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Karen Halliday - Publications

Affiliations: 
University of Edinburgh, Edinburgh, Scotland, United Kingdom 
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59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Balfagón D, Pascual LS, Sengupta S, Halliday KJ, Gómez-Cadenas A, Peláez-Vico MÁ, Sinha R, Mittler R, Zandalinas SI. WRKY48 negatively regulates plant acclimation to a combination of high light and heat stress. The Plant Journal : For Cell and Molecular Biology. PMID 38315509 DOI: 10.1111/tpj.16658  0.366
2022 Bou-Torrent J, Toledo-Ortiz G, Ortiz-Alcaide M, Cifuentes-Esquivel N, Halliday KJ, Martinez-García JF, Rodriguez-Concepcion M. Correction to: Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors. Plant Physiology. PMID 35333351 DOI: 10.1093/plphys/kiac120  0.737
2022 Hussain E, Romanowski A, Halliday KJ. PIF7 controls leaf cell proliferation through an AN3 substitution repression mechanism. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35086930 DOI: 10.1073/pnas.2115682119  0.775
2021 Krahmer J, Hindle M, Perby LK, Mogensen HK, Nielsen TH, Halliday KJ, VanOoijen G, LeBihan T, Millar AJ. The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana. Molecular & Cellular Proteomics : McP. 100172. PMID 34740825 DOI: 10.1016/j.mcpro.2021.100172  0.596
2021 Romanowski A, Furniss JJ, Hussain E, Halliday KJ. Phytochrome regulates cellular response plasticity and the basic molecular machinery of leaf development. Plant Physiology. PMID 33693822 DOI: 10.1093/plphys/kiab112  0.786
2021 Krahmer J, Abbas A, Mengin V, Ishihara H, Romanowski A, Furniss JJ, Moraes TA, Krohn N, Annunziata MG, Feil R, Alseekh S, Obata T, Fernie AR, Stitt M, Halliday KJ. Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany. PMID 33544130 DOI: 10.1093/jxb/erab038  0.754
2018 Krahmer J, Goralogia GS, Kubota A, Zardilis A, Johnson RS, Song YH, MacCoss MJ, LeBihan T, Halliday KJ, Imaizumi T, Millar AJ. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis. Febs Letters. PMID 30536871 DOI: 10.1002/1873-3468.13311  0.605
2018 Seaton DD, Toledo-Ortiz G, Ganpudi A, Kubota A, Imaizumi T, Halliday KJ. Dawn and photoperiod sensing by phytochrome A. Proceedings of the National Academy of Sciences of the United States of America. PMID 30254157 DOI: 10.1073/Pnas.1803398115  0.764
2018 Martín G, Rovira A, Veciana N, Soy J, Toledo-Ortiz G, Gommers CMM, Boix M, Henriques R, Minguet EG, Alabadí D, Halliday KJ, Leivar P, Monte E. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Current Biology : Cb. PMID 29337078 DOI: 10.1016/J.Cub.2017.12.021  0.773
2017 Krahmer J, Ganpudi A, Abbas A, Romanowski A, Halliday KJ. Phytochrome, metabolism and growth plasticity. Plant Physiology. PMID 29254984 DOI: 10.1104/Pp.17.01437  0.732
2016 Yang D, Seaton DD, Krahmer J, Halliday KJ. Photoreceptor effects on plant biomass, resource allocation, and metabolic state. Proceedings of the National Academy of Sciences of the United States of America. PMID 27330114 DOI: 10.1073/Pnas.1601309113  0.434
2016 Quint M, Delker C, Franklin KA, Wigge PA, Halliday KJ, van Zanten M. Molecular and genetic control of plant thermomorphogenesis. Nature Plants. 2: 15190. PMID 27250752 DOI: 10.1038/nplants.2015.190  0.418
2015 Flis A, Fernández AP, Zielinski T, Mengin V, Sulpice R, Stratford K, Hume A, Pokhilko A, Southern MM, Seaton DD, McWatters HG, Stitt M, Halliday KJ, Millar AJ. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biology. 5. PMID 26468131 DOI: 10.1098/Rsob.150042  0.602
2015 Voß U, Wilson MH, Kenobi K, Gould PD, Robertson FC, Peer WA, Lucas M, Swarup K, Casimiro I, Holman TJ, Wells DM, Péret B, Goh T, Fukaki H, Hodgman TC, ... ... Halliday KJ, et al. The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana. Nature Communications. 6: 7641. PMID 26144255 DOI: 10.1038/Ncomms8641  0.439
2015 Bou-Torrent J, Toledo-Ortiz G, Ortiz-Alcaide M, Cifuentes-Esquivel N, Halliday KJ, Martinez-García JF, Rodriguez-Concepcion M. Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors. Plant Physiology. 169: 1584-94. PMID 26082398 DOI: 10.1104/Pp.15.00552  0.791
2015 Seaton DD, Smith RW, Song YH, MacGregor DR, Stewart K, Steel G, Foreman J, Penfield S, Imaizumi T, Millar AJ, Halliday KJ. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Molecular Systems Biology. 11: 776. PMID 25600997 DOI: 10.15252/Msb.20145766  0.695
2015 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, De Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Correction: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth (Proc Natl Acad Sci USA (2014) 111 (E4127-E4136)) Proceedings of the National Academy of Sciences of the United States of America. 112: E2556. DOI: 10.1073/Pnas.1506983112  0.732
2014 Johansson H, Jones HJ, Foreman J, Hemsted JR, Stewart K, Grima R, Halliday KJ. Arabidopsis cell expansion is controlled by a photothermal switch. Nature Communications. 5: 4848. PMID 25258215 DOI: 10.1038/Ncomms5848  0.34
2014 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, de Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America. 111: E4127-36. PMID 25197087 DOI: 10.1073/Pnas.1410238111  0.782
2014 Toledo-Ortiz G, Johansson H, Lee KP, Bou-Torrent J, Stewart K, Steel G, Rodríguez-Concepción M, Halliday KJ. The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription. Plos Genetics. 10: e1004416. PMID 24922306 DOI: 10.1371/Journal.Pgen.1004416  0.797
2014 Zielinski T, Moore AM, Troup E, Halliday KJ, Millar AJ. Strengths and limitations of period estimation methods for circadian data. Plos One. 9: e96462. PMID 24809473 DOI: 10.1371/Journal.Pone.0096462  0.486
2014 Franklin KA, Toledo-Ortiz G, Pyott DE, Halliday KJ. Interaction of light and temperature signalling. Journal of Experimental Botany. 65: 2859-71. PMID 24569036 DOI: 10.1093/Jxb/Eru059  0.772
2014 Chew YH, Smith RW, Jones HJ, Seaton DD, Grima R, Halliday KJ. Mathematical models light up plant signaling. The Plant Cell. 26: 5-20. PMID 24481073 DOI: 10.1105/Tpc.113.120006  0.792
2013 MacGregor DR, Gould P, Foreman J, Griffiths J, Bird S, Page R, Stewart K, Steel G, Young J, Paszkiewicz K, Millar AJ, Halliday KJ, Hall AJ, Penfield S. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis. The Plant Cell. 25: 4391-404. PMID 24254125 DOI: 10.1105/Tpc.113.114959  0.619
2013 Keily J, MacGregor DR, Smith RW, Millar AJ, Halliday KJ, Penfield S. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock. The Plant Journal : For Cell and Molecular Biology. 76: 247-57. PMID 23909712 DOI: 10.1111/Tpj.12303  0.641
2013 Vaistij FE, Gan Y, Penfield S, Gilday AD, Dave A, He Z, Josse EM, Choi G, Halliday KJ, Graham IA. Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA. Proceedings of the National Academy of Sciences of the United States of America. 110: 10866-71. PMID 23754415 DOI: 10.1073/pnas.1301647110  0.307
2013 Gould PD, Ugarte N, Domijan M, Costa M, Foreman J, Macgregor D, Rose K, Griffiths J, Millar AJ, Finkenstädt B, Penfield S, Rand DA, Halliday KJ, Hall AJ. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology. 9: 650. PMID 23511208 DOI: 10.1038/Msb.2013.7  0.6
2012 Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Molecular Systems Biology. 8: 574. PMID 22395476 DOI: 10.1038/Msb.2012.6  0.634
2012 Chew YH, Wilczek AM, Williams M, Welch SM, Schmitt J, Halliday KJ. An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time. The New Phytologist. 194: 654-65. PMID 22352314 DOI: 10.1111/J.1469-8137.2012.04069.X  0.779
2012 Guerriero ML, Pokhilko A, Fernández AP, Halliday KJ, Millar AJ, Hillston J. Stochastic properties of the plant circadian clock. Journal of the Royal Society, Interface / the Royal Society. 9: 744-56. PMID 21880617 DOI: 10.1098/Rsif.2011.0378  0.633
2011 Griffiths J, Halliday K. Plant development: light exposure directs meristem fate. Current Biology : Cb. 21: R817-9. PMID 21996506 DOI: 10.1016/J.Cub.2011.08.054  0.493
2011 Josse EM, Gan Y, Bou-Torrent J, Stewart KL, Gilday AD, Jeffree CE, Vaistij FE, Martínez-García JF, Nagy F, Graham IA, Halliday KJ. A DELLA in disguise: SPATULA restrains the growth of the developing Arabidopsis seedling. The Plant Cell. 23: 1337-51. PMID 21478445 DOI: 10.1105/Tpc.110.082594  0.428
2011 Foreman J, White J, Graham I, Halliday K, Josse EM. Shedding light on flower development: phytochrome B regulates gynoecium formation in association with the transcription factor SPATULA. Plant Signaling & Behavior. 6: 471-6. PMID 21364315 DOI: 10.4161/psb.6.4.14496  0.332
2011 Foreman J, Johansson H, Hornitschek P, Josse EM, Fankhauser C, Halliday KJ. Light receptor action is critical for maintaining plant biomass at warm ambient temperatures. The Plant Journal : For Cell and Molecular Biology. 65: 441-52. PMID 21265897 DOI: 10.1111/J.1365-313X.2010.04434.X  0.393
2011 Chew YH, Halliday KJ. A stress-free walk from Arabidopsis to crops. Current Opinion in Biotechnology. 22: 281-6. PMID 21168324 DOI: 10.1016/j.copbio.2010.11.011  0.743
2010 Sidaway-Lee K, Josse EM, Brown A, Gan Y, Halliday KJ, Graham IA, Penfield S. SPATULA links daytime temperature and plant growth rate. Current Biology : Cb. 20: 1493-7. PMID 20705468 DOI: 10.1016/j.cub.2010.07.028  0.327
2009 Halliday KJ, Martínez-García JF, Josse EM. Integration of light and auxin signaling. Cold Spring Harbor Perspectives in Biology. 1: a001586. PMID 20457562 DOI: 10.1101/cshperspect.a001586  0.401
2009 Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Millar AJ. Prediction of photoperiodic regulators from quantitative gene circuit models. Cell. 139: 1170-9. PMID 20005809 DOI: 10.1016/J.Cell.2009.11.029  0.638
2008 Josse EM, Foreman J, Halliday KJ. Paths through the phytochrome network. Plant, Cell & Environment. 31: 667-78. PMID 18266901 DOI: 10.1111/j.1365-3040.2008.01794.x  0.371
2007 Salisbury FJ, Hall A, Grierson CS, Halliday KJ. Phytochrome coordinates Arabidopsis shoot and root development. The Plant Journal : For Cell and Molecular Biology. 50: 429-38. PMID 17419844 DOI: 10.1111/J.1365-313X.2007.03059.X  0.382
2007 Penfield S, Graham I, Halliday K. Control of seed dormancy and germination by environmental signals Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 146: S274. DOI: 10.1016/J.Cbpa.2007.01.619  0.319
2007 Halliday K, Hall A, Grierson C, Salisbury F. Phytochrome coordination of shoot and root development Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 146: S226. DOI: 10.1016/J.Cbpa.2007.01.496  0.304
2006 Penfield S, Gilday AD, Halliday KJ, Graham IA. DELLA-mediated cotyledon expansion breaks coat-imposed seed dormancy. Current Biology : Cb. 16: 2366-70. PMID 17141619 DOI: 10.1016/j.cub.2006.10.057  0.318
2005 Penfield S, Josse EM, Kannangara R, Gilday AD, Halliday KJ, Graham IA. Cold and light control seed germination through the bHLH transcription factor SPATULA. Current Biology : Cb. 15: 1998-2006. PMID 16303558 DOI: 10.1016/j.cub.2005.11.010  0.407
2005 Heggie L, Halliday KJ. The highs and lows of plant life: temperature and light interactions in development. The International Journal of Developmental Biology. 49: 675-87. PMID 16096974 DOI: 10.1387/ijdb.041926lh  0.383
2004 Halliday KJ. Plant hormones: the interplay of brassinosteroids and auxin. Current Biology : Cb. 14: R1008-10. PMID 15589137 DOI: 10.1016/j.cub.2004.11.025  0.321
2003 Halliday KJ, Fankhauser C. Phytochrome-hormonal signalling networks. The New Phytologist. 157: 449-463. PMID 33873406 DOI: 10.1046/j.1469-8137.2003.00689.x  0.341
2003 Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ. The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. The Plant Cell. 15: 2719-29. PMID 14555691 DOI: 10.1105/Tpc.013730  0.637
2003 Halliday KJ, Whitelam GC. Changes in photoperiod or temperature alter the functional relationships between phytochromes and reveal roles for phyD and phyE. Plant Physiology. 131: 1913-20. PMID 12692350 DOI: 10.1104/pp.102.018135  0.302
2003 Franklin KA, Praekelt U, Stoddart WM, Billingham OE, Halliday KJ, Whitelam GC. Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiology. 131: 1340-6. PMID 12644683 DOI: 10.1104/pp.102.015487  0.435
2003 Halliday KJ, Salter MG, Thingnaes E, Whitelam GC. Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integrator FT. The Plant Journal : For Cell and Molecular Biology. 33: 875-85. PMID 12609029  0.316
2003 Halliday KJ, Fankhauser C. Phytochrome-hormonal signalling networks New Phytologist. 157: 449-463. DOI: 10.1046/J.1469-8137.2003.00689.X  0.374
2000 Huq E, Kang Y, Halliday KJ, Qin M, Quail PH. SRL1: a new locus specific to the phyB-signaling pathway in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 23: 461-70. PMID 10972872 DOI: 10.1046/J.1365-313X.2000.00810.X  0.726
1999 Halliday KJ, Hudson M, Ni M, Qin M, Quail PH. poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein. Proceedings of the National Academy of Sciences of the United States of America. 96: 5832-7. PMID 10318970 DOI: 10.1073/Pnas.96.10.5832  0.753
1999 Whitelam GC, Halliday KJ. Photomophogenesis: Phytochrome takes a partner! Current Biology : Cb. 9: R225-7. PMID 10209091 DOI: 10.1016/S0960-9822(99)80135-3  0.301
1999 Halliday KJ, Bolle C, Chua NH, Whitelam GC. Overexpression of rice phytochrome A partially complements phytochrome B deficiency in Arabidopsis. Planta. 207: 401-9. PMID 9951735 DOI: 10.1007/S004250050498  0.351
1998 Halliday KJ, Thomas B, Whitelam GC. Expression of heterologous phytochromes A, B or C in transgenic tobacco plants alters vegetative development and flowering time. The Plant Journal : For Cell and Molecular Biology. 12: 1079-90. PMID 9418049 DOI: 10.1046/j.1365-313X.1997.12051079.x  0.357
1997 Devlin PF, Halliday KJ, Harberd NP, Whitelam GC. The rosette habit of Arabidopsis thaliana is dependent upon phytochrome action: novel phytochromes control internode elongation and flowering time. The Plant Journal : For Cell and Molecular Biology. 10: 1127-34. PMID 9011093 DOI: 10.1046/j.1365-313X.1996.10061127.x  0.347
1997 Halliday K, Devlin PF, Whitelam GC, Hanhart C, Koornneef M. The ELONGATED gene of Arabidopsis acts independently of light and gibberellins in the control of elongation growth. The Plant Journal : For Cell and Molecular Biology. 9: 305-12. PMID 8919908 DOI: 10.1046/J.1365-313X.1996.09030305.X  0.323
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