Doris Wagner - Publications

University of Pennsylvania, Philadelphia, PA, United States 

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jin R, Klasfeld S, Zhu Y, Fernandez Garcia M, Xiao J, Han SK, Konkol A, Wagner D. LEAFY is a pioneer transcription factor and licenses cell reprogramming to floral fate. Nature Communications. 12: 626. PMID 33504790 DOI: 10.1038/s41467-020-20883-w  1
2021 Zhu Y, Klasfeld S, Wagner D. Molecular regulation of plant developmental transitions and plant architecture via PEPB family proteins - an update on mechanism of action. Journal of Experimental Botany. PMID 33449083 DOI: 10.1093/jxb/eraa598  1
2020 Zhu Y, Klasfeld S, Jeong CW, Jin R, Goto K, Yamaguchi N, Wagner D. TERMINAL FLOWER 1-FD complex target genes and competition with FLOWERING LOCUS T. Nature Communications. 11: 5118. PMID 33046692 DOI: 10.1038/s41467-020-18782-1  1
2019 Zhu Y, Wagner D. Plant Inflorescence Architecture: The Formation, Activity, and Fate of Axillary Meristems. Cold Spring Harbor Perspectives in Biology. PMID 31308142 DOI: 10.1101/Cshperspect.A034652  1
2019 Sun B, Zhou Y, Cai J, Shang E, Yamaguchi N, Xiao J, Looi LS, Wee WY, Gao X, Wagner D, Ito T. Integration of transcriptional repression and Polycomb-mediated silencing of WUSCHEL in floral meristems. The Plant Cell. PMID 31068455 DOI: 10.1105/Tpc.18.00450  0.64
2019 Chung Y, Zhu Y, Wu MF, Simonini S, Kuhn A, Armenta-Medina A, Jin R, Østergaard L, Gillmor CS, Wagner D. Auxin Response Factors promote organogenesis by chromatin-mediated repression of the pluripotency gene SHOOTMERISTEMLESS. Nature Communications. 10: 886. PMID 30792395 DOI: 10.1038/S41467-019-08861-3  1
2017 Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, ... ... Wagner D, et al. Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nature Genetics. PMID 28825728 DOI: 10.1038/Ng.3937  0.92
2017 Bossi F, Fan J, Xiao J, Chandra L, Shen M, Dorone Y, Wagner D, Rhee SY. Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction. Bmc Genomics. 18: 480. PMID 28651538 DOI: 10.1186/S12864-017-3853-9  0.48
2017 Xiao J, Jin R, Wagner D. Developmental transitions: integrating environmental cues with hormonal signaling in the chromatin landscape in plants. Genome Biology. 18: 88. PMID 28490341 DOI: 10.1186/S13059-017-1228-9  0.48
2016 Xiao J, Lee US, Wagner D. Tug of war: adding and removing histone lysine methylation in Arabidopsis. Current Opinion in Plant Biology. 34: 41-53. PMID 27614255 DOI: 10.1016/J.Pbi.2016.08.002  0.48
2016 Wagner D, Weijers D. Editorial overview: Growth and development: Signals and communication in plant pluripotency, differentiation and growth Current Opinion in Plant Biology. DOI: 10.1016/j.pbi.2016.01.001  0.96
2015 Yamaguchi N, Jeong CW, Nole-Wilson S, Krizek BA, Wagner D. AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 induce LEAFY expression in response to auxin to promote the onset of flower formation in Arabidopsis. Plant Physiology. PMID 26537561 DOI: 10.1104/Pp.15.00969  0.96
2015 Peirats-Llobet M, Han SK, Gonzalez-Guzman M, Jeong CW, Rodriguez L, Belda-Palazon B, Wagner D, Rodriguez PL. A direct link between abscisic acid sensing and the chromatin remodeling ATPase BRAHMA via core ABA signaling pathway components. Molecular Plant. PMID 26499068 DOI: 10.1016/J.Molp.2015.10.003  0.96
2015 Wu MF, Yamaguchi N, Xiao J, Bargmann B, Estelle M, Sang Y, Wagner D. Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate. Elife. 4. PMID 26460543 DOI: 10.7554/Elife.09269  0.96
2015 Amtmann A, Ma H, Wagner D. Chromatin and Epigenetics. Plant Physiology. 168: 1185-8. PMID 26246617 DOI: 10.1104/Pp.15.01023  0.52
2015 Winter CM, Yamaguchi N, Wu MF, Wagner D. Transcriptional programs regulated by both LEAFY and APETALA1 at the time of flower formation. Physiologia Plantarum. PMID 26096587 DOI: 10.1111/Ppl.12357  0.96
2015 Han SK, Wu MF, Cui S, Wagner D. Roles and activities of chromatin remodeling ATPases in plants. The Plant Journal : For Cell and Molecular Biology. 83: 62-77. PMID 25977075 DOI: 10.1111/Tpj.12877  0.48
2015 Yamaguchi N, Winter CM, Wellmer F, Wagner D. Identification of direct targets of plant transcription factors using the GR fusion technique. Methods in Molecular Biology (Clifton, N.J.). 1284: 123-38. PMID 25757770 DOI: 10.1007/978-1-4939-2444-8_6  0.96
2015 Xiao J, Wagner D. Polycomb repression in the regulation of growth and development in Arabidopsis. Current Opinion in Plant Biology. 23: 15-24. PMID 25449722 DOI: 10.1016/J.Pbi.2014.10.003  0.96
2015 Wu M, Yamaguchi N, Xiao J, Bargmann B, Estelle M, Sang Y, Wagner D. Author response: Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate Elife. DOI: 10.7554/Elife.09269.027  0.64
2014 Yamaguchi N, Wu MF, Winter CM, Wagner D. LEAFY and Polar Auxin Transport Coordinately Regulate Arabidopsis Flower Development. Plants (Basel, Switzerland). 3: 251-65. PMID 27135503 DOI: 10.3390/plants3020251  0.64
2014 De Rybel B, Adibi M, Breda AS, Wendrich JR, Smit ME, Novák O, Yamaguchi N, Yoshida S, Van Isterdael G, Palovaara J, Nijsse B, Boekschoten MV, Hooiveld G, Beeckman T, Wagner D, et al. Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis. Science (New York, N.Y.). 345: 1255215. PMID 25104393 DOI: 10.1126/Science.1255215  0.96
2014 Xiao J, Xu S, Li C, Xu Y, Xing L, Niu Y, Huan Q, Tang Y, Zhao C, Wagner D, Gao C, Chong K. O-GlcNAc-mediated interaction between VER2 and TaGRP2 elicits TaVRN1 mRNA accumulation during vernalization in winter wheat. Nature Communications. 5: 4572. PMID 25091017 DOI: 10.1038/Ncomms5572  0.64
2014 Yamaguchi N, Winter CM, Wu MF, Kanno Y, Yamaguchi A, Seo M, Wagner D. Gibberellin acts positively then negatively to control onset of flower formation in Arabidopsis. Science (New York, N.Y.). 344: 638-41. PMID 24812402 DOI: 10.1126/Science.1250498  0.64
2014 Yamaguchi N, Winter CM, Wu MF, Kwon CS, William DA, Wagner D. PROTOCOLS: Chromatin Immunoprecipitation from Arabidopsis Tissues. The Arabidopsis Book / American Society of Plant Biologists. 12: e0170. PMID 24653666 DOI: 10.1199/Tab.0170  0.64
2014 Vercruyssen L, Verkest A, Gonzalez N, Heyndrickx KS, Eeckhout D, Han SK, Jégu T, Archacki R, Van Leene J, Andriankaja M, De Bodt S, Abeel T, Coppens F, Dhondt S, De Milde L, ... ... Wagner D, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. The Plant Cell. 26: 210-29. PMID 24443518 DOI: 10.1105/Tpc.113.115907  0.48
2014 Han SK, Wagner D. Role of chromatin in water stress responses in plants. Journal of Experimental Botany. 65: 2785-99. PMID 24302754 DOI: 10.1093/Jxb/Ert403  0.48
2013 Efroni I, Han SK, Kim HJ, Wu MF, Steiner E, Birnbaum KD, Hong JC, Eshed Y, Wagner D. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Developmental Cell. 24: 438-45. PMID 23449474 DOI: 10.1016/J.Devcel.2013.01.019  0.96
2013 Yamaguchi N, Wu MF, Winter CM, Berns MC, Nole-Wilson S, Yamaguchi A, Coupland G, Krizek BA, Wagner D. A molecular framework for auxin-mediated initiation of flower primordia. Developmental Cell. 24: 271-82. PMID 23375585 DOI: 10.1016/J.Devcel.2012.12.017  0.64
2012 Han SK, Sang Y, Rodrigues A, Wu MF, Rodriguez PL, Wagner D. The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis. The Plant Cell. 24: 4892-906. PMID 23209114 DOI: 10.1105/Tpc.112.105114  0.48
2012 Sang Y, Silva-Ortega CO, Wu S, Yamaguchi N, Wu MF, Pfluger J, Gillmor CS, Gallagher KL, Wagner D. Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects. The Plant Journal : For Cell and Molecular Biology. 72: 1000-14. PMID 23062007 DOI: 10.1111/Tpj.12009  0.96
2012 Wu MF, Wagner D. RNA in situ hybridization in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 883: 75-86. PMID 22589125 DOI: 10.1007/978-1-61779-839-9_5  0.44
2012 Wu MF, Sang Y, Bezhani S, Yamaguchi N, Han SK, Li Z, Su Y, Slewinski TL, Wagner D. SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 109: 3576-81. PMID 22323601 DOI: 10.1073/Pnas.1113409109  0.64
2012 Yamaguchi N, Yamaguchi A, Abe M, Wagner D, Komeda Y. LEAFY controls Arabidopsis pedicel length and orientation by affecting adaxial-abaxial cell fate. The Plant Journal : For Cell and Molecular Biology. 69: 844-56. PMID 22050454 DOI: 10.1111/J.1365-313X.2011.04836.X  0.64
2011 Wagner D, Meyerowitz EM. Switching on Flowers: Transient LEAFY Induction Reveals Novel Aspects of the Regulation of Reproductive Development in Arabidopsis. Frontiers in Plant Science. 2: 60. PMID 22639600 DOI: 10.3389/Fpls.2011.00060  0.96
2011 Pastore JJ, Limpuangthip A, Yamaguchi N, Wu MF, Sang Y, Han SK, Malaspina L, Chavdaroff N, Yamaguchi A, Wagner D. LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1. Development (Cambridge, England). 138: 3189-98. PMID 21750030 DOI: 10.1242/Dev.063073  0.96
2011 Winter CM, Austin RS, Blanvillain-Baufumé S, Reback MA, Monniaux M, Wu MF, Sang Y, Yamaguchi A, Yamaguchi N, Parker JE, Parcy F, Jensen ST, Li H, Wagner D. LEAFY target genes reveal floral regulatory logic, cis motifs, and a link to biotic stimulus response. Developmental Cell. 20: 430-43. PMID 21497757 DOI: 10.1016/J.Devcel.2011.03.019  0.96
2009 Sang Y, Wu MF, Wagner D. The stem cell--chromatin connection. Seminars in Cell & Developmental Biology. 20: 1143-8. PMID 19765665 DOI: 10.1016/J.Semcdb.2009.09.006  0.44
2009 Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D. The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1. Developmental Cell. 17: 268-78. PMID 19686687 DOI: 10.1016/J.Devcel.2009.06.007  0.44
2008 Walley JW, Rowe HC, Xiao Y, Chehab EW, Kliebenstein DJ, Wagner D, Dehesh K. The chromatin remodeler SPLAYED regulates specific stress signaling pathways. Plos Pathogens. 4: e1000237. PMID 19079584 DOI: 10.1371/Journal.Ppat.1000237  0.96
2007 Kwon CS, Wagner D. Unwinding chromatin for development and growth: a few genes at a time. Trends in Genetics : Tig. 23: 403-12. PMID 17566593 DOI: 10.1016/J.Tig.2007.05.010  0.44
2007 Bezhani S, Winter C, Hershman S, Wagner JD, Kennedy JF, Chang SK, Pfluger J, Su Y, Wagner D. Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases Brahma and Splayed Plant Cell. 19: 403-416. PMID 17293567 DOI: 10.1105/Tpc.106.048272  0.96
2006 Wang LS, Wagner D, Kwon CS, Su Y, Kim J. Transcriptional target prediction using qualitative reasoning. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 3138-41. PMID 17947008 DOI: 10.1109/IEMBS.2006.259290  0.96
2006 Kwon CS, Hibara K, Pfluger J, Bezhani S, Metha H, Aida M, Tasaka M, Wagner D. A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary. Development (Cambridge, England). 133: 3223-30. PMID 16854978 DOI: 10.1242/Dev.02508  0.44
2006 Su Y, Kwon CS, Bezhani S, Huvermann B, Chen C, Peragine A, Kennedy JF, Wagner D. The N-terminal ATPase AT-hook-containing region of the Arabidopsis chromatin-remodeling protein SPLAYED is sufficient for biological activity. The Plant Journal : For Cell and Molecular Biology. 46: 685-99. PMID 16640604 DOI: 10.1111/J.1365-313X.2006.02734.X  0.44
2006 Saddic LA, Huvermann B, Bezhani S, Su Y, Winter CM, Kwon CS, Collum RP, Wagner D. The LEAFY target LMI1 is a meristem identity regulator and acts together with LEAFY to regulate expression of CAULIFLOWER. Development (Cambridge, England). 133: 1673-82. PMID 16554366 DOI: 10.1242/Dev.02331  0.64
2005 Kwon CS, Chen C, Wagner D. WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis. Genes & Development. 19: 992-1003. PMID 15833920 DOI: 10.1101/Gad.1276305  0.44
2004 Wagner D, Wellmer F, Dilks K, William D, Smith MR, Kumar PP, Riechmann JL, Greenland AJ, Meyerowitz EM. Floral induction in tissue culture: a system for the analysis of LEAFY-dependent gene regulation. The Plant Journal : For Cell and Molecular Biology. 39: 273-82. PMID 15225291 DOI: 10.1111/J.1365-313X.2004.02127.X  0.96
2004 William DA, Su Y, Smith MR, Lu M, Baldwin DA, Wagner D. Genomic identification of direct target genes of LEAFY. Proceedings of the National Academy of Sciences of the United States of America. 101: 1775-80. PMID 14736918 DOI: 10.1073/Pnas.0307842100  0.96
2002 Wagner D, Meyerowitz EM. SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis. Current Biology : Cb. 12: 85-94. PMID 11818058 DOI: 10.1016/S0960-9822(01)00651-0  0.96
1999 Wagner D, Sablowski RW, Meyerowitz EM. Transcriptional activation of APETALA1 by LEAFY. Science (New York, N.Y.). 285: 582-4. PMID 10417387 DOI: 10.1126/Science.285.5427.582  0.96
1997 Wagner D, Hoecker U, Quail PH. RED1 is necessary for phytochrome B-mediated red light-specific signal transduction in Arabidopsis. The Plant Cell. 9: 731-43. PMID 9165750 DOI: 10.1105/Tpc.9.5.731  0.32
1996 Wagner D, Fairchild CD, Kuhn RM, Quail PH. Chromophore-bearing NH2-terminal domains of phytochromes A and B determine their photosensory specificity and differential light lability. Proceedings of the National Academy of Sciences of the United States of America. 93: 4011-5. PMID 8633007 DOI: 10.1073/Pnas.93.9.4011  0.56
1995 Quail PH, Boylan MT, Parks BM, Short TW, Xu Y, Wagner D. Phytochromes: photosensory perception and signal transduction. Science (New York, N.Y.). 268: 675-80. PMID 7732376 DOI: 10.1126/Science.7732376  1
1995 Bagnall DJ, King RW, Whitelam GC, Boylan MT, Wagner D, Quail PH. Flowering responses to altered expression of phytochrome in mutants and transgenic lines of Arabidopsis thaliana (L.) Heynh. Plant Physiology. 108: 1495-503. PMID 7659750 DOI: 10.1104/Pp.108.4.1495  1
1995 Wagner D, Quail PH. Mutational analysis of phytochrome B identifies a small COOH-terminal-domain region critical for regulatory activity. Proceedings of the National Academy of Sciences of the United States of America. 92: 8596-600. PMID 7567981 DOI: 10.1073/Pnas.92.19.8596  0.36
1992 Deng XW, Matsui M, Wei N, Wagner D, Chu AM, Feldmann KA, Quail PH. COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain. Cell. 71: 791-801. PMID 1423630 DOI: 10.1016/0092-8674(92)90555-Q  0.96
1991 Wagner D, Tepperman JM, Quail PH. Overexpression of Phytochrome B Induces a Short Hypocotyl Phenotype in Transgenic Arabidopsis. The Plant Cell. 3: 1275-1288. PMID 12324591 DOI: 10.1105/Tpc.3.12.1275  1
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