Michael Scanlon - Publications

Cornell University, Ithaca, NY, United States 

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yu X, Leiboff S, Li X, Guo T, Ronning N, Zhang X, Muehlbauer GJ, Timmermans MCP, Schnable PS, Scanlon MJ, Yu J. Genomic Prediction of Maize Micro-Phenotypes Provides Insights for Optimizing Selection and Mining Diversity. Plant Biotechnology Journal. PMID 32452105 DOI: 10.1111/Pbi.13420  0.32
2020 Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, et al. Author Correction: Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 32029893 DOI: 10.1038/S41477-020-0600-Z  0.32
2019 Knauer S, Javelle M, Li L, Li X, Ma X, Wimalanathan K, Kumari S, Johnston R, Leiboff S, Meeley R, Schnable PS, Ware D, Lawrence-Dill C, Yu J, Muehlbauer GJ, ... Scanlon MJ, et al. A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits. Genome Research. PMID 31744902 DOI: 10.1101/Gr.250878.119  0.32
2019 Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, et al. Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 31740773 DOI: 10.1038/S41477-019-0547-0  0.32
2019 Wang J, Li X, Do Kim K, Scanlon MJ, Jackson SA, Springer NM, Yu J. Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean. Genome Biology. 20: 74. PMID 31018867 DOI: 10.1186/S13059-019-1683-6  0.32
2018 Liu S, Schnable JC, Ott A, Eddy Yeh CT, Springer NM, Yu J, Muehlbauer G, Timmermans MCP, Scanlon MJ, Schnable PS. Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels. Molecular Biology and Evolution. PMID 30184112 DOI: 10.1093/Molbev/Msy174  0.32
2018 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, et al. Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 19: 122. PMID 30134966 DOI: 10.1186/S13059-018-1508-Z  0.44
2018 Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ. Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. Plos Genetics. 14: e1007234. PMID 29444085 DOI: 10.1371/Journal.Pgen.1007234  0.32
2017 Lin HY, Liu Q, Li X, Yang J, Liu S, Huang Y, Scanlon MJ, Nettleton D, Schnable PS. Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS. Genome Biology. 18: 192. PMID 29041960 DOI: 10.1186/S13059-017-1328-6  0.32
2016 Strable J, Scanlon MJ. Meristems take their cues from organ primordia. Nature Genetics. 48: 704-5. PMID 27350600 DOI: 10.1038/ng.3601  1
2015 Freeling M, Scanlon MJ, Fowler JE. Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences. Current Opinion in Genetics & Development. 35: 110-8. PMID 26657818 DOI: 10.1016/J.Gde.2015.11.002  1
2015 Leiboff S, Li X, Hu HC, Todt N, Yang J, Li X, Yu X, Muehlbauer GJ, Timmermans MC, Yu J, Schnable PS, Scanlon MJ. Genetic control of morphometric diversity in the maize shoot apical meristem. Nature Communications. 6: 8974. PMID 26584889 DOI: 10.1038/Ncomms9974  1
2015 Chandran D, Scanlon MJ, Ohtsu K, Timmermans MC, Schnable PS, Wildermuth MC. Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 112: 25A.3.1-25A.3.23. PMID 26423587 DOI: 10.1002/0471142727.Mb25A03S112  1
2015 Scanlon MJ. Leaves of grass: focusing phenomics on maize leaf growth. Genome Biology. 16: 196. PMID 26381482 DOI: 10.1186/s13059-015-0773-3  1
2015 Frank MH, Scanlon MJ. Cell-specific transcriptomic analyses of three-dimensional shoot development in the moss Physcomitrella patens. The Plant Journal : For Cell and Molecular Biology. 83: 743-51. PMID 26123849 DOI: 10.1111/tpj.12928  1
2015 Frank MH, Edwards MB, Schultz ER, McKain MR, Fei Z, Sørensen I, Rose JK, Scanlon MJ. Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages. The New Phytologist. 207: 893-904. PMID 25900772 DOI: 10.1111/Nph.13407  1
2015 Li X, Scanlon MJ, Yu J. Evolutionary patterns of DNA base composition and correlation to polymorphisms in DNA repair systems. Nucleic Acids Research. 43: 3614-25. PMID 25765652 DOI: 10.1093/Nar/Gkv197  1
2015 Thompson AM, Yu J, Timmermans MC, Schnable P, Crants JC, Scanlon MJ, Muehlbauer GJ. Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 (Bethesda, Md.). 5: 819-27. PMID 25748433 DOI: 10.1534/G3.115.017541  1
2015 Frank MH, Scanlon MJ. Transcriptomic evidence for the evolution of shoot meristem function in sporophyte-dominant land plants through concerted selection of ancestral gametophytic and sporophytic genetic programs. Molecular Biology and Evolution. 32: 355-67. PMID 25371433 DOI: 10.1093/molbev/msu303  1
2015 Johnston R, Leiboff S, Scanlon MJ. Ontogeny of the sheathing leaf base in maize (Zea mays). The New Phytologist. 205: 306-15. PMID 25195692 DOI: 10.1111/nph.13010  1
2014 Johnston R, Wang M, Sun Q, Sylvester AW, Hake S, Scanlon MJ. Transcriptomic analyses indicate that maize ligule development recapitulates gene expression patterns that occur during lateral organ initiation. The Plant Cell. 26: 4718-32. PMID 25516601 DOI: 10.1105/Tpc.114.132688  1
2014 Thompson AM, Crants J, Schnable PS, Yu J, Timmermans MC, Springer NM, Scanlon MJ, Muehlbauer GJ. Genetic control of maize shoot apical meristem architecture. G3 (Bethesda, Md.). 4: 1327-37. PMID 24855316 DOI: 10.1534/G3.114.011940  0.32
2014 Villarino GH, Bombarely A, Giovannoni JJ, Scanlon MJ, Mattson NS. Transcriptomic analysis of Petunia hybrida in response to salt stress using high throughput RNA sequencing. Plos One. 9: e94651. PMID 24722556 DOI: 10.1371/Journal.Pone.0094651  1
2014 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 15: R40. PMID 24576388 DOI: 10.1186/Gb-2014-15-2-R40  1
2013 Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ. Mendelian and non-Mendelian regulation of gene expression in maize. Plos Genetics. 9: e1003202. PMID 23341782 DOI: 10.1371/Journal.Pgen.1003202  1
2012 Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ. Ontogeny of the maize shoot apical meristem. The Plant Cell. 24: 3219-34. PMID 22911570 DOI: 10.1105/Tpc.112.099614  1
2012 Li X, Zhu C, Yeh CT, Wu W, Takacs EM, Petsch KA, Tian F, Bai G, Buckler ES, Muehlbauer GJ, Timmermans MC, Scanlon MJ, Schnable PS, Yu J. Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Research. 22: 2436-44. PMID 22701078 DOI: 10.1101/Gr.140277.112  1
2012 Zhang X, Douglas RN, Strable J, Lee M, Buckner B, Janick-Buckner D, Schnable PS, Timmermans MC, Scanlon MJ. Punctate vascular expression1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiology. 159: 1453-62. PMID 22669891 DOI: 10.1104/pp.111.192419  1
2012 Takacs EM, Suzuki M, Scanlon MJ. Discolored1 (DSC1) is an ADP-Ribosylation Factor-GTPase Activating Protein Required to Maintain Differentiation of Maize Kernel Structures. Frontiers in Plant Science. 3: 115. PMID 22666226 DOI: 10.3389/fpls.2012.00115  1
2011 Li X, Zhu C, Lin Z, Wu Y, Zhang D, Bai G, Song W, Ma J, Muehlbauer GJ, Scanlon MJ, Zhang M, Yu J. Chromosome size in diploid eukaryotic species centers on the average length with a conserved boundary. Molecular Biology and Evolution. 28: 1901-11. PMID 21239390 DOI: 10.1093/Molbev/Msr011  1
2010 Woodward JB, Abeydeera ND, Paul D, Phillips K, Rapala-Kozik M, Freeling M, Begley TP, Ealick SE, McSteen P, Scanlon MJ. A maize thiamine auxotroph is defective in shoot meristem maintenance. The Plant Cell. 22: 3305-17. PMID 20971897 DOI: 10.1105/Tpc.110.077776  1
2010 Ji J, Shimizu R, Sinha N, Scanlon MJ. Analyses of WOX4 transgenics provide further evidence for the evolution of the WOX gene family during the regulation of diverse stem cell functions. Plant Signaling & Behavior. 5: 916-20. PMID 20495368 DOI: 10.4161/Psb.5.7.12104  1
2010 Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MCP, Scanlon MJ. Ragged seedling2 encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves Plant Cell. 22: 1441-1451. PMID 20453116 DOI: 10.1105/Tpc.109.071613  1
2010 Petsch KA, Ma C, Scanlon MJ, Jorgensen RA. Targeted forward mutagenesis by transitive RNAi. The Plant Journal : For Cell and Molecular Biology. 61: 873-82. PMID 20003132 DOI: 10.1111/j.1365-313X.2009.04104.x  1
2009 Strable J, Scanlon MJ. Maize (Zea mays): a model organism for basic and applied research in plant biology. Cold Spring Harbor Protocols. 2009: pdb.emo132. PMID 20147033 DOI: 10.1101/pdb.emo132  1
2009 Jia Y, Lisch DR, Ohtsu K, Scanlon MJ, Nettleton D, Schnable PS. Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. Plos Genetics. 5: e1000737. PMID 19936292 DOI: 10.1371/Journal.Pgen.1000737  1
2009 Scanlon MJ, Ohtsu K, Timmermans MC, Schnable PS. Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 25A.3. PMID 19575479 DOI: 10.1002/0471142727.mb25a03s87  1
2009 Brooks L, Strable J, Zhang X, Ohtsu K, Zhou R, Sarkar A, Hargreaves S, Elshire RJ, Eudy D, Pawlowska T, Ware D, Janick-Buckner D, Buckner B, Timmermans MCP, Schnable PS, ... ... Scanlon MJ, et al. Microdissection of shoot meristem functional domains Plos Genetics. 5. PMID 19424435 DOI: 10.1371/Journal.Pgen.1000476  1
2009 Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC. Regulation of small RNA accumulation in the maize shoot apex. Plos Genetics. 5: e1000320. PMID 19119413 DOI: 10.1371/Journal.Pgen.1000320  1
2009 Shimizu R, Ji J, Kelsey E, Ohtsu K, Schnable PS, Scanlon MJ. Tissue specificity and evolution of meristematic WOX3 function. Plant Physiology. 149: 841-50. PMID 19073779 DOI: 10.1104/pp.108.130765  1
2008 Buckner B, Swaggart KA, Wong CC, Smith HA, Aurand KM, Scanlon MJ, Schnable PS, Janick-Buckner D. Expression and nucleotide diversity of the maize RIK gene. The Journal of Heredity. 99: 407-16. PMID 18310068 DOI: 10.1093/jhered/esn013  1
2007 Markwith SH, Scanlon MJ. Multiscale analysis of Hymenocallis coronaria (Amaryllidaceae) genetic diversity, genetic structure, and gene movement under the influence of unidirectional stream flow. American Journal of Botany. 94: 151-60. PMID 21642217 DOI: 10.3732/ajb.94.2.151  1
2007 Ohtsu K, Smith MB, Emrich SJ, Borsuk LA, Zhou R, Chen T, Zhang X, Timmermans MC, Beck J, Buckner B, Janick-Buckner D, Nettleton D, Scanlon MJ, Schnable PS. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). The Plant Journal : For Cell and Molecular Biology. 52: 391-404. PMID 17764504 DOI: 10.1111/J.1365-313X.2007.03244.X  1
2007 Zhang X, Madi S, Borsuk L, Nettleton D, Elshire RJ, Buckner B, Janick-Buckner D, Beck J, Timmermans M, Schnable PS, Scanlon MJ. Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. Plos Genetics. 3: e101. PMID 17571927 DOI: 10.1371/Journal.Pgen.0030101  1
2007 Buckner B, Beck J, Browning K, Fritz A, Grantham L, Hoxha E, Kamvar Z, Lough A, Nikolova O, Schnable PS, Scanlon MJ, Janick-Buckner D. Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics. 176: 741-7. PMID 17409087 DOI: 10.1534/genetics.106.066472  1
2006 Schlicht M, Strnad M, Scanlon MJ, Mancuso S, Hochholdinger F, Palme K, Volkmann D, Menzel D, Baluska F. Auxin immunolocalization implicates vesicular neurotransmitter-like mode of polar auxin transport in root apices. Plant Signaling & Behavior. 1: 122-33. PMID 19521492 DOI: 10.4161/psb.1.3.2759  1
2006 Henderson DC, Zhang X, Brooks L, Scanlon MJ. RAGGED SEEDLING2 is required for expression of KANADI2 and REVOLUTA homologues in the maize shoot apex. Genesis (New York, N.Y. : 2000). 44: 372-82. PMID 16858691 DOI: 10.1002/dvg.20223  1
2006 Fu S, Rogowsky P, Nover L, Scanlon MJ. The maize heat shock factor-binding protein paralogs EMP2 and HSBP2 interact non-redundantly with specific heat shock factors. Planta. 224: 42-52. PMID 16331466 DOI: 10.1007/s00425-005-0191-y  1
2006 Markwith SH, Scanlon MJ. Characterization of six polymorphic microsatellite loci isolated from Hymenocallis coronaria (J. LeConte) Kunth (Amaryllidaceae) Molecular Ecology Notes. 6: 72-74. DOI: 10.1111/j.1471-8286.2005.01141.x  1
2005 Henderson DC, Muehlbauer GJ, Scanlon MJ. Radial leaves of the maize mutant ragged seedling2 retain dorsiventral anatomy. Developmental Biology. 282: 455-66. PMID 15950610 DOI: 10.1016/J.Ydbio.2005.03.027  1
2004 Fu S, Scanlon MJ. Clonal mosaic analysis of EMPTY PERICARP2 reveals nonredundant functions of the duplicated HEAT SHOCK FACTOR BINDING PROTEINs during maize shoot development. Genetics. 167: 1381-94. PMID 15280250 DOI: 10.1534/genetics.104.026575  1
2004 Nardmann J, Ji J, Werr W, Scanlon MJ. The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems. Development (Cambridge, England). 131: 2827-39. PMID 15169755 DOI: 10.1242/dev.01164  1
2004 da Costa e Silva O, Lorbiecke R, Garg P, Müller L, Wassmann M, Lauert P, Scanlon M, Hsia AP, Schnable PS, Krupinska K, Wienand U. The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS. The Plant Journal : For Cell and Molecular Biology. 38: 923-39. PMID 15165185 DOI: 10.1111/J.1365-313X.2004.02094.X  0.32
2003 Scanlon MJ. The polar auxin transport inhibitor N-1-naphthylphthalamic acid disrupts leaf initiation, KNOX protein regulation, and formation of leaf margins in maize. Plant Physiology. 133: 597-605. PMID 14500790 DOI: 10.1104/pp.103.026880  1
2002 Fu S, Meeley R, Scanlon MJ. Empty pericarp2 encodes a negative regulator of the heat shock response and is required for maize embryogenesis. The Plant Cell. 14: 3119-32. PMID 12468731 DOI: 10.1105/tpc.006726  1
2002 Scanlon MJ, Henderson DC, Bernstein B. SEMAPHORE1 functions during the regulation of ancestrally duplicated knox genes and polar auxin transport in maize. Development (Cambridge, England). 129: 2663-73. PMID 12015294  1
1998 Scanlon MJ, Myers AM. Phenotypic analysis and molecular cloning of discolored-1 (dsc1), a maize gene required for early kernel development. Plant Molecular Biology. 37: 483-93. PMID 9617815 DOI: 10.1023/A:1005998830723  1
1998 Wessler S, Dawe K, Scanlon M. Standing on the shoulders of giants Trends in Plant Science. 3: 246-248. DOI: 10.1016/S1360-1385(98)01270-9  1
1997 Scanlon MJ, Freeling M. Clonal sectors reveal that a specific meristematic domain is not utilized in the maize mutant narrow sheath. Developmental Biology. 182: 52-66. PMID 9073445 DOI: 10.1006/Dbio.1996.8452  1
1997 Scanlon MJ, Myers AM, Schneeberger RG, Freeling M. The maize gene empty pericarp-2 is required for progression beyond early stages of embryogenesis Plant Journal. 12: 901-909. DOI: 10.1046/J.1365-313X.1997.12040901.X  1
1996 Scanlon MJ, Schneeberger RG, Freeling M. The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain. Development (Cambridge, England). 122: 1683-91. PMID 8674408  1
1993 James MG, Scanlon MJ, Qin M, Robertson DS, Myers AM. DNA sequence and transcript analysis of transposon MuA2, a regulator of Mutator transposable element activity in maize. Plant Molecular Biology. 21: 1181-5. PMID 8387832 DOI: 10.1007/Bf00023614  1
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