and Molecular Biology. 1: 275-80. PMID 1688250 DOI: 10.1046/J.1365-313X.1991.00999.X  0.475
1991 Brears T, Walker EL, Coruzzi GM. A promoter sequence involved in cell-specific expression of the pea glutamine synthetase GS3A gene in organs of transgenic tobacco and alfalfa. The Plant Journal : For Cell and Molecular Biology. 1: 235-44. PMID 1688248 DOI: 10.1111/J.1365-313X.1991.00235.X  0.815
1991 Tsai FY, Coruzzi G. Light represses transcription of asparagine synthetase genes in photosynthetic and nonphotosynthetic organs of plants. Molecular and Cellular Biology. 11: 4966-72. PMID 1681424 DOI: 10.1128/Mcb.11.10.4966  0.46
1991 Coruzzi G. Molecular approaches to the study of amino acid biosynthesis in plants Plant Science. 74: 145-155. DOI: 10.1016/0168-9452(91)90040-F  0.413
1990 Edwards JW, Coruzzi GM. Cell-specific gene expression in plants. Annual Review of Genetics. 24: 275-303. PMID 2088170 DOI: 10.1146/Annurev.Ge.24.120190.001423  0.759
1990 Edwards JW, Walker EL, Coruzzi GM. Cell-specific expression in transgenic plants reveals nonoverlapping roles for chloroplast and cytosolic glutamine synthetase. Proceedings of the National Academy of Sciences of the United States of America. 87: 3459-63. PMID 1970638 DOI: 10.1073/Pnas.87.9.3459  0.823
1990 Tsai FY, Coruzzi GM. Dark-induced and organ-specific expression of two asparagine synthetase genes in Pisum sativum. The Embo Journal. 9: 323-32. PMID 1968003 DOI: 10.1002/J.1460-2075.1990.Tb08114.X  0.401
1989 Walker EL, Coruzzi GM. Developmentally Regulated Expression of the Gene Family for Cytosolic Glutamine Synthetase in Pisum sativum. Plant Physiology. 91: 702-8. PMID 16667090 DOI: 10.1104/Pp.91.2.702  0.651
1989 Edwards JW, Coruzzi GM. Photorespiration and light act in concert to regulate the expression of the nuclear gene for chloroplast glutamine synthetase. The Plant Cell. 1: 241-8. PMID 2577725 DOI: 10.1105/Tpc.1.2.241  0.764
1988 Tingey SV, Tsai FY, Edwards JW, Walker EL, Coruzzi GM. Chloroplast and cytosolic glutamine synthetase are encoded by homologous nuclear genes which are differentially expressed in vivo. The Journal of Biological Chemistry. 263: 9651-7. PMID 2898472  0.81
1987 Tingey SV, Coruzzi GM. Glutamine Synthetase of Nicotiana plumbaginifolia: Cloning and in Vivo Expression. Plant Physiology. 84: 366-73. PMID 16665445 DOI: 10.1104/Pp.84.2.366  0.694
1987 Tingey SV, Walker EL, Coruzzi GM. Glutamine synthetase genes of pea encode distinct polypeptides which are differentially expressed in leaves, roots and nodules. The Embo Journal. 6: 1-9. PMID 2884100 DOI: 10.1002/J.1460-2075.1987.Tb04710.X  0.766
1986 Fluhr R, Moses P, Morelli G, Coruzzi G, Chua NH. Expression dynamics of the pea rbcS multigene family and organ distribution of the transcripts. The Embo Journal. 5: 2063-2071. PMID 16453702 DOI: 10.1002/J.1460-2075.1986.Tb04467.X  0.745
1984 Broglie R, Coruzzi G, Keith B, Chua NH. Molecular biology of C4 photosynthesis in Zea mays: differential localization of proteins and mRNAs in the two leaf cell types. Plant Molecular Biology. 3: 431-44. PMID 24310577 DOI: 10.1007/Bf00033391  0.461
1984 Broglie R, Coruzzi G, Fraley RT, Rogers SG, Horsch RB, Niedermeyer JG, Fink CL, Chua NH. Light-regulated expression of a pea ribulose-1,5-bisphosphate carboxylase small subunit gene in transformed plant cells. Science (New York, N.Y.). 224: 838-43. PMID 6719112 DOI: 10.1126/Science.6719112  0.602
1984 Coruzzi G, Broglie R, Edwards C, Chua NH. Tissue-specific and light-regulated expression of a pea nuclear gene encoding the small subunit of ribulose-1,5-bisphosphate carboxylase. The Embo Journal. 3: 1671-9. PMID 6479146  0.514
1984 Coruzzi G, Broglie R, Edwards C, Chua NH. Tissue‐specific and light‐regulated expression of a pea nuclear gene encoding the small subunit of ribulose‐1,5‐bisphosphate carboxylase. The Embo Journal. 3: 1671-1679. DOI: 10.1002/J.1460-2075.1984.Tb02031.X  0.418
1983 Coruzzi G, Broglie R, Cashmore A, Chua NH. Nucleotide sequences of two pea cDNA clones encoding the small subunit of ribulose 1,5-bisphosphate carboxylase and the major chlorophyll a/b-binding thylakoid polypeptide. The Journal of Biological Chemistry. 258: 1399-402. PMID 6296093  0.397
1983 Broglie R, Coruzzi G, Lamppa G, Keith B, Chua N. Structural Analysis of Nuclear Genes Coding for the Precursor to the Small Subunit of Wheat Ribulose–1,5–Bisphosphate Carboxylase Nature Biotechnology. 1: 55-61. DOI: 10.1038/Nbt0383-55  0.476
1981 Coruzzi G, Bonitz SG, Thalenfeld BE, Tzagoloff A. Assembly of the mitochondrial membrane system. Analysis of the nucleotide sequence and transcripts in the oxi1 region of yeast mitochondrial DNA Journal of Biological Chemistry. 256: 12780-12787. PMID 7031051  0.518
1980 Coruzzi G, Tzagoloff A. Assembly of the mitochondrial membrame system: nuclear suppression of a cytochrome b mutation in yeast mitochondrial DNA Genetics. 95: 891-903. PMID 7009320  0.462
1980 Berlani RE, Bonitz SG, Coruzzi G, Nobrega M, Tzagoloff A. Transfer RNA genes in the cap-oxil region of yeast mitochondrial DNA Nucleic Acids Research. 8: 5017-5030. PMID 7003547 DOI: 10.1093/Nar/8.21.5017  0.564
1980 Bonitz SG, Berlani R, Coruzzi G, Li M, Macino G, Nobrega FG, Nobrega MP, Thalenfeld BE, Tzagoloff A. Codon recognition rules in yeast mitochondria Proceedings of the National Academy of Sciences of the United States of America. 77: 3167-3170. PMID 6997870 DOI: 10.1073/Pnas.77.6.3167  0.518
1980 Bonitz SG, Coruzzi G, Thalenfeld BE, Tzagoloff A, Macino G. Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrme oxidase Journal of Biological Chemistry. 255: 11927-11941. PMID 6254986  0.514
1980 Bonitz SG, Coruzzi G, Thalenfeld BE, Tzagoloff A, Macino G. Assembly of the mitochondrial membrane system. Physical map of the oxi3 locus of yeast mitochondrial DNA Journal of Biological Chemistry. 255: 11922-11926. PMID 6254985  0.475
1979 Macino G, Coruzzi G, Nobrega FG, Li M, Tzagoloff A. Use of the UGA terminator as a tryptophan codon in yeast mitochondria Proceedings of the National Academy of Sciences of the United States of America. 76: 3784-3785. PMID 226981 DOI: 10.1073/Pnas.76.8.3784  0.511
1979 Coruzzi G, Tzagoloff A. Assembly of the mitochondrial membrane system. DNA sequence of subunit 2 of yeast cytochrome oxidase Journal of Biological Chemistry. 254: 9324-9330. PMID 225327  0.484
1979 Coruzzi G, Kaye Trembath M, Tzagoloff A. [9] The isolation of mitochondrial and nuclear mutants of Saccharomyces cerevisiae with specific defects in mitochondrial functions Methods in Enzymology. 56: 95-106. PMID 223014 DOI: 10.1016/0076-6879(79)56012-1  0.538
1978 Coruzzi G, Trembath MK, Tzagoloff A. Assembly of the mitochondrial membrane system: mutations in the pho2 locus of the mitochondrial genome of Saccharomyces cerevisiae. European Journal of Biochemistry / Febs. 92: 279-87. PMID 153229 DOI: 10.1111/J.1432-1033.1978.Tb12746.X  0.528
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