Zachary Lippman - Related publications

Affiliations: 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kumar VC, Pai R. Genes of the month: H3.3 histone genes: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34667098 DOI: 10.1136/jclinpath-2021-207857   
2021 Zhang X, Wang T. Plant 3-D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years. Plant & Cell Physiology. PMID 34486654 DOI: 10.1093/pcp/pcab134   
2021 Bhagwat M, Nagar S, Kaur P, Mehta R, Vancurova I, Vancura A. Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters. The Journal of Biological Chemistry. 101246. PMID 34582893 DOI: 10.1016/j.jbc.2021.101246   
2021 Morgunova E, Taipale J. Structural insights into the interaction between transcription factors and the nucleosome. Current Opinion in Structural Biology. 71: 171-179. PMID 34364091 DOI: 10.1016/j.sbi.2021.06.016   
2021 Huang R, Huang T, Irish VF. Do Epigenetic Timers Control Petal Development? Frontiers in Plant Science. 12: 709360. PMID 34295349 DOI: 10.3389/fpls.2021.709360   
2021 Li S, He X, Gao Y, Zhou C, Chiang VL, Li W. Histone Acetylation Changes in Plant Response to Drought Stress. Genes. 12. PMID 34573391 DOI: 10.3390/genes12091409   
2021 Du W, Pan D, Xiang P, Xiong C, Zhang M, Zhang Q, Tian Y, Zhang Z, Chen B, Luo K, Gong Q, Tian X. Terpyridine Zn(II) Complexes with Azide Units for Visualization of Histone Deacetylation in Living Cells under STED Nanoscopy. Acs Sensors. PMID 34498846 DOI: 10.1021/acssensors.1c01287   
2021 Van Rechem C, Ji F, Chakraborty D, Black JC, Sadreyev RI, Whetstine JR. Collective regulation of chromatin modifications predicts replication timing during cell cycle. Cell Reports. 37: 109799. PMID 34610305 DOI: 10.1016/j.celrep.2021.109799   
2021 Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR. Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails. Nature Communications. 12: 5280. PMID 34489435 DOI: 10.1038/s41467-021-25568-6   
2021 Reddy D, Bhattacharya S, Shah S, Rashid M, Gupta S. DNA methylation mediated downregulation of histone H3 variant H3.3 affects cell proliferation contributing to the development of HCC. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 1868: 166284. PMID 34626773 DOI: 10.1016/j.bbadis.2021.166284   
2021 Jing Y, Tian G, Qin X, Liu Z, Li XD. Lysine succinylation on non-histone chromosomal protein HMG-17 (HMGN2) regulates nucleosomal DNA accessibility by disrupting the HMGN2-nucleosome association. Rsc Chemical Biology. 2: 1257-1262. PMID 34458839 DOI: 10.1039/d1cb00070e   
2021 Si S, Zhang M, Hu Y, Wu C, Yang Y, Luo S, Xiao X. is a histone acetyltransferase that affects bolting development in Chinese flowering cabbage. Journal of Genetics. 100. PMID 34470920   
2021 Suganuma T, Workman JL. Nucleotide Metabolism Behind Epigenetics. Frontiers in Endocrinology. 12: 731648. PMID 34526971 DOI: 10.3389/fendo.2021.731648   
2021 Rippe K. Liquid-Liquid Phase Separation in Chromatin. Cold Spring Harbor Perspectives in Biology. PMID 34127447 DOI: 10.1101/cshperspect.a040683   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Gautam P, Sharma A, Bhatnagar A. Global histone modification analysis reveals hypoacetylated H3 and H4 histones in B Cells from systemic lupus erythematosus patients. Immunology Letters. 240: 41-45. PMID 34614442 DOI: 10.1016/j.imlet.2021.09.007   
2021 Nirala NK, Li Q, Ghule PN, Chen HJ, Li R, Zhu LJ, Wang R, Rice NP, Mao J, Stein JL, Stein GS, van Wijnen AJ, Ip YT. Hinfp is a guardian of the somatic genome by repressing transposable elements. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34620709 DOI: 10.1073/pnas.2100839118   
2021 Deng Q, Lu H, Wu M, Ran M, Wang Z, Wei D, Tang Q. [Molecular mechanisms of RPD3 family members in regulating plant development and environmental responses]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2645-2657. PMID 34472285 DOI: 10.13345/j.cjb.200534   
2021 Quan H, Tian H, Liu S, Xue Y, Zhang Y, Xie W, Gao YQ. Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes. Cells. 10. PMID 34685501 DOI: 10.3390/cells10102521   
2021 Shi J, Xu J, Chen YE, Li JS, Cui Y, Shen L, Li JJ, Li W. The concurrence of DNA methylation and demethylation is associated with transcription regulation. Nature Communications. 12: 5285. PMID 34489442 DOI: 10.1038/s41467-021-25521-7   
2021 Arimura Y, Shih RM, Froom R, Funabiki H. Structural features of nucleosomes in interphase and metaphase chromosomes. Molecular Cell. PMID 34478647 DOI: 10.1016/j.molcel.2021.08.010   
2021 Fulton MD, Cao M, Ho MC, Zhao X, Zheng YG. The Macromolecular Complexes of Histones Affect Protein Arginine Methyltransferase Activities. The Journal of Biological Chemistry. 101123. PMID 34492270 DOI: 10.1016/j.jbc.2021.101123   
2021 Kumar D, Cinghu S, Oldfield AJ, Yang P, Jothi R. Decoding the function of bivalent chromatin in development and cancer. Genome Research. PMID 34667120 DOI: 10.1101/gr.275736.121   
2021 Leo L, Colonna Romano N. Emerging Single-Cell Technological Approaches to Investigate Chromatin Dynamics and Centromere Regulation in Human Health and Disease. International Journal of Molecular Sciences. 22. PMID 34445507 DOI: 10.3390/ijms22168809   
2021 Ide S, Sasaki A, Kawamoto Y, Bando T, Sugiyama H, Maeshima K. Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs. Epigenetics & Chromatin. 14: 46. PMID 34627342 DOI: 10.1186/s13072-021-00421-8   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Dai Y, Wei T, Shen Z, Bei Y, Lin H, Dai H. Classical HDACs in the regulation of neuroinflammation. Neurochemistry International. 105182. PMID 34509559 DOI: 10.1016/j.neuint.2021.105182   
2021 Yang Y, Luan Y, Yuan RX, Luan Y. Histone Methylation Related Therapeutic Challenge in Cardiovascular Diseases. Frontiers in Cardiovascular Medicine. 8: 710053. PMID 34568453 DOI: 10.3389/fcvm.2021.710053   
2021 Dochnal SA, Francois AK, Cliffe AR. De Novo Polycomb Recruitment: Lessons from Latent Herpesviruses. Viruses. 13. PMID 34452335 DOI: 10.3390/v13081470   
2021 Bates DA, Bates CE, Earl AS, Skousen C, Fetbrandt AN, Ritchie J, Bodily PM, Johnson SM. Proximal-end bias from in-vitro reconstituted nucleosomes and the result on downstream data analysis. Plos One. 16: e0258737. PMID 34673804 DOI: 10.1371/journal.pone.0258737   
2021 Kleinschmidt RA, Lyon LM, Smith SL, Rittenberry J, Lawless KM, Acosta AA, Donze D. Genetic screen for suppressors of increased silencing in rpd3 mutants in Saccharomyces cerevisiae identifies a potential role for H3K4 methylation. G3 (Bethesda, Md.). PMID 34534290 DOI: 10.1093/g3journal/jkab309   
2021 Yoneda M, Yasui K, Nakagawa T, Hattori N, Ito T. Nucleosome assembly protein 1 (NAP-1) is a regulator of histone H1 acetylation. Journal of Biochemistry. PMID 34551067 DOI: 10.1093/jb/mvab098   
2021 Zhang S, Zhan L, Li X, Yang Z, Luo Y, Zhao H. Preclinical and clinical progress for HDAC as a putative target for epigenetic remodeling and functionality of immune cells. International Journal of Biological Sciences. 17: 3381-3400. PMID 34512154 DOI: 10.7150/ijbs.62001   
2021 Tian H, Yang J, Guo AD, Ran Y, Yang YZ, Yang B, Huang R, Liu H, Chen XH. Genetically Encoded Benzoyllysines Serve as Versatile Probes for Interrogating Histone Benzoylation and Interactions in Living Cells. Acs Chemical Biology. PMID 34618427 DOI: 10.1021/acschembio.1c00614   
2021 Rayapuram N, Jarad M, Alhoraibi HM, Bigeard J, Abulfaraj AA, Völz R, Mariappan KG, Almeida-Trapp M, Schlöffel M, Lastrucci E, Bonhomme L, Gust AA, Mithöfer A, Arold ST, Pflieger D, et al. Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33419940 DOI: 10.1073/pnas.2004670118   
2021 Amemiya HM, Schroeder J, Freddolino PL. Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom. Transcription. 1-37. PMID 34499567 DOI: 10.1080/21541264.2021.1973865   
2021 Lövkvist C, Mikulski P, Reeck S, Hartley M, Dean C, Howard M. Hybrid protein assembly-histone modification mechanism for PRC2-based epigenetic switching and memory. Elife. 10. PMID 34473050 DOI: 10.7554/eLife.66454   
2021 Guttzeit S, Backs J. Post-translational modifications talk and crosstalk to class IIa histone deacetylases. Journal of Molecular and Cellular Cardiology. PMID 34416247 DOI: 10.1016/j.yjmcc.2021.08.007   
2021 Wang T, Perazza D, Boussouar F, Cattaneo M, Bougdour A, Chuffart F, Barral S, Vargas A, Liakopoulou A, Puthier D, Bargier L, Morozumi Y, Jamshidikia M, Garcia-Saez I, Petosa C, et al. ATAD2 controls chromatin-bound HIRA turnover. Life Science Alliance. 4. PMID 34580178 DOI: 10.26508/lsa.202101151   
2021 Zheng W, Tasselli L, Li TM, Chua KF. Mammalian SIRT6 Represses Invasive Cancer Cell Phenotypes through ATP Citrate Lyase (ACLY)-Dependent Histone Acetylation. Genes. 12. PMID 34573442 DOI: 10.3390/genes12091460   
2021 Beel AJ, Azubel M, Matteï PJ, Kornberg RD. Structure of mitotic chromosomes. Molecular Cell. PMID 34520722 DOI: 10.1016/j.molcel.2021.08.020   
2021 Zhao H, Guo M, Zhang F, Shao X, Liu G, Xing Y, Zhao X, Luo L, Cai L. Nucleosome Assembly and Disassembly Are Governed by Chemical Kinetic Principles. Frontiers in Cell and Developmental Biology. 9: 762571. PMID 34692710 DOI: 10.3389/fcell.2021.762571   
2021 Jethmalani Y, Tran K, Negesse MY, Sun W, Ramos M, Jaiswal D, Jezek M, Amos S, Garcia EJ, Park D, Green EM. Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres. Life Science Alliance. 4. PMID 34625508 DOI: 10.26508/lsa.202101126   
2021 Ozturk N, Dansranjavin T, Gies S, Calay D, Shiplu S, Creppe C, Hendrickx J, Schagdarsurengin U. H4K20me3 marks distal intergenic and repetitive regions in human mature spermatozoa. Development (Cambridge, England). 148. PMID 34345914 DOI: 10.1242/dev.196477   
2021 Boltsis I, Grosveld F, Giraud G, Kolovos P. Chromatin Conformation in Development and Disease. Frontiers in Cell and Developmental Biology. 9: 723859. PMID 34422840 DOI: 10.3389/fcell.2021.723859   
2021 Wu MS, Li XJ, Liu CY, Xu Q, Huang JQ, Gu S, Chen JX. Effects of histone modification in major depressive disorder. Current Neuropharmacology. PMID 34551699 DOI: 10.2174/1570159X19666210922150043   
2021 Gupta R, Ambasta RK, Kumar P. Histone deacetylase in neuropathology. Advances in Clinical Chemistry. 104: 151-231. PMID 34462055 DOI: 10.1016/bs.acc.2020.09.004   
2021 Dziegielewski W, Ziolkowski PA. License to Regulate: Noncoding RNA Special Agents in Plant Meiosis and Reproduction. Frontiers in Plant Science. 12: 662185. PMID 34489987 DOI: 10.3389/fpls.2021.662185   
2021 Ding H, Zhang L, Yang Q, Zhang X, Li X. Epigenetics in kidney diseases. Advances in Clinical Chemistry. 104: 233-297. PMID 34462056 DOI: 10.1016/bs.acc.2020.09.005   
2021 Sudhamalla B, Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S. Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain. Chemistry, An Asian Journal. PMID 34448544 DOI: 10.1002/asia.202100793