166 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604  1
2021 Cai X, Chang L, Zhang T, Chen H, Zhang L, Lin R, Liang J, Wu J, Freeling M, Wang X. Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa. Genome Biology. 22: 166. PMID 34059118 DOI: 10.1186/s13059-021-02383-2  1
2021 Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120  1
2021 Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042  0.24
2020 Grover JW, Burgess D, Kendall T, Baten A, Pokhrel S, King GJ, Meyers BC, Freeling M, Mosher RA. Abundant expression of maternal siRNAs is a conserved feature of seed development. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541052 DOI: 10.1073/Pnas.2001332117  1
2019 Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Freeling M, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/S41588-019-0380-4  1
2019 Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Freeling M, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/S41588-019-0356-4  1
2018 Reiser L, Harper L, Freeling M, Han B, Luan S. FAIR: A Call to Make the Published Data More Findable, Accessible, Interoperable and Reusable. Molecular Plant. PMID 30076986 DOI: 10.1016/J.Molp.2018.07.005  1
2018 Cheng F, Wu J, Cai X, Liang J, Freeling M, Wang X. Gene retention, fractionation and subgenome differences in polyploid plants. Nature Plants. 4: 258-268. PMID 29725103 DOI: 10.1038/S41477-018-0136-7  1
2018 Grover JW, Kendall T, Baten A, Burgess D, Freeling M, King GJ, Mosher RA. Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa. The Plant Journal : For Cell and Molecular Biology. PMID 29569777 DOI: 10.1111/Tpj.13910  1
2017 Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, ... ... Freeling M, et al. Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications. 8: 2184. PMID 29259172 DOI: 10.1038/S41467-017-02292-8  1
2017 Freeling M. Picking up the Ball at the K/Pg Boundary: The Distribution of Ancient Polyploidies in the Plant Phylogenetic Tree as a Spandrel of Asexuality with Occasional Sex. The Plant Cell. 29: 202-206. PMID 28213362 DOI: 10.1105/Tpc.16.00836  0.01
2017 Xu J, Wang Q, Freeling M, Zhang X, Xu Y, Mao Y, Tang X, Wu F, Lan H, Cao M, Rong T, Lisch D, Lu Y. Natural antisense transcripts are significantly involved in regulation of drought stress in maize. Nucleic Acids Research. PMID 28175341 DOI: 10.1093/Nar/Gkx085  1
2016 Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, ... ... Freeling MR, et al. Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. Nature Genetics. PMID 27526322 DOI: 10.1038/Ng.3634  1
2016 Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X. Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa. The New Phytologist. 211: 288-99. PMID 26871271 DOI: 10.1111/Nph.13884  1
2015 Freeling M, Scanlon MJ, Fowler JE. Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences. Current Opinion in Genetics & Development. 35: 110-8. PMID 26657818 DOI: 10.1016/J.Gde.2015.11.002  1
2015 VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527: 508-11. PMID 26560029 DOI: 10.1038/Nature15714  1
2015 Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Freeling M, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435  1
2015 Burgess DG, Xu J, Freeling M. Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics. Current Opinion in Plant Biology. 27: 141-7. PMID 26247124 DOI: 10.1016/J.Pbi.2015.07.001  1
2015 Freeling M, Xu J, Woodhouse M, Lisch D. A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis. Molecular Plant. 8: 899-910. PMID 25743198 DOI: 10.1016/J.Molp.2015.02.009  1
2015 Freeling M, Parker S. Exploring experienced nurses' attitudes, views and expectations of new graduate nurses: a critical review. Nurse Education Today. 35: e42-9. PMID 25499528 DOI: 10.1016/j.nedt.2014.11.011  0.01
2014 de Almeida AM, Yockteng R, Schnable J, Alvarez-Buylla ER, Freeling M, Specht CD. Co-option of the polarity gene network shapes filament morphology in angiosperms. Scientific Reports. 4: 6194. PMID 25168962 DOI: 10.1038/Srep06194  1
2014 Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Proceedings of the National Academy of Sciences of the United States of America. 111: 5283-8. PMID 24706847 DOI: 10.1073/Pnas.1402475111  1
2014 Burgess D, Freeling M. The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates. The Plant Cell. 26: 946-61. PMID 24681619 DOI: 10.1105/Tpc.113.121905  1
2014 Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M. Two evolutionarily distinct classes of paleopolyploidy. Molecular Biology and Evolution. 31: 448-54. PMID 24296661 DOI: 10.1093/Molbev/Mst230  1
2014 Bolduc N, Tyers RG, Freeling M, Hake S. Unequal redundancy in maize knotted1 homeobox genes. Plant Physiology. 164: 229-38. PMID 24218490 DOI: 10.1104/Pp.113.228791  1
2014 Freeling M. A Short Course on the Impact of Gene Duplications on the Evolution of Novelty Advances in Botanical Research. 69: 335-361. DOI: 10.1016/B978-0-12-417163-3.00013-5  0.01
2013 Turco G, Schnable JC, Pedersen B, Freeling M. Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses. Frontiers in Plant Science. 4: 170. PMID 23874343 DOI: 10.3389/Fpls.2013.00170  1
2013 Wang X, Freeling M. The Brassica genome. Frontiers in Plant Science. 4: 148. PMID 23755053 DOI: 10.3389/Fpls.2013.00148  1
2013 Subramaniam S, Wang X, Freeling M, Pires JC. The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa. Genome Biology and Evolution. 5: 646-60. PMID 23493633 DOI: 10.1093/Gbe/Evt035  1
2012 Spangler JB, Ficklin SP, Luo F, Freeling M, Feltus FA. Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules. Plos One. 7: e45041. PMID 23024789 DOI: 10.1371/Journal.Pone.0045041  1
2012 D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, ... ... Freeling M, et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature. 488: 213-7. PMID 22801500 DOI: 10.1038/Nature11241  1
2012 Schnable JC, Wang X, Pires JC, Freeling M. Escape from preferential retention following repeated whole genome duplications in plants. Frontiers in Plant Science. 3: 94. PMID 22639677 DOI: 10.3389/Fpls.2012.00094  1
2012 Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu CR, Korkin D. Long identical multispecies elements in plant and animal genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: E1183-91. PMID 22496592 DOI: 10.1073/Pnas.1121356109  1
2012 Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC. Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Current Opinion in Plant Biology. 15: 131-9. PMID 22341793 DOI: 10.1016/J.Pbi.2012.01.015  1
2012 Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics. 190: 1563-74. PMID 22308264 DOI: 10.1534/Genetics.111.137349  1
2012 Schnable JC, Freeling M, Lyons E. Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biology and Evolution. 4: 265-77. PMID 22275519 DOI: 10.1093/Gbe/Evs009  1
2012 Zhang W, Wu Y, Schnable JC, Zeng Z, Freeling M, Crawford GE, Jiang J. High-resolution mapping of open chromatin in the rice genome. Genome Research. 22: 151-62. PMID 22110044 DOI: 10.1101/Gr.131342.111  1
2012 Spangler JB, Subramaniam S, Freeling M, Feltus FA. Evidence of function for conserved noncoding sequences in Arabidopsis thaliana. The New Phytologist. 193: 241-52. PMID 21955124 DOI: 10.1111/J.1469-8137.2011.03916.X  1
2011 Schnable JC, Pedersen BS, Subramaniam S, Freeling M. Dose-sensitivity, conserved non-coding sequences, and duplicate gene retention through multiple tetraploidies in the grasses. Frontiers in Plant Science. 2: 2. PMID 22645525 DOI: 10.3389/Fpls.2011.00002  1
2011 Woodhouse MR, Tang H, Freeling M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. The Plant Cell. 23: 4241-53. PMID 22180627 DOI: 10.1105/Tpc.111.093567  1
2011 Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/Journal.Pgen.1002372  1
2011 Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, ... Freeling M, et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 43: 1035-9. PMID 21873998 DOI: 10.1038/Ng.919  1
2011 Cande WZ, Freeling M. Inna Golubovskaya: the life of a geneticist studying meiosis. Genetics. 188: 491-8. PMID 21742729 DOI: 10.1534/Genetics.111.130039  1
2011 Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M. Screening synteny blocks in pairwise genome comparisons through integer programming. Bmc Bioinformatics. 12: 102. PMID 21501495 DOI: 10.1186/1471-2105-12-102  1
2011 Schnable JC, Freeling M. Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. Plos One. 6: e17855. PMID 21423772 DOI: 10.1371/Journal.Pone.0017855  1
2011 Schnable JC, Springer NM, Freeling M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proceedings of the National Academy of Sciences of the United States of America. 108: 4069-74. PMID 21368132 DOI: 10.1073/Pnas.1101368108  1
2011 Lyons E, Freeling M, Kustu S, Inwood W. Using genomic sequencing for classical genetics in E. coli K12. Plos One. 6: e16717. PMID 21364914 DOI: 10.1371/Journal.Pone.0016717  1
2011 Pedersen BS, Tang H, Freeling M. Gobe: an interactive, web-based tool for comparative genomic visualization. Bioinformatics (Oxford, England). 27: 1015-6. PMID 21296748 DOI: 10.1093/Bioinformatics/Btr056  1
2010 Li H, Freeling M, Lisch D. Epigenetic reprogramming during vegetative phase change in maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 22184-9. PMID 21135217 DOI: 10.1073/Pnas.1016884108  1
2010 Woodward JB, Abeydeera ND, Paul D, Phillips K, Rapala-Kozik M, Freeling M, Begley TP, Ealick SE, McSteen P, Scanlon MJ. A maize thiamine auxotroph is defective in shoot meristem maintenance. The Plant Cell. 22: 3305-17. PMID 20971897 DOI: 10.1105/Tpc.110.077776  1
2010 Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. Plos Biology. 8: e1000409. PMID 20613864 DOI: 10.1371/Journal.Pbio.1000409  1
2010 Kane J, Freeling M, Lyons E. The evolution of a high copy gene array in Arabidopsis. Journal of Molecular Evolution. 70: 531-44. PMID 20495794 DOI: 10.1007/S00239-010-9350-2  1
2010 Woodhouse MR, Pedersen B, Freeling M. Transposed genes in Arabidopsis are often associated with flanking repeats. Plos Genetics. 6: e1000949. PMID 20485521 DOI: 10.1371/Journal.Pgen.1000949  1
2010 Paterson AH, Freeling M, Tang H, Wang X. Insights from the comparison of plant genome sequences. Annual Review of Plant Biology. 61: 349-72. PMID 20441528 DOI: 10.1146/Annurev-Arplant-042809-112235  1
2009 Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annual Review of Plant Biology. 60: 433-53. PMID 19575588 DOI: 10.1146/Annurev.Arplant.043008.092122  0.01
2009 Freeling M, Subramaniam S. Conserved noncoding sequences (CNSs) in higher plants. Current Opinion in Plant Biology. 12: 126-32. PMID 19249238 DOI: 10.1016/J.Pbi.2009.01.005  1
2009 Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, ... ... Freeling M, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 457: 551-6. PMID 19189423 DOI: 10.1038/Nature07723  1
2008 Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. Plant Physiology. 148: 1772-81. PMID 18952863 DOI: 10.1104/Pp.108.124867  1
2008 Singh J, Freeling M, Lisch D. A position effect on the heritability of epigenetic silencing. Plos Genetics. 4: e1000216. PMID 18846225 DOI: 10.1371/Journal.Pgen.1000216  1
2008 Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Research. 18: 1924-37. PMID 18836034 DOI: 10.1101/Gr.081026.108  1
2008 Freeling M. The evolutionary position of subfunctionalization, downgraded. Genome Dynamics. 4: 25-40. PMID 18756075 DOI: 10.1159/000126004  0.01
2008 Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Freeling M, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856  1
2008 Lyons E, Freeling M. How to usefully compare homologous plant genes and chromosomes as DNA sequences. The Plant Journal : For Cell and Molecular Biology. 53: 661-73. PMID 18269575 DOI: 10.1111/J.1365-313X.2007.03326.X  1
2007 Freeling M, Rapaka L, Lyons E, Pedersen B, Thomas BC. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis. The Plant Cell. 19: 1441-57. PMID 17496117 DOI: 10.1105/Tpc.107.050419  1
2007 Thomas BC, Rapaka L, Lyons E, Pedersen B, Freeling M. Arabidopsis intragenomic conserved noncoding sequence. Proceedings of the National Academy of Sciences of the United States of America. 104: 3348-53. PMID 17301222 DOI: 10.1073/Pnas.0611574104  1
2006 Woodhouse MR, Freeling M, Lisch D. Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. Plos Biology. 4: e339. PMID 16968137 DOI: 10.1371/Journal.Pbio.0040339  1
2006 Freeling M, Thomas BC. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Research. 16: 805-14. PMID 16818725 DOI: 10.1101/Gr.3681406  1
2006 Thomas BC, Pedersen B, Freeling M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Research. 16: 934-46. PMID 16760422 DOI: 10.1101/Gr.4708406  1
2006 Osmont KS, Sadeghian N, Freeling M. Mosaic analysis of extended auricle1 (eta1) suggests that a two-way signaling pathway is involved in positioning the blade/sheath boundary in Zea mays. Developmental Biology. 295: 1-12. PMID 16684518 DOI: 10.1016/J.Ydbio.2005.11.012  1
2006 Diao X, Freeling M, Lisch D. Horizontal transfer of a plant transposon. Plos Biology. 4: e5. PMID 16336045 DOI: 10.1371/Journal.Pbio.0040005  1
2006 Woodhouse MR, Freeling M, Lisch D. The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics. 172: 579-92. PMID 16219782 DOI: 10.1534/Genetics.105.051383  1
2006 Paterson AH, Freeling M, Sasaki T. 5 Grains of Knowledge: Genomics of Model Cereals Cold Spring Harbor Monograph Archive. 46: 97-116. DOI: 10.1101/087969807.46.97  1
2005 Paterson AH, Freeling M, Sasaki T. Grains of knowledge: genomics of model cereals. Genome Research. 15: 1643-50. PMID 16339361 DOI: 10.1101/Gr.3725905  1
2005 Slotkin RK, Freeling M, Lisch D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nature Genetics. 37: 641-4. PMID 15908951 DOI: 10.1038/Ng1576  1
2004 Bauer P, Lubkowitz M, Tyers R, Nemoto K, Meeley RB, Goff SA, Freeling M. Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses. Planta. 219: 359-68. PMID 15034715 DOI: 10.1007/S00425-004-1233-6  1
2004 Langham RJ, Walsh J, Dunn M, Ko C, Goff SA, Freeling M. Genomic duplication, fractionation and the origin of regulatory novelty. Genetics. 166: 935-45. PMID 15020478 DOI: 10.1534/Genetics.166.2.935  1
2003 Osmont KS, Jesaitis LA, Freeling M. The extended auricle1 (eta1) gene is essential for the genetic network controlling postinitiation maize leaf development. Genetics. 165: 1507-19. PMID 14668398  1
2003 Slotkin RK, Freeling M, Lisch D. Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics. 165: 781-97. PMID 14573488  0.6
2003 May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R. Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America. 100: 11541-6. PMID 12954979 DOI: 10.1073/Pnas.1831119100  1
2003 Inada DC, Bashir A, Lee C, Thomas BC, Ko C, Goff SA, Freeling M. Conserved noncoding sequences in the grasses. Genome Research. 13: 2030-41. PMID 12952874 DOI: 10.1101/Gr.1280703  1
2003 Theodoris G, Inada N, Freeling M. Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development. Proceedings of the National Academy of Sciences of the United States of America. 100: 6837-42. PMID 12750468 DOI: 10.1073/Pnas.1132113100  0.01
2003 Kaplinsky NJ, Freeling M. Combinatorial control of meristem identity in maize inflorescences. Development (Cambridge, England). 130: 1149-58. PMID 12571106 DOI: 10.1242/Dev.00336  1
2003 Dong Q, Roy L, Freeling M, Walbot V, Brendel V. ZmDB, an integrated database for maize genome research. Nucleic Acids Research. 31: 244-7. PMID 12519992 DOI: 10.1093/Nar/Gkg082  1
2002 Nelson JM, Lane B, Freeling M. Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis. Development (Cambridge, England). 129: 4581-9. PMID 12223414  1
2002 Kaplinsky NJ, Braun DM, Penterman J, Goff SA, Freeling M. Utility and distribution of conserved noncoding sequences in the grasses. Proceedings of the National Academy of Sciences of the United States of America. 99: 6147-51. PMID 11972021 DOI: 10.1073/Pnas.052139599  1
2002 Kaplinsky N, Braun D, Lisch D, Hay A, Hake S, Freeling M. Biodiversity (Communications arising): maize transgene results in Mexico are artefacts. Nature. 416: 601-2; discussion 60. PMID 11935145 DOI: 10.1038/Nature739  1
2001 Lisch DR, Freeling M, Langham RJ, Choy MY. Mutator transposase is widespread in the grasses. Plant Physiology. 125: 1293-303. PMID 11244110 DOI: 10.1104/Pp.125.3.1293  1
2001 Freeling M. Grasses as a single genetic system: reassessment 2001. Plant Physiology. 125: 1191-7. PMID 11244100 DOI: 10.1104/Pp.125.3.1191  0.01
2000 Hay JO, Moulia B, Lane B, Freeling M, Silk WK. Biomechanical analysis of the Rolled (RLD) leaf phenotype of maize. American Journal of Botany. 87: 625-33. PMID 10811786  1
2000 Girard L, Freeling M. Mutator-suppressible alleles of rough sheath1 and liguleless3 in maize reveal multiple mechanisms for suppression. Genetics. 154: 437-46. PMID 10629001  1
2000 Hay JO, Moulia B, Lane B, Freeling M, Silk WK. Biomechanical analysis of the rolled (Rld) leaf phenotype of maize American Journal of Botany. 87: 625-633. DOI: 10.2307/2656848  1
1999 Girard L, Freeling M. Regulatory changes as a consequence of transposon insertion. Developmental Genetics. 25: 291-6. PMID 10570460 DOI: 10.1002/(Sici)1520-6408(1999)25:4<291::Aid-Dvg2>3.0.Co;2-5  1
1999 Walsh J, Freeling M. The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. The Plant Journal : For Cell and Molecular Biology. 19: 489-95. PMID 10504571 DOI: 10.1046/J.1365-313X.1999.00541.X  1
1999 Tsiantis M, Schneeberger R, Golz JF, Freeling M, Langdale JA. The maize rough sheath2 gene and leaf development programs in monocot and dicot plants. Science (New York, N.Y.). 284: 154-6. PMID 10102817 DOI: 10.1126/Science.284.5411.154  1
1999 Muehlbauer GJ, Fowler JE, Girard L, Tyers R, Harper L, Freeling M. Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf. Plant Physiology. 119: 651-62. PMID 9952462 DOI: 10.1104/Pp.119.2.651  1
1999 Lisch D, Girard L, Donlin M, Freeling M. Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins. Genetics. 151: 331-41. PMID 9872971  1
1998 Schichnes D, Freeling M. Lax midrib1-O, a systemic, heterochronic mutant of maize. American Journal of Botany. 85: 481. PMID 21684930 DOI: 10.2307/2446431  1
1998 Schneeberger R, Tsiantis M, Freeling M, Langdale JA. The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development. Development (Cambridge, England). 125: 2857-65. PMID 9655808  1
1998 Walsh J, Waters CA, Freeling M. The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary. Genes & Development. 12: 208-18. PMID 9490265 DOI: 10.1101/Gad.12.2.208  1
1998 Phillips RL, Freeling M. Plant genomics and our food supply: An introduction Proceedings of the National Academy of Sciences of the United States of America. 95: 1969-1970. PMID 9482815 DOI: 10.1073/Pnas.95.5.1969  1
1997 Muehlbauer GJ, Fowler JE, Freeling M. Sectors expressing the homeobox gene liguleless3 implicate a time-dependent mechanism for cell fate acquisition along the proximal-distal axis of the maize leaf. Development (Cambridge, England). 124: 5097-106. PMID 9362467  1
1997 Schichnes D, Schneeberger R, Freeling M. Induction of leaves directly from leaves in the maize mutant Lax midrib1-O. Developmental Biology. 186: 36-45. PMID 9188751 DOI: 10.1006/Dbio.1997.8579  1
1997 Moreno MA, Harper LC, Krueger RW, Dellaporta SL, Freeling M. liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis Genes and Development. 11: 616-628. PMID 9119226 DOI: 10.1101/Gad.11.5.616  1
1997 Bennetzen JL, Freeling M. The unified grass genome: Synergy in synteny Genome Research. 7: 301-306. PMID 9110169 DOI: 10.1101/Gr.7.4.301  1
1997 Scanlon MJ, Freeling M. Clonal sectors reveal that a specific meristematic domain is not utilized in the maize mutant narrow sheath. Developmental Biology. 182: 52-66. PMID 9073445 DOI: 10.1006/Dbio.1996.8452  1
1997 Scanlon MJ, Myers AM, Schneeberger RG, Freeling M. The maize gene empty pericarp-2 is required for progression beyond early stages of embryogenesis Plant Journal. 12: 901-909. DOI: 10.1046/J.1365-313X.1997.12040901.X  1
1996 Harper L, Freeling M. Interactions of liguleless1 and liguleless2 function during ligule induction in maize Genetics. 144: 1871-1882. PMID 8978070  1
1996 Sylvester AW, Smith L, Freeling M. Acquisition of identity in the developing leaf Annual Review of Cell and Developmental Biology. 12: 257-304. PMID 8970728 DOI: 10.1146/Annurev.Cellbio.12.1.257  1
1996 Fowler JE, Muehlbauer GJ, Freeling M. Mosaic analysis of the liguleless3 mutant phenotype in maize by coordinate suppression of mutator-insertion alleles. Genetics. 143: 489-503. PMID 8722798  1
1996 Scanlon MJ, Schneeberger RG, Freeling M. The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain. Development (Cambridge, England). 122: 1683-91. PMID 8674408  1
1996 Fowler JE, Freeling M. Genetic analysis of mutations that alter cell fates in maize leaves: dominant Liguleless mutations. Developmental Genetics. 18: 198-222. PMID 8631155 DOI: 10.1002/(Sici)1520-6408(1996)18:3<198::Aid-Dvg2>3.0.Co;2-4  1
1996 Harper L, Freeling M. Studies on early leaf development Current Opinion in Biotechnology. 7: 139-144. DOI: 10.1016/S0958-1669(96)80003-6  1
1995 Donlin MJ, Lisch D, Freeling M. Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family. The Plant Cell. 7: 1989-2000. PMID 8718617 DOI: 10.1105/Tpc.7.12.1989  1
1995 Kloeckener-Gruissem B, Freeling M. Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles. Proceedings of the National Academy of Sciences of the United States of America. 92: 1836-40. PMID 7892187 DOI: 10.1073/Pnas.92.6.1836  1
1995 Lisch D, Chomet P, Freeling M. Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line. Genetics. 139: 1777-96. PMID 7789777  1
1995 Schneeberger RG, Becraft PW, Hake S, Freeling M. Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf. Genes & Development. 9: 2292-304. PMID 7557382 DOI: 10.1101/Gad.9.18.2292  1
1994 Becraft PW, Freeling M. Genetic analysis of Rough sheath1 developmental mutants of maize. Genetics. 136: 295-311. PMID 8138166 DOI: 10.1016/0168-9525(94)90089-2  1
1994 Winkler RG, Freeling M. Analysis of the autonomy of maize dwarf 1 action in genetic mosaics. The Journal of Heredity. 85: 377-80. PMID 7963453  0.01
1993 Dawe RK, Lachmansingh AR, Freeling M. Transposon-mediated mutations in the untranslated leader of maize Adh1 that increase and decrease pollen-specific gene expression. The Plant Cell. 5: 311-9. PMID 8385517 DOI: 10.1105/Tpc.5.3.311  1
1993 Bennetzen JL, Freeling M. Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends in Genetics : Tig. 9: 259-61. PMID 8379002 DOI: 10.1016/0168-9525(93)90001-X  0.4
1993 Sinha N, Hake S, Freeling M. Genetic and molecular analysis of leaf development. Current Topics in Developmental Biology. 28: 47-80. PMID 8348842 DOI: 10.1016/S0070-2153(08)60209-4  1
1993 Vogel JM, Roth B, Cigan M, Freeling M. Expression of the two maize TATA binding protein genes and function of the encoded TBP proteins by complementation in yeast. The Plant Cell. 5: 1627-38. PMID 8312743 DOI: 10.1105/Tpc.5.11.1627  1
1992 Kloeckener-Gruissem B, Vogel JM, Freeling M. The TATA box promoter region of maize Adh1 affects its organ-specific expression. The Embo Journal. 11: 157-66. PMID 1740103 DOI: 10.1002/J.1460-2075.1992.Tb05038.X  1
1992 Bailey-Serres J, Tom J, Freeling M. Expression and distribution of cytosolic 6-phosphogluconate dehydrogenase isozymes in maize. Biochemical Genetics. 30: 233-46. PMID 1616479 DOI: 10.1007/Bf02396214  1
1992 Freeling M, Bertrand-Garcia R, Sinha N. Maize mutants and variants altering developmental time and their heterochronic interactions. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 14: 227-36. PMID 1596272 DOI: 10.1002/Bies.950140405  1
1992 Becraft PW, Freeling M. Cell interactions in plants. Current Opinion in Genetics & Development. 2: 571-5. PMID 1525509 DOI: 10.1016/S0959-437X(05)80174-1  1
1992 Freeling M. A conceptual framework for maize leaf development. Developmental Biology. 153: 44-58. PMID 1516751 DOI: 10.1016/0012-1606(92)90090-4  0.01
1992 Dawe RK, Freeling M. The role of initial cells in maize anther morphogenesis. Development (Cambridge, England). 116: 1077-85. PMID 1295730  1
1991 Becraft PW, Freeling M. Sectors of liguleless-1 tissue interrupt an inductive signal during maize leaf development. The Plant Cell. 3: 801-7. PMID 1820819 DOI: 10.1105/Tpc.3.8.801  1
1991 Chomet P, Lisch D, Hardeman KJ, Chandler VL, Freeling M. Identification of a regulatory transposon that controls the Mutator transposable element system in maize. Genetics. 129: 261-70. PMID 1657702  1
1990 Bailey-Serres J, Freeling M. Hypoxic stress-induced changes in ribosomes of maize seedling roots. Plant Physiology. 94: 1237-43. PMID 16667823 DOI: 10.1104/Pp.94.3.1237  1
1990 Becraft PW, Bongard-Pierce DK, Sylvester AW, Poethig RS, Freeling M. The liguleless-1 gene acts tissue specifically in maize leaf development. Developmental Biology. 141: 220-32. PMID 2391003 DOI: 10.1016/0012-1606(90)90117-2  1
1990 Dawe RK, Freeling M. Clonal analysis of the cell lineages in the male flower of maize. Developmental Biology. 142: 233-45. PMID 2172058 DOI: 10.1016/0012-1606(90)90167-H  1
1990 Martienssen R, Barkan A, Taylor WC, Freeling M. Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize Genes and Development. 4: 331-343. PMID 2159936 DOI: 10.1101/Gad.4.3.331  1
1990 Sylvester AW, Cande WZ, Freeling M. Division and differentiation during normal and liguleless-1 maize leaf development. Development (Cambridge, England). 110: 985-1000. PMID 2088734  1
1989 Johns MA, Babcock MS, Fuerstenberg SM, Fuerstenberg SI, Freeling M, Simpson RB. An unusually compact retrotransposon in maize. Plant Molecular Biology. 12: 633-42. PMID 24271196 DOI: 10.1007/Bf00044154  1
1989 Hake S, Vollbrecht E, Freeling M. Cloning Knotted, the dominant morphological mutant in maize using Ds2 as a transposon tag. The Embo Journal. 8: 15-22. PMID 16453866  1
1989 Langdale JA, Lane B, Freeling M, Nelson T. Cell lineage analysis of maize bundle sheath and mesophyll cells. Developmental Biology. 133: 128-39. PMID 2707480 DOI: 10.1016/0012-1606(89)90304-7  1
1989 Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator Embo Journal. 8: 1633-1639. PMID 2548850  1
1987 Chen CH, Oishi KK, Kloeckener-Gruissem B, Freeling M. Organ-specific expression of maize Adh1 is altered after a Mu transposon insertion. Genetics. 116: 469-77. PMID 3038674  1
1987 Sundaresan V, Freeling M. An extrachromosomal form of the Mu transposons of maize. Proceedings of the National Academy of Sciences of the United States of America. 84: 4924-8. PMID 3037528 DOI: 10.1073/Pnas.84.14.4924  0.88
1986 Alleman M, Freeling M. The Mu transposable elements of maize: evidence for transposition and copy number regulation during development. Genetics. 112: 107-19. PMID 3002907  0.01
1986 Springer B, Werr W, Starlinger P, Bennett DC, Zokolica M, Freeling M. The Shrunken gene on chromosome 9 of Zea mays L is expressed in various plant tissues and encodes an anaerobic protein. Molecular & General Genetics : Mgg. 205: 461-8. PMID 2436026  1
1986 Vayda ME, Freeling M. Insertion of the Mu1 transposable element into the first intron of maize Adh1 interferes with transcript elongation but does not disrupt chromatin structure Plant Molecular Biology. 6: 441-454. DOI: 10.1007/Bf00027136  1
1985 Freeling M, Hake S. Developmental genetics of mutants that specify knotted leaves in maize. Genetics. 111: 617-34. PMID 17246303  1
1985 Freeling M, Bennett DC. Maize Adh1 Annual Review of Genetics. 19: 297-323. PMID 3002240  1
1985 Johns MA, Mottinger J, Freeling M. A low copy number, copia-like transposon in maize Embo Journal. 4: 1093-1102. PMID 2988938 DOI: 10.1002/J.1460-2075.1985.Tb03745.X  1
1985 Hake S, Kelley PM, Taylor WC, Freeling M. Coordinate induction of alcohol dehydrogenase 1, aldolase, and other anaerobic RNAs in maize. The Journal of Biological Chemistry. 260: 5050-4. PMID 2580829  1
1984 Roberts JK, Callis J, Jardetzky O, Walbot V, Freeling M. Cytoplasmic acidosis as a determinant of flooding intolerance in plants. Proceedings of the National Academy of Sciences of the United States of America. 81: 6029-33. PMID 6592598 DOI: 10.1073/Pnas.81.19.6029  1
1984 Kelley PM, Freeling M. Anaerobic expression of maize fructose-1,6-diphosphate aldolase. The Journal of Biological Chemistry. 259: 14180-3. PMID 6501292  1
1984 Bennetzen JL, Swanson J, Taylor WC, Freeling M. DNA insertion in the first intron of maize Adh1 affects message levels: Cloning of progenitor and mutant Adh1 alleles Proceedings of the National Academy of Sciences of the United States of America. 81: 4125-4128. PMID 6330742 DOI: 10.1073/Pnas.81.13.4125  1
1984 Mottinger JP, Johns MA, Freeling M. Mutations of the Adh1 gene in maize following infection with barley stripe mosaic virus Mgg Molecular &Amp; General Genetics. 195: 367-369. PMID 6092861 DOI: 10.1007/Bf00332775  1
1984 Freeling M. Plant Transposable Elements and Insertion Sequences Annual Review of Plant Biology. 35: 277-298. DOI: 10.1146/Annurev.Pp.35.060184.001425  0.01
1984 Hake S, Taylor WC, Freeling M. Molecular analyses of genetically stable mutants of the maize Adh1 gene Mgg Molecular &Amp; General Genetics. 194: 42-48. DOI: 10.1007/Bf00383494  1
1984 Döring HP, Freeling M, Hake S, Johns MA, Kunze R, Merckelbach A, Salamini F, Starlinger P. A Ds-mutation of the Adh1 gene in Zea mays L Mgg Molecular &Amp; General Genetics. 193: 199-204. DOI: 10.1007/Bf00330667  1
1981 Freeling M. Toward monitoring specific DNA lesions in the gene by using pollen systems. Environmental Health Perspectives. 37: 13-7. PMID 7007034 DOI: 10.1289/Ehp.813713  0.01
1980 Okimoto R, Sachs MM, Porter EK, Freeling M. Patterns of polypeptide synthesis in various maize organs under anaerobiosis. Planta. 150: 89-94. PMID 24306530 DOI: 10.1007/Bf00385619  1
1980 Sachs MM, Freeling M, Okimoto R. The anaerobic proteins of maize. Cell. 20: 761-7. PMID 7418006 DOI: 10.1016/0092-8674(80)90322-0  1
1980 Kelly J, Freeling M. Purification of maize alcohol dehydrogenase-1 allozymes and comparison of their tryptic peptides. Biochimica Et Biophysica Acta. 624: 102-10. PMID 6996738 DOI: 10.1016/0005-2795(80)90229-9  0.01
1978 Freeling M. Maize Adh1 as a monitor of environmental mutagens. Environmental Health Perspectives. 27: 91-7. PMID 367778 DOI: 10.1289/Ehp.782791  0.01
1977 Freeling M. Spontaneous forward mutation versus reversion frequencies for maize Adh1 in pollen. Nature. 267: 154-6. PMID 16073427 DOI: 10.1038/267154A0  0.01
1977 Peterson DD, Benton EV, Tran M, Yang T, Freeling M, Craise L, Tobias CA. Biological effects of high-LET particles on corn-seed embryos in the Apollo-Soyuz Test Project--Biostack III experiment. Life Sciences and Space Research. 15: 151-5. PMID 11958209  1
1974 Freeling M. Dimerization of multiple maize ADHs studied in vivo and in vitro. Biochemical Genetics. 12: 407-17. PMID 4461035 DOI: 10.1007/Bf00486645  0.01
1973 Freeling M. Simultaneous induction by anaerobiosis or 2,4-D of multiple enzymes specificed by two unlinked genes: differential Adh1-Adh2 expression in maize. Molecular & General Genetics : Mgg. 127: 215-27. PMID 4782689  0.01
1973 Freeling M, Schwartz D. Genetic relationships between the multiple alcohol dehydrogenases of maize. Biochemical Genetics. 8: 27-36. PMID 4348257 DOI: 10.1007/Bf00485554  0.96
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