R. Keith Slotkin - Publications

Ohio State University, Columbus, Columbus, OH 
 2005 University of California, Berkeley, Berkeley, CA 
Genetics, Molecular Biology, Plant Physiology

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lai Y, Lu XM, Daron J, Pan S, Wang J, Wang W, Tsuchiya T, Holub E, McDowell JM, Slotkin RK, Le Roch KG, Eulgem T. The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression. Plos Genetics. 16: e1008993. PMID 32925902 DOI: 10.1371/Journal.Pgen.1008993  1
2020 Panda K, Slotkin RK. Long-read cDNA Sequencing Enables a 'Gene-Like' Transcript Annotation of Transposable Elements. The Plant Cell. PMID 32647069 DOI: 10.1105/Tpc.20.00115  1
2020 Warman C, Panda K, Vejlupkova Z, Hokin S, Unger-Wallace E, Cole RA, Chettoor AM, Jiang D, Vollbrecht E, Evans MMS, Slotkin RK, Fowler JE. High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. Plos Genetics. 16: e1008462. PMID 32236090 DOI: 10.1371/Journal.Pgen.1008462  1
2020 Yates-Stewart AD, Daron J, Wijeratne S, Shahid S, Edgington HA, Slotkin RK, Michel A. Soybean aphids adapted to host-plant resistance by down regulating putative effectors and up regulating transposable elements. Insect Biochemistry and Molecular Biology. 103363. PMID 32201218 DOI: 10.1016/J.Ibmb.2020.103363  1
2020 Panda K, McCue AD, Slotkin RK. RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190417. PMID 32075560 DOI: 10.1098/Rstb.2019.0417  1
2020 Shahid S, Slotkin RK. The current revolution in transposable element biology enabled by long reads. Current Opinion in Plant Biology. 54: 49-56. PMID 32007731 DOI: 10.1016/J.Pbi.2019.12.012  1
2019 Ji L, Mathioni S, Johnson S, Tucker D, Bewick AJ, Kim KD, Daron J, Slotkin RK, Jackson SA, Parrott WA, Meyers BC, Schmitz R. Genome-wide reinforcement of DNA methylation occurs during somatic embryogenesis in soybean. The Plant Cell. PMID 31439802 DOI: 10.1105/Tpc.19.00255  1
2019 Zhang Y, Ramming A, Heinke L, Altschmied L, Slotkin RK, Becker JD, Kappel C, Lenhard M. The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development. The Plant Journal : For Cell and Molecular Biology. PMID 31009115 DOI: 10.1111/tpj.14348  1
2019 Choudury SG, Shahid S, Cuerda-Gil D, Panda K, Cullen A, Ashraf QUA, Sigman MJ, McCue AD, Slotkin RK. The RNA export factor ALY1 enables genome-wide RNA-directed DNA methylation. The Plant Cell. PMID 30814259 DOI: 10.1105/Tpc.18.00624  1
2016 Gautheret D, Taube JH, Mani SA, Santulli G, Cuerda-Gil D, Slotkin RK, Zhang B, Wang Y, Salzman DW, Weidhaas JB. Erratum: The Non-Coding RNA Journal Club: Highlights on Recent Papers-4. Non-Coding RNA 2016, 2, 9. Non-Coding Rna. 2. PMID 29657269 DOI: 10.3390/Ncrna2040010  1
2016 Gautheret D, Taube JH, Mani SA, Santulli G, Cuerda-Gil D, Slotkin RK, Zhang B, Wang Y, Salzman DW, Weidhaas JB. The Non-Coding RNA Journal Club: Highlights on Recent Papers-4. Non-Coding Rna. 2. PMID 29657267 DOI: 10.3390/Ncrna2030009  1
2016 Panda K, Ji L, Neumann DA, Daron J, Schmitz RJ, Slotkin RK. Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation. Genome Biology. 17: 170. PMID 27506905 DOI: 10.1186/S13059-016-1032-Y  1
2016 Sigman MJ, Slotkin RK. The First Rule of Plant Transposable Element Silencing: Location, Location, Location. The Plant Cell. 28: 304-13. PMID 26869697 DOI: 10.1105/Tpc.15.00869  1
2014 Singh PK, Bourque G, Craig NL, Dubnau JT, Feschotte C, Flasch DA, Gunderson KL, Malik HS, Moran JV, Peters JE, Slotkin RK, Levin HL. Mobile genetic elements and genome evolution 2014 Mobile Dna. 5. DOI: 10.1186/1759-8753-5-26  1
2013 Panda K, Slotkin RK. Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway. Plant Signaling & Behavior. 8. PMID 23759554 DOI: 10.4161/psb.25206  1
2012 Borges F, Gardner R, Lopes T, Calarco JP, Boavida LC, Slotkin RK, Martienssen RA, Becker JD. FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant Methods. 8: 44. PMID 23075219 DOI: 10.1186/1746-4811-8-44  1
2011 Lisch D, Slotkin RK. Strategies for silencing and escape: the ancient struggle between transposable elements and their hosts. International Review of Cell and Molecular Biology. 292: 119-52. PMID 22078960 DOI: 10.1016/B978-0-12-386033-0.00003-7  1
2011 McCue AD, Cresti M, Feijó JA, Slotkin RK. Cytoplasmic connection of sperm cells to the pollen vegetative cell nucleus: potential roles of the male germ unit revisited. Journal of Experimental Botany. 62: 1621-31. PMID 21357775 DOI: 10.1093/Jxb/Err032  1
2011 Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD. MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany. 62: 1611-20. PMID 21357774 DOI: 10.1093/Jxb/Erq452  1
2011 Jiang N, Ferguson AA, Slotkin RK, Lisch D. Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition. Proceedings of the National Academy of Sciences of the United States of America. 108: 1537-42. PMID 21220310 DOI: 10.1073/Pnas.1010814108  1
2010 Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature. 464: 628-32. PMID 20208518 DOI: 10.1038/nature08828  1
2009 Slotkin RK, Vaughn M, Borges F, Tanurdzić M, Becker JD, Feijó JA, Martienssen RA. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell. 136: 461-72. PMID 19203581 DOI: 10.1016/j.cell.2008.12.038  1
2009 Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/Tpc.108.063206  1
2008 Martienssen RA, Kloc A, Slotkin RK, Tanurdzić M. Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor Symposia On Quantitative Biology. 73: 265-71. PMID 19329575 DOI: 10.1101/Sqb.2008.73.062  1
2008 Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA. Epigenomic consequences of immortalized plant cell suspension culture. Plos Biology. 6: 2880-95. PMID 19071958 DOI: 10.1371/Journal.Pbio.0060302  1
2008 Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R. Kismeth: analyzer of plant methylation states through bisulfite sequencing. Bmc Bioinformatics. 9: 371. PMID 18786255 DOI: 10.1186/1471-2105-9-371  1
2007 Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nature Reviews. Genetics. 8: 272-85. PMID 17363976 DOI: 10.1038/Nrg2072  0.32
2005 Slotkin RK, Freeling M, Lisch D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nature Genetics. 37: 641-4. PMID 15908951 DOI: 10.1038/Ng1576  1
2003 Slotkin RK, Freeling M, Lisch D. Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics. 165: 781-97. PMID 14573488  1
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