Karen Halliday - Publications

University of Edinburgh, Edinburgh, Scotland, United Kingdom 

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Romanowski A, Furniss JJ, Hussain E, Halliday KJ. Phytochrome regulates cellular response plasticity and the basic molecular machinery of leaf development. Plant Physiology. PMID 33693822 DOI: 10.1093/plphys/kiab112  0.32
2021 Krahmer J, Abbas A, Mengin V, Ishihara H, Romanowski A, Furniss JJ, Moraes TA, Krohn N, Annunziata MG, Feil R, Alseekh S, Obata T, Fernie AR, Stitt M, Halliday KJ. Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany. PMID 33544130 DOI: 10.1093/jxb/erab038  0.32
2018 Krahmer J, Goralogia GS, Kubota A, Zardilis A, Johnson RS, Song YH, MacCoss MJ, LeBihan T, Halliday KJ, Imaizumi T, Millar AJ. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis. Febs Letters. PMID 30536871 DOI: 10.1002/1873-3468.13311  0.6
2018 Seaton DD, Toledo-Ortiz G, Ganpudi A, Kubota A, Imaizumi T, Halliday KJ. Dawn and photoperiod sensing by phytochrome A. Proceedings of the National Academy of Sciences of the United States of America. PMID 30254157 DOI: 10.1073/pnas.1803398115  0.6
2018 Martín G, Rovira A, Veciana N, Soy J, Toledo-Ortiz G, Gommers CMM, Boix M, Henriques R, Minguet EG, Alabadí D, Halliday KJ, Leivar P, Monte E. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Current Biology : Cb. PMID 29337078 DOI: 10.1016/j.cub.2017.12.021  0.6
2017 Krahmer J, Ganpudi A, Abbas A, Romanowski A, Halliday KJ. Phytochrome, metabolism and growth plasticity. Plant Physiology. PMID 29254984 DOI: 10.1104/pp.17.01437  0.6
2016 Yang D, Seaton DD, Krahmer J, Halliday KJ. Photoreceptor effects on plant biomass, resource allocation, and metabolic state. Proceedings of the National Academy of Sciences of the United States of America. PMID 27330114 DOI: 10.1073/pnas.1601309113  0.44
2016 Quint M, Delker C, Franklin KA, Wigge PA, Halliday KJ, van Zanten M. Molecular and genetic control of plant thermomorphogenesis. Nature Plants. 2: 15190. PMID 27250752 DOI: 10.1038/nplants.2015.190  0.52
2015 Flis A, Fernández AP, Zielinski T, Mengin V, Sulpice R, Stratford K, Hume A, Pokhilko A, Southern MM, Seaton DD, McWatters HG, Stitt M, Halliday KJ, Millar AJ. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biology. 5. PMID 26468131 DOI: 10.1098/rsob.150042  0.44
2015 Voß U, Wilson MH, Kenobi K, Gould PD, Robertson FC, Peer WA, Lucas M, Swarup K, Casimiro I, Holman TJ, Wells DM, Péret B, Goh T, Fukaki H, Hodgman TC, ... ... Halliday KJ, et al. The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana. Nature Communications. 6: 7641. PMID 26144255 DOI: 10.1038/Ncomms8641  0.44
2015 Bou-Torrent J, Toledo-Ortiz G, Ortiz-Alcaide M, Cifuentes-Esquivel N, Halliday KJ, Martinez-García JF, Rodriguez-Concepcion M. Regulation of Carotenoid Biosynthesis by Shade Relies on Specific Subsets of Antagonistic Transcription Factors and Cofactors. Plant Physiology. 169: 1584-94. PMID 26082398 DOI: 10.1104/pp.15.00552  0.6
2015 Seaton DD, Smith RW, Song YH, MacGregor DR, Stewart K, Steel G, Foreman J, Penfield S, Imaizumi T, Millar AJ, Halliday KJ. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Molecular Systems Biology. 11: 776. PMID 25600997 DOI: 10.15252/Msb.20145766  0.44
2015 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, De Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Correction: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth (Proc Natl Acad Sci USA (2014) 111 (E4127-E4136)) Proceedings of the National Academy of Sciences of the United States of America. 112: E2556. DOI: 10.1073/pnas.1506983112  0.44
2014 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, de Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America. 111: E4127-36. PMID 25197087 DOI: 10.1073/pnas.1410238111  1
2014 Toledo-Ortiz G, Johansson H, Lee KP, Bou-Torrent J, Stewart K, Steel G, Rodríguez-Concepción M, Halliday KJ. The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription. Plos Genetics. 10: e1004416. PMID 24922306 DOI: 10.1371/journal.pgen.1004416  0.6
2014 Zielinski T, Moore AM, Troup E, Halliday KJ, Millar AJ. Strengths and limitations of period estimation methods for circadian data. Plos One. 9: e96462. PMID 24809473 DOI: 10.1371/journal.pone.0096462  0.44
2014 Franklin KA, Toledo-Ortiz G, Pyott DE, Halliday KJ. Interaction of light and temperature signalling. Journal of Experimental Botany. 65: 2859-71. PMID 24569036 DOI: 10.1093/jxb/eru059  0.6
2014 Chew YH, Smith RW, Jones HJ, Seaton DD, Grima R, Halliday KJ. Mathematical models light up plant signaling. The Plant Cell. 26: 5-20. PMID 24481073 DOI: 10.1105/Tpc.113.120006  0.44
2013 MacGregor DR, Gould P, Foreman J, Griffiths J, Bird S, Page R, Stewart K, Steel G, Young J, Paszkiewicz K, Millar AJ, Halliday KJ, Hall AJ, Penfield S. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis. The Plant Cell. 25: 4391-404. PMID 24254125 DOI: 10.1105/Tpc.113.114959  0.44
2013 Keily J, MacGregor DR, Smith RW, Millar AJ, Halliday KJ, Penfield S. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock. The Plant Journal : For Cell and Molecular Biology. 76: 247-57. PMID 23909712 DOI: 10.1111/Tpj.12303  0.44
2013 Vaistij FE, Gan Y, Penfield S, Gilday AD, Dave A, He Z, Josse EM, Choi G, Halliday KJ, Graham IA. Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA. Proceedings of the National Academy of Sciences of the United States of America. 110: 10866-71. PMID 23754415 DOI: 10.1073/pnas.1301647110  0.44
2013 Costa MJ, Finkenstädt B, Roche V, Lévi F, Gould PD, Foreman J, Halliday K, Hall A, Rand DA. Inference on periodicity of circadian time series. Biostatistics (Oxford, England). 14: 792-806. PMID 23743206 DOI: 10.1093/biostatistics/kxt020  0.44
2013 Gould PD, Ugarte N, Domijan M, Costa M, Foreman J, Macgregor D, Rose K, Griffiths J, Millar AJ, Finkenstädt B, Penfield S, Rand DA, Halliday KJ, Hall AJ. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology. 9: 650. PMID 23511208 DOI: 10.1038/Msb.2013.7  0.44
2012 Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Molecular Systems Biology. 8: 574. PMID 22395476 DOI: 10.1038/msb.2012.6  0.44
2012 Chew YH, Wilczek AM, Williams M, Welch SM, Schmitt J, Halliday KJ. An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time. The New Phytologist. 194: 654-65. PMID 22352314 DOI: 10.1111/J.1469-8137.2012.04069.X  0.44
2012 Guerriero ML, Pokhilko A, Fernández AP, Halliday KJ, Millar AJ, Hillston J. Stochastic properties of the plant circadian clock. Journal of the Royal Society, Interface / the Royal Society. 9: 744-56. PMID 21880617 DOI: 10.1098/rsif.2011.0378  0.44
2011 Josse EM, Gan Y, Bou-Torrent J, Stewart KL, Gilday AD, Jeffree CE, Vaistij FE, Martínez-García JF, Nagy F, Graham IA, Halliday KJ. A DELLA in disguise: SPATULA restrains the growth of the developing Arabidopsis seedling. The Plant Cell. 23: 1337-51. PMID 21478445 DOI: 10.1105/tpc.110.082594  0.44
2011 Chew YH, Halliday KJ. A stress-free walk from Arabidopsis to crops. Current Opinion in Biotechnology. 22: 281-6. PMID 21168324 DOI: 10.1016/j.copbio.2010.11.011  1
2010 Moran CN, Halliday KJ. Fruit development: new directions for an old pathway. Current Biology : Cb. 20: R1081-3. PMID 21172630 DOI: 10.1016/J.Cub.2010.10.054  0.44
2010 Sidaway-Lee K, Josse EM, Brown A, Gan Y, Halliday KJ, Graham IA, Penfield S. SPATULA links daytime temperature and plant growth rate. Current Biology : Cb. 20: 1493-7. PMID 20705468 DOI: 10.1016/j.cub.2010.07.028  0.44
2010 Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, et al. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. Plos Genetics. 6: e1000891. PMID 20386741 DOI: 10.1371/Journal.Pgen.1000891  0.44
2010 Penfield S, Josse EM, Halliday KJ. A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy. Plant Molecular Biology. 73: 89-95. PMID 19911288 DOI: 10.1007/s11103-009-9571-1  0.44
2009 Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Millar AJ. Prediction of photoperiodic regulators from quantitative gene circuit models. Cell. 139: 1170-9. PMID 20005809 DOI: 10.1016/j.cell.2009.11.029  0.44
2006 Penfield S, Gilday AD, Halliday KJ, Graham IA. DELLA-mediated cotyledon expansion breaks coat-imposed seed dormancy. Current Biology : Cb. 16: 2366-70. PMID 17141619 DOI: 10.1016/j.cub.2006.10.057  0.44
2005 Penfield S, Josse EM, Kannangara R, Gilday AD, Halliday KJ, Graham IA. Cold and light control seed germination through the bHLH transcription factor SPATULA. Current Biology : Cb. 15: 1998-2006. PMID 16303558 DOI: 10.1016/j.cub.2005.11.010  0.44
2003 Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ. The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. The Plant Cell. 15: 2719-29. PMID 14555691 DOI: 10.1105/tpc.013730  0.44
2003 Kanyuka K, Praekelt U, Franklin KA, Billingham OE, Hooley R, Whitelam GC, Halliday KJ. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. The Plant Journal : For Cell and Molecular Biology. 35: 57-70. PMID 12834402  0.52
2003 Franklin KA, Praekelt U, Stoddart WM, Billingham OE, Halliday KJ, Whitelam GC. Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiology. 131: 1340-6. PMID 12644683 DOI: 10.1104/pp.102.015487  0.52
2000 Huq E, Kang Y, Halliday KJ, Qin M, Quail PH. SRL1: a new locus specific to the phyB-signaling pathway in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 23: 461-70. PMID 10972872 DOI: 10.1046/J.1365-313X.2000.00810.X  0.88
1999 Halliday KJ, Hudson M, Ni M, Qin M, Quail PH. poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein. Proceedings of the National Academy of Sciences of the United States of America. 96: 5832-7. PMID 10318970  0.88
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