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Robert A Martienssen - Publications

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
Heterochromatin Reprogramming, Small Interfering RNA, Germ Cell Fate

134 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wear EE, Song J, Zynda GJ, Mickelson-Young L, LeBlanc C, Lee TJ, Deppong DO, Allen GC, Martienssen RA, Vaughn MW, Hanley-Bowdoin L, Thompson WF. Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. Plos Genetics. 16: e1008623. PMID 33052904 DOI: 10.1371/journal.pgen.1008623  0.36
2020 Borg M, Jacob Y, Susaki D, LeBlanc C, Buendía D, Axelsson E, Kawashima T, Voigt P, Boavida L, Becker J, Higashiyama T, Martienssen R, Berger F. Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology. PMID 32393884 DOI: 10.1038/S41556-020-0515-Y  0.56
2020 Wheeler E, Brooks AM, Concia L, Vera D, Wear EE, LeBlanc C, Ramu U, Vaughn MW, Bass H, Martienssen R, Thompson WF, Hanley-Bowdoin L. Arabidopsis DNA replication initiates in intergenic, AT-rich open chromatin. Plant Physiology. PMID 32205451 DOI: 10.1104/Pp.19.01520  0.36
2019 Bhattacharjee S, Roche B, Martienssen RA. RNA-induced initiation of transcriptional silencing (RITS) complex structure and function. Rna Biology. 1-14. PMID 31213126 DOI: 10.1080/15476286.2019.1621624  0.01
2018 Ikeda Y, Nishihama R, Yamaoka S, Arteaga-Vazquez MA, Aguilar-Cruz A, Grimanelli D, Pogorelcnik R, Martienssen RA, Yamato KT, Kohchi T, Hirayama T, Mathieu O. Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation. Plant & Cell Physiology. PMID 30102384 DOI: 10.1093/Pcp/Pcy161  0.01
2018 Choi K, Zhao X, Tock AJ, Lambing C, Underwood CJ, Hardcastle TJ, Serra H, Kim J, Cho HS, Kim J, Ziolkowski PA, Yelina NE, Hwang I, Martienssen RA, Henderson IR. Nucleosomes and DNA methylation shape meiotic DSB frequency intransposons and gene regulatory regions. Genome Research. PMID 29530928 DOI: 10.1101/Gr.225599.117  0.01
2018 Underwood CJ, Choi K, Lambing C, Zhao X, Serra H, Borges F, Simorowski J, Ernst E, Jacob Y, Henderson IR, Martienssen RA. Epigenetic activation of meiotic recombination nearcentromeres via loss of H3K9me2 and non-CG DNA methylation. Genome Research. PMID 29530927 DOI: 10.1101/Gr.227116.117  0.08
2018 Borges F, Parent JS, van Ex F, Wolff P, Martínez G, Köhler C, Martienssen RA. Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nature Genetics. PMID 29335544 DOI: 10.1038/S41588-017-0032-5  0.01
2018 Concia L, Brooks AM, Wheeler E, Zynda G, Wear EE, LeBlanc C, Song J, Lee TJ, Pascuzzi PE, Martienssen R, Vaughn MW, Thompson W, Hanley-Bowdoin L. Genome-Wide Analysis of the Arabidopsis thaliana Replication Timing Program. Plant Physiology. PMID 29301956 DOI: 10.1104/Pp.17.01537  0.01
2017 Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, ... Martienssen RA, et al. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell. 171: 287-304.e15. PMID 28985561 DOI: 10.1016/J.Cell.2017.09.030  0.01
2017 Wear EE, Song J, Zynda G, LeBlanc C, Lee TJ, Mickelson-Young L, Concia L, Mulvaney P, Szymanski ES, Allen GC, Martienssen R, Vaughn MW, Hanley-Bowdoin L, Thompson W. Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. The Plant Cell. PMID 28842533 DOI: 10.1105/Tpc.17.00037  0.04
2017 Chang AY, Castel SE, Ernst E, Kim HS, Martienssen RA. The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports. 19: 2477-2489. PMID 28636937 DOI: 10.1016/J.Celrep.2017.05.086  0.01
2017 Underwood CJ, Henderson IR, Martienssen RA. Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology. 36: 135-141. PMID 28343122 DOI: 10.1016/J.Pbi.2017.03.002  0.04
2017 Ziolkowski PA, Underwood CJ, Lambing C, Martinez-Garcia M, Lawrence EJ, Ziolkowska L, Griffin C, Choi K, Franklin FC, Martienssen RA, Henderson IR. Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes & Development. PMID 28223312 DOI: 10.1101/Gad.295501.116  0.04
2017 Ingouff M, Selles B, Michaud C, Vu TM, Berger F, Schorn AJ, Autran D, Van Durme M, Nowack MK, Martienssen RA, Grimanelli D. Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes & Development. PMID 28115468 DOI: 10.1101/Gad.289397.116  0.04
2016 Roche B, Arcangioli B, Martienssen RA. RNA interference is essential for cellular quiescence. Science (New York, N.Y.). 354. PMID 27738016 DOI: 10.1126/Science.Aah5651  0.01
2016 Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Hoda A, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, ... Martienssen R, et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27436134 DOI: 10.1111/Tpj.13262  0.48
2016 Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V. The Arabidopsis thaliana mobilome and its impact at the species level. Elife. 5. PMID 27258693 DOI: 10.7554/Elife.15716  0.01
2016 Pichugina T, Sugawara T, Kaykov A, Schierding W, Masuda K, Uewaki J, Grand RS, Allison JR, Martienssen RA, Nurse P, Ueno M, O'Sullivan JM. A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Scientific Reports. 6: 18757. PMID 26729303 DOI: 10.1038/Srep18757  0.01
2016 Quadrana L, Silveira AB, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V. Author response: The Arabidopsis thaliana mobilome and its impact at the species level Elife. DOI: 10.7554/Elife.15716.046  0.48
2015 Ren J, Castel SE, Martienssen RA. Dicer in action at replication-transcription collisions. Molecular & Cellular Oncology. 2: e991224. PMID 27308471 DOI: 10.4161/23723556.2014.991224  0.08
2015 Borges F, Martienssen RA. The expanding world of small RNAs in plants. Nature Reviews. Molecular Cell Biology. 16: 727-41. PMID 26530390 DOI: 10.1038/Nrm4085  0.04
2015 Ong-Abdullah M, Ordway JM, Jiang N, Ooi SE, Kok SY, Sarpan N, Azimi N, Hashim AT, Ishak Z, Rosli SK, Malike FA, Bakar NA, Marjuni M, Abdullah N, Yaakub Z, ... Martienssen RA, et al. Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature. 525: 533-7. PMID 26352475 DOI: 10.1038/Nature15365  0.01
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2  0.01
2015 Underwood CJ, Martienssen RA. Argonautes team up to silence transposable elements in Arabidopsis. The Embo Journal. 34: 579-80. PMID 25630704 DOI: 10.15252/Embj.201590971  0.01
2014 Castel SE, Ren J, Bhattacharjee S, Chang AY, Sánchez M, Valbuena A, Antequera F, Martienssen RA. Dicer promotes transcription termination at sites of replication stress to maintain genome stability. Cell. 159: 572-83. PMID 25417108 DOI: 10.1016/J.Cell.2014.09.031  0.01
2014 Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, Marjuni M, Chan PL, Ithnin M, Manaf MA, Nagappan J, Chan KL, Rosli R, Halim MA, Azizi N, ... Martienssen RA, et al. The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications. 5: 4106. PMID 24978855 DOI: 10.1038/Ncomms5106  0.01
2014 Thiebaut F, Grativol C, Tanurdzic M, Carnavale-Bottino M, Vieira T, Motta MR, Rojas C, Vincentini R, Chabregas SM, Hemerly AS, Martienssen RA, Ferreira PC. Differential sRNA regulation in leaves and roots of sugarcane under water depletion. Plos One. 9: e93822. PMID 24695493 DOI: 10.1371/Journal.Pone.0093822  0.01
2014 Heard E, Martienssen RA. Transgenerational epigenetic inheritance: myths and mechanisms. Cell. 157: 95-109. PMID 24679529 DOI: 10.1016/J.Cell.2014.02.045  0.04
2014 Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA. miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature. 508: 411-5. PMID 24670663 DOI: 10.1038/Nature13069  0.01
2014 Jacob Y, Bergamin E, Donoghue MT, Mongeon V, LeBlanc C, Voigt P, Underwood CJ, Brunzelle JS, Michaels SD, Reinberg D, Couture JF, Martienssen RA. Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science (New York, N.Y.). 343: 1249-53. PMID 24626927 DOI: 10.1126/Science.1248357  0.24
2014 Kuscu C, Zaratiegui M, Kim HS, Wah DA, Martienssen RA, Schalch T, Joshua-Tor L. CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proceedings of the National Academy of Sciences of the United States of America. 111: 1795-800. PMID 24449894 DOI: 10.1073/Pnas.1313096111  0.01
2013 Borges F, Martienssen RA. Establishing epigenetic variation during genome reprogramming. Rna Biology. 10: 490-4. PMID 23774895 DOI: 10.4161/Rna.24085  0.01
2013 Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA. The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research. 23: 1651-62. PMID 23739895 DOI: 10.1101/Gr.153510.112  0.01
2013 Castel SE, Martienssen RA. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nature Reviews. Genetics. 14: 100-12. PMID 23329111 DOI: 10.1038/Nrg3355  0.01
2012 Borges F, Calarco JP, Martienssen RA. Reprogramming the epigenome in Arabidopsis pollen. Cold Spring Harbor Symposia On Quantitative Biology. 77: 1-5. PMID 23619015 DOI: 10.1101/Sqb.2013.77.014969  0.04
2012 Calarco JP, Martienssen RA. Imprinting: DNA methyltransferases illuminate reprogramming. Current Biology : Cb. 22: R929-31. PMID 23137693 DOI: 10.1016/J.Cub.2012.09.030  0.08
2012 Borges F, Gardner R, Lopes T, Calarco JP, Boavida LC, Slotkin RK, Martienssen RA, Becker JD. FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant Methods. 8: 44. PMID 23075219 DOI: 10.1186/1746-4811-8-44  0.12
2012 Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell. 151: 194-205. PMID 23000270 DOI: 10.1016/J.Cell.2012.09.001  0.16
2012 Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636  0.48
2012 Ren J, Martienssen RA. Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny. The Embo Journal. 31: 3237-8. PMID 22705945 DOI: 10.1038/Emboj.2012.172  0.04
2012 Jacob Y, Martienssen R. Molecular biology. All packed up and ready to go. Science (New York, N.Y.). 336: 1391-2. PMID 22700909 DOI: 10.1126/Science.1224272  0.56
2012 Stillman B, Grodzicker T, Martienssen R, Stewart D. The Biology of Plants Cold Spring Harbor Symposia On Quantitative Biology. DOI: 10.1101/Sqb.2012.77.Fm  0.32
2011 Zaratiegui M, Castel SE, Irvine DV, Kloc A, Ren J, Li F, de Castro E, Marín L, Chang AY, Goto D, Cande WZ, Antequera F, Arcangioli B, Martienssen RA. RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature. 479: 135-8. PMID 22002604 DOI: 10.1038/Nature10501  0.04
2011 Van Ex F, Jacob Y, Martienssen RA. Multiple roles for small RNAs during plant reproduction. Current Opinion in Plant Biology. 14: 588-93. PMID 21807552 DOI: 10.1016/J.Pbi.2011.07.003  0.44
2011 Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, ... ... Martienssen R, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/Science.1203357  0.48
2011 Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD. MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany. 62: 1611-20. PMID 21357774 DOI: 10.1093/Jxb/Erq452  0.2
2011 Calarco JP, Martienssen RA. Genome reprogramming and small interfering RNA in the Arabidopsis germline. Current Opinion in Genetics & Development. 21: 134-9. PMID 21330131 DOI: 10.1016/J.Gde.2011.01.014  0.04
2011 Jacob Y, Martienssen RA. Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current Biology : Cb. 21: R20-2. PMID 21215930 DOI: 10.1016/J.Cub.2010.11.052  0.92
2011 Zaratiegui M, Vaughn MW, Irvine DV, Goto D, Watt S, Bähler J, Arcangioli B, Martienssen RA. CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature. 469: 112-5. PMID 21151105 DOI: 10.1038/Nature09608  0.01
2010 Creasey KM, Martienssen RA. Germline reprogramming of heterochromatin in plants. Cold Spring Harbor Symposia On Quantitative Biology. 75: 269-74. PMID 21502413 DOI: 10.1101/Sqb.2010.75.064  0.01
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/Gbe/Evq012  0.32
2010 Martienssen RA. Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. The New Phytologist. 186: 46-53. PMID 20409176 DOI: 10.1111/J.1469-8137.2010.03193.X  0.01
2010 Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature. 464: 628-32. PMID 20208518 DOI: 10.1038/nature08828  0.2
2009 Schwab R, Maizel A, Ruiz-Ferrer V, Garcia D, Bayer M, Crespi M, Voinnet O, Martienssen RA. Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. Plos One. 4: e5980. PMID 19543387 DOI: 10.1371/Journal.Pone.0005980  0.08
2009 Irvine DV, Goto DB, Vaughn MW, Nakaseko Y, McCombie WR, Yanagida M, Martienssen R. Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome Research. 19: 1077-83. PMID 19423874 DOI: 10.1101/Gr.089318.108  0.36
2009 Slotkin RK, Vaughn M, Borges F, Tanurdzić M, Becker JD, Feijó JA, Martienssen RA. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell. 136: 461-72. PMID 19203581 DOI: 10.1016/j.cell.2008.12.038  0.08
2008 Martienssen RA, Kloc A, Slotkin RK, Tanurdzić M. Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor Symposia On Quantitative Biology. 73: 265-71. PMID 19329575 DOI: 10.1101/Sqb.2008.73.062  0.28
2008 Finigan P, Martienssen RA. Nucleolar dominance and DNA methylation directed by small interfering RNA. Molecular Cell. 32: 753-4. PMID 19111654 DOI: 10.1016/J.Molcel.2008.12.006  0.01
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  0.08
2008 Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA. Epigenomic consequences of immortalized plant cell suspension culture. Plos Biology. 6: 2880-95. PMID 19071958 DOI: 10.1371/Journal.Pbio.0060302  0.08
2008 Li F, Huarte M, Zaratiegui M, Vaughn MW, Shi Y, Martienssen R, Cande WZ. Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell. 135: 272-83. PMID 18957202 DOI: 10.1016/J.Cell.2008.08.036  0.36
2008 Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R. Kismeth: analyzer of plant methylation states through bisulfite sequencing. Bmc Bioinformatics. 9: 371. PMID 18786255 DOI: 10.1186/1471-2105-9-371  0.12
2007 Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA. Epigenetic natural variation in Arabidopsis thaliana. Plos Biology. 5: e174. PMID 17579518 DOI: 10.1371/Journal.Pbio.0050174  0.12
2007 Boccara M, Sarazin A, Billoud B, Jolly V, Martienssen R, Baulcombe D, Colot V. New approaches for the analysis of Arabidopsis thaliana small RNAs. Biochimie. 89: 1252-6. PMID 17562352 DOI: 10.1016/J.Biochi.2007.04.011  0.48
2007 Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nature Reviews. Genetics. 8: 272-85. PMID 17363976 DOI: 10.1038/Nrg2072  0.36
2007 Zaratiegui M, Irvine DV, Martienssen RA. Noncoding RNAs and gene silencing. Cell. 128: 763-76. PMID 17320512 DOI: 10.1016/J.Cell.2007.02.016  0.01
2006 Locke SM, Martienssen RA. Slicing and spreading of heterochromatic silencing by RNA interference. Cold Spring Harbor Symposia On Quantitative Biology. 71: 497-503. PMID 17381332 DOI: 10.1101/Sqb.2006.71.062  0.01
2006 Irvine DV, Zaratiegui M, Tolia NH, Goto DB, Chitwood DH, Vaughn MW, Joshua-Tor L, Martienssen RA. Argonaute slicing is required for heterochromatic silencing and spreading. Science (New York, N.Y.). 313: 1134-7. PMID 16931764 DOI: 10.1126/Science.1128813  0.01
2006 Ronemus M, Vaughn MW, Martienssen RA. MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. The Plant Cell. 18: 1559-74. PMID 16798886 DOI: 10.1105/Tpc.106.042127  0.04
2006 Garcia D, Collier SA, Byrne ME, Martienssen RA. Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Current Biology : Cb. 16: 933-8. PMID 16682355 DOI: 10.1016/J.Cub.2006.03.064  0.01
2006 Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. The Plant Cell. 18: 574-85. PMID 16399802 DOI: 10.1105/Tpc.105.039032  0.32
2005 May BP, Lippman ZB, Fang Y, Spector DL, Martienssen RA. Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. Plos Genetics. 1: e79. PMID 16389298 DOI: 10.1371/Journal.Pgen.0010079  0.2
2005 Lippman Z, Gendrel AV, Colot V, Martienssen R. Profiling DNA methylation patterns using genomic tiling microarrays. Nature Methods. 2: 219-24. PMID 16163803 DOI: 10.1038/Nmeth0305-219  0.68
2005 Gendrel AV, Lippman Z, Martienssen R, Colot V. Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods. 2: 213-8. PMID 16163802 DOI: 10.1038/Nmeth0305-213  0.68
2005 Nakayama N, Arroyo JM, Simorowski J, May B, Martienssen R, Irish VF. Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens. The Plant Cell. 17: 2486-506. PMID 16055634 DOI: 10.1105/Tpc.105.033985  0.44
2005 Vollbrecht E, Springer PS, Goh L, Buckler ES, Martienssen R. Architecture of floral branch systems in maize and related grasses. Nature. 436: 1119-26. PMID 16041362 DOI: 10.1038/Nature03892  0.32
2005 Martienssen RA, Zaratiegui M, Goto DB. RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends in Genetics : Tig. 21: 450-6. PMID 15979194 DOI: 10.1016/J.Tig.2005.06.005  0.01
2005 Kidner CA, Martienssen RA. The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Developmental Biology. 280: 504-17. PMID 15882589 DOI: 10.1016/J.Ydbio.2005.01.031  0.01
2005 Martienssen RA, Doerge RW, Colot V. Epigenomic mapping in Arabidopsis using tiling microarrays Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 13: 299-308. PMID 15868423 DOI: 10.1007/S10577-005-1507-2  0.12
2005 Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research. 15: 496-504. PMID 15805491 DOI: 10.1101/Gr.3239105  0.04
2005 Vaughn MW, Martienssen RA. Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Molecular Cell. 17: 754-6. PMID 15780931 DOI: 10.1016/J.Molcel.2005.03.003  0.12
2005 Tanurdžić M, Doerge R, Martienssen R. Microarrays: Design, analysis, and applications in functional genomics Archive of Oncology. 13: 124-125. DOI: 10.2298/A000503124T  0.32
2004 Martienssen R, Lippman Z, May B, Ronemus M, Vaughn MW. Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor Symposia On Quantitative Biology. 69: 371-380. PMID 16117670 DOI: 10.1101/Sqb.2004.69.371  0.68
2004 Lippman Z, Martienssen R. The role of RNA interference in heterochromatic silencing. Nature. 431: 364-70. PMID 15372044 DOI: 10.1038/Nature02875  0.68
2004 Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R. Role of transposable elements in heterochromatin and epigenetic control. Nature. 430: 471-6. PMID 15269773 DOI: 10.1038/Nature02651  0.68
2004 Martienssen RA, Rabinowicz PD, O'Shaughnessy A, McCombie WR. Sequencing the maize genome. Current Opinion in Plant Biology. 7: 102-7. PMID 15003207 DOI: 10.1016/J.Pbi.2004.01.010  0.04
2004 Kidner CA, Martienssen RA. Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature. 428: 81-4. PMID 14999284 DOI: 10.1038/Nature02366  0.01
2004 Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature. 427: 164-7. PMID 14712277 DOI: 10.1038/Nature02269  0.32
2003 Lippman Z, May B, Yordan C, Singer T, Martienssen R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. Plos Biology. 1: E67. PMID 14691539 DOI: 10.1371/Journal.Pbio.0000067  0.68
2003 Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR. Maize genome sequencing by methylation filtration. Science (New York, N.Y.). 302: 2115-7. PMID 14684820 DOI: 10.1126/Science.1091265  0.01
2003 Rabinowicz PD, Palmer LE, May BP, Hemann MT, Lowe SW, McCombie WR, Martienssen RA. Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research. 13: 2658-64. PMID 14656970 DOI: 10.1101/Gr.1784803  0.08
2003 Song JJ, Liu J, Tolia NH, Schneiderman J, Smith SK, Martienssen RA, Hannon GJ, Joshua-Tor L. The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nature Structural Biology. 10: 1026-32. PMID 14625589 DOI: 10.1038/Nsb1016  0.01
2003 Martienssen RA. Maintenance of heterochromatin by RNA interference of tandem repeats. Nature Genetics. 35: 213-4. PMID 14593407 DOI: 10.1038/Ng1252  0.01
2003 Byrne ME, Kidner CA, Martienssen RA. Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development. 13: 551-7. PMID 14550423 DOI: 10.1016/J.Gde.2003.08.008  0.01
2003 May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R. Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America. 100: 11541-6. PMID 12954979 DOI: 10.1073/Pnas.1831119100  0.32
2003 Byrne ME, Groover AT, Fontana JR, Martienssen RA. Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development (Cambridge, England). 130: 3941-50. PMID 12874117 DOI: 10.1242/Dev.00620  0.01
2003 Groover AT, Fontana JR, Arroyo JM, Yordan C, McCombie WR, Martienssen RA. Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiology. 132: 698-708. PMID 12805598 DOI: 10.1104/Pp.103.020099  0.08
2003 Muskett PR, Clissold L, Marocco A, Springer PS, Martienssen R, Dean C. A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome. Plant Physiology. 132: 506-16. PMID 12805583 DOI: 10.1104/Pp.102.016535  0.4
2003 Yu Y, Rambo T, Currie J, Saski C, Kim HR, Collura K, Thompson S, Simmons J, Yang TJ, Nah G, Patel AJ, Thurmond S, Henry D, Oates R, Palmer M, ... ... Martienssen RA, et al. In-depth view of structure, activity, and evolution of rice chromosome 10 Science. 300: 1566-1569. PMID 12791992 DOI: 10.1126/Science.1083523  0.36
2003 Volpe T, Schramke V, Hamilton GL, White SA, Teng G, Martienssen RA, Allshire RC. RNA interference is required for normal centromere function in fission yeast. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 11: 137-46. PMID 12733640 DOI: 10.1023/A:1022815931524  0.01
2003 Rabinowicz PD, McCombie WR, Martienssen RA. Gene enrichment in plant genomic shotgun libraries. Current Opinion in Plant Biology. 6: 150-6. PMID 12667872 DOI: 10.1016/S1369-5266(03)00008-6  0.12
2003 Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5  0.48
2003 Kidner CA, Martienssen RA. Macro effects of microRNAs in plants. Trends in Genetics : Tig. 19: 13-6. PMID 12493243 DOI: 10.1016/S0168-9525(02)00011-2  0.01
2002 Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science (New York, N.Y.). 297: 1833-7. PMID 12193640 DOI: 10.1126/Science.1074973  0.04
2002 Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science (New York, N.Y.). 297: 1871-3. PMID 12077425 DOI: 10.1126/Science.1074950  0.48
2002 Byrne ME, Simorowski J, Martienssen RA. ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development (Cambridge, England). 129: 1957-65. PMID 11934861  0.16
2001 Martienssen RA, Colot V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science (New York, N.Y.). 293: 1070-4. PMID 11498574 DOI: 10.1126/Science.293.5532.1070  0.24
2001 Singer T, Yordan C, Martienssen RA. Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development. 15: 591-602. PMID 11238379 DOI: 10.1101/Gad.193701  0.2
2000 Martienssen RA. Weeding out the genes: the Arabidopsis genome project. Functional & Integrative Genomics. 1: 2-11. PMID 11793217 DOI: 10.1007/S101420000006  0.01
2000 Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA. Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature. 408: 967-71. PMID 11140682 DOI: 10.1038/35050091  0.01
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423  0.32
2000 Springer PS, Holding DR, Groover A, Yordan C, Martienssen RA. The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development. Development (Cambridge, England). 127: 1815-22. PMID 10751170  0.36
2000 McCombie WR, De la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Yordan C, Sehkon M, Murray J, Sheet P, Cordes M, Threideh J, ... ... Martienssen R, et al. The complete sequence of a heterochromatic island from a higher eukaryote Cell. 100: 377-386. PMID 10676819 DOI: 10.1016/S0092-8674(00)80673-X  0.44
1999 Mayer K, Schüller C, Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, ... ... Martienssen R, et al. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature. 402: 769-77. PMID 10617198 DOI: 10.1038/47134  0.44
1999 Rabinowicz PD, Schutz K, Dedhia N, Yordan C, Parnell LD, Stein L, McCombie WR, Martienssen RA. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics. 23: 305-8. PMID 10545948 DOI: 10.1038/15479  0.04
1998 Settles AM, Martienssen R. Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology. 8: 494-501. PMID 9861672 DOI: 10.1016/S0962-8924(98)01387-7  0.44
1998 Martienssen RA. Functional genomics: probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America. 95: 2021-6. PMID 9482828 DOI: 10.1073/Pnas.95.5.2021  0.01
1997 Settles AM, Yonetani A, Baron A, Bush DR, Cline K, Martienssen R. Sec-independent protein translocation by the maize Hcf106 protein. Science (New York, N.Y.). 278: 1467-70. PMID 9367960 DOI: 10.1126/Science.278.5342.1467  0.44
1995 Springer PS, McCombie WR, Sundaresan V, Martienssen RA. Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science (New York, N.Y.). 268: 877-80. PMID 7754372 DOI: 10.1126/Science.7754372  0.64
1995 Sundaresan V, Springer P, Volpe T, Haward S, Jones JD, Dean C, Ma H, Martienssen R. Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development. 9: 1797-810. PMID 7622040 DOI: 10.1101/Gad.9.14.1797  0.4
1995 Martienssen RA, Richards EJ. DNA methylation in eukaryotes. Current Opinion in Genetics & Development. 5: 234-42. PMID 7613094 DOI: 10.1016/0959-437X(95)80014-X  0.01
1993 Vongs A, Kakutani T, Martienssen RA, Richards EJ. Arabidopsis thaliana DNA methylation mutants. Science (New York, N.Y.). 260: 1926-8. PMID 8316832 DOI: 10.1126/Science.8316832  0.01
1992 Han CD, Coe EH, Martienssen RA. Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. The Embo Journal. 11: 4037-46. PMID 1382980 DOI: 10.1002/J.1460-2075.1992.Tb05497.X  0.01
1991 Doseff A, Martienssen R, Sundaresan V. Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research. 19: 579-84. PMID 1849263 DOI: 10.1093/Nar/19.3.579  0.32
1990 Martienssen R, Barkan A, Taylor WC, Freeling M. Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize Genes and Development. 4: 331-343. PMID 2159936 DOI: 10.1101/Gad.4.3.331  0.32
1989 Martienssen RA, Baulcombe DC. An unusual wheat insertion sequence (WIS1) lies upstream of an alpha-amylase gene in hexaploid wheat, and carries a "minisatellite" array. Molecular & General Genetics : Mgg. 217: 401-10. PMID 2549380 DOI: 10.1007/Bf02464910  0.96
1989 Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator Embo Journal. 8: 1633-1639. PMID 2548850  0.2
1988 Huttly AK, Martienssen RA, Baulcombe DC. Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Molecular & General Genetics : Mgg. 214: 232-40. PMID 2467183 DOI: 10.1007/Bf00337716  0.68
1987 Baulcombe DC, Huttly AK, Martienssen RA, Barker RF, Jarvis MG. A novel wheat α-amylase gene (α-Amy3) Mgg Molecular &Amp; General Genetics. 209: 33-40. PMID 17186618 DOI: 10.1007/Bf00329833  0.4
1987 Baulcombe D, Huttly A, Martienssen R. Hormonal and development control of gene expression in wheat. Biochemical Society Transactions. 15: 9-11. PMID 3556746 DOI: 10.1042/Bst0150009  0.4
1987 Taylor WC, Barkan A, Martienssen RA. Use of nuclear mutants in the analysis of chloroplast development. Developmental Genetics. 8: 305-320. PMID 3502977 DOI: 10.1002/Dvg.1020080503  0.32
1985 Lazarus CM, Baulcombe DC, Martienssen RA. α-amylase genes of wheat are two multigene families which are differentially expressed. Plant Molecular Biology. 5: 13-24. PMID 24306536 DOI: 10.1007/Bf00017869  0.36
1985 Lazarus CM, Baulcombe DC, Martienssen RA. α-amylase genes of wheat are two multigene families which are differentially expressed Plant Molecular Biology. 5: 13-24. DOI: 10.1007/BF00017869  0.48
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