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Andrew J. Millar - Publications

Affiliations: 
1996-2004 Biological Sciences University of Warwick, Coventry, England, United Kingdom 
 2005- School of Biological Sciences University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Area:
Circadian rhythms, mathematical modelling, research data management, plant genetics, algal proteomics, scientific communities
Website:
http://www.amillar.org
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144 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Krahmer J, Hindle M, Perby LK, Mogensen HK, Nielsen TH, Halliday KJ, VanOoijen G, LeBihan T, Millar AJ. The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana. Molecular & Cellular Proteomics : McP. 100172. PMID 34740825 DOI: 10.1016/j.mcpro.2021.100172  0.835
2019 Kinmonth-Schultz HA, MacEwen MJS, Seaton DD, Millar AJ, Imaizumi T, Kim SH. An explanatory model of temperature influence on flowering through whole-plant accumulation of in . In Silico Plants. 1. PMID 36203490 DOI: 10.1093/insilicoplants/diz006  0.777
2019 Urquiza-García U, Millar AJ. Expanding the bioluminescent reporter toolkit for plant science with NanoLUC. Plant Methods. 15: 68. PMID 31316580 DOI: 10.1186/S13007-019-0454-4  0.47
2019 Zardilis A, Hume A, Millar AJ. A multi-model framework for the Arabidopsis life cycle. Journal of Experimental Botany. 70: 2463-2477. PMID 31091320 DOI: 10.1093/Jxb/Ery394  0.798
2019 Millar AJ, Urquiza JU, Freeman PL, Hume A, Plotkin GD, Sorokina O, Zardilis A, Zielinski T. Practical steps to digital organism models, from laboratory model species to 'Crops in silico. Journal of Experimental Botany. PMID 30615184 DOI: 10.1093/Jxb/Ery435  0.792
2019 Millar AJ, Kay SA. Circadian Control of cab Gene Transcription and mRNA Accumulation in Arabidopsis. The Plant Cell. 3: 541-550. PMID 12324603 DOI: 10.1105/Tpc.3.5.541  0.778
2019 Kinmonth-Schultz HA, MacEwen MJS, Seaton DD, Millar AJ, Imaizumi T, Kim S. An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana In Silico Plants. 1. DOI: 10.1093/INSILICOPLANTS/DIZ006  0.779
2019 Honorato-Zimmer R, Millar AJ, Plotkin GD, Zardilis A. Chromar, a language of parameterised agents Theoretical Computer Science. 765: 97-119. DOI: 10.1016/J.Tcs.2017.07.034  0.767
2018 Krahmer J, Goralogia GS, Kubota A, Zardilis A, Johnson RS, Song YH, MacCoss MJ, LeBihan T, Halliday KJ, Imaizumi T, Millar AJ. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis. Febs Letters. PMID 30536871 DOI: 10.1002/1873-3468.13311  0.803
2018 Song YH, Kubota A, Kwon MS, Covington MF, Lee N, Taagen ER, Laboy Cintrón D, Hwang DY, Akiyama R, Hodge SK, Huang H, Nguyen NH, Nusinow DA, Millar AJ, Shimizu KK, et al. Molecular basis of flowering under natural long-day conditions in Arabidopsis. Nature Plants. PMID 30250277 DOI: 10.1038/S41477-018-0253-3  0.828
2018 Flis A, Mengin V, Ivakov AA, Mugford ST, Hubberten HM, Encke B, Krohn N, Höhne M, Feil R, Hoefgen R, Lunn JE, Millar AJ, Smith AM, Sulpice R, Stitt M. Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves. Plant, Cell & Environment. PMID 30184255 DOI: 10.1111/Pce.13440  0.472
2018 Edwards KD, Takata N, Johansson M, Jurca M, Novák O, Hényková E, Liverani S, Kozarewa I, Strnad M, Millar AJ, Ljung K, Eriksson ME. Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees. Plant, Cell & Environment. PMID 29520862 DOI: 10.1111/Pce.13185  0.817
2018 Seaton DD, Graf A, Baerenfaller K, Stitt M, Millar AJ, Gruissem W. Photoperiodic control of theproteome reveals a translational coincidence mechanism. Molecular Systems Biology. 14: e7962. PMID 29496885 DOI: 10.15252/Msb.20177962  0.443
2018 Honorato-Zimmer R, Millar AJ, Plotkin GD, Zardilis A. Chromar, a Rule-based Language of Parameterised Objects Electronic Notes in Theoretical Computer Science. 335: 49-66. DOI: 10.1016/j.entcs.2018.03.008  0.749
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Millar AJ, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.778
2017 Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, et al. Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Frontiers in Plant Science. 8: 786. PMID 28555150 DOI: 10.3389/Fpls.2017.00786  0.399
2016 Bordage S, Sullivan S, Laird J, Millar AJ, Nimmo HG. Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks. The New Phytologist. PMID 27240972 DOI: 10.1111/Nph.14024  0.524
2016 Flis A, Sulpice R, Seaton DD, Ivakov AA, Liput M, Abel C, Millar AJ, Stitt M. Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis. Plant, Cell & Environment. PMID 27075884 DOI: 10.1111/Pce.12754  0.548
2016 Millar AJ. The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution. Annual Review of Plant Biology. 67: 595-618. PMID 26653934 DOI: 10.1146/Annurev-Arplant-043014-115619  0.525
2015 Zhu XG, Lynch JP, LeBauer DS, Millar AJ, Stitt M, Long SP. Plants in silico: Why, Why Now and What? --- An integrative platform for plant systems biology research. Plant, Cell & Environment. PMID 26523481 DOI: 10.1111/Pce.12673  0.412
2015 Flis A, Fernández AP, Zielinski T, Mengin V, Sulpice R, Stratford K, Hume A, Pokhilko A, Southern MM, Seaton DD, McWatters HG, Stitt M, Halliday KJ, Millar AJ. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biology. 5. PMID 26468131 DOI: 10.1098/Rsob.150042  0.826
2015 Trejo Banos D, Millar AJ, Sanguinetti G. A Bayesian approach for structure learning in oscillating regulatory networks. Bioinformatics (Oxford, England). 31: 3617-24. PMID 26177966 DOI: 10.1093/Bioinformatics/Btv414  0.421
2015 Mock T, Daines SJ, Geider R, Collins S, Metodiev M, Millar AJ, Moulton V, Lenton TM. Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes. Global Change Biology. PMID 25988950 DOI: 10.1111/Gcb.12983  0.33
2015 Le Bihan T, Hindle M, Martin SF, Barrios-Llerena ME, Krahmer J, Kis K, Millar AJ, van Ooijen G. Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri. Proteomics. PMID 25930153 DOI: 10.1002/Pmic.201500086  0.81
2015 Krahmer J, Hindle MM, Martin SF, Le Bihan T, Millar AJ. Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana. Methods in Enzymology. 551: 405-31. PMID 25662467 DOI: 10.1016/Bs.Mie.2014.10.022  0.808
2015 Seaton DD, Smith RW, Song YH, MacGregor DR, Stewart K, Steel G, Foreman J, Penfield S, Imaizumi T, Millar AJ, Halliday KJ. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Molecular Systems Biology. 11: 776. PMID 25600997 DOI: 10.15252/Msb.20145766  0.844
2015 Noordally ZB, Millar AJ. Clocks in algae. Biochemistry. 54: 171-83. PMID 25379817 DOI: 10.1021/Bi501089X  0.811
2015 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, De Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Correction: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth (Proc Natl Acad Sci USA (2014) 111 (E4127-E4136)) Proceedings of the National Academy of Sciences of the United States of America. 112: E2556. DOI: 10.1073/Pnas.1506983112  0.759
2015 Chew YH, Seaton DD, Millar AJ. Multi-scale modelling to synergise Plant Systems Biology and Crop Science Field Crops Research. DOI: 10.1016/J.Fcr.2016.02.012  0.794
2014 Chew YH, Wenden B, Flis A, Mengin V, Taylor J, Davey CL, Tindal C, Thomas H, Ougham HJ, de Reffye P, Stitt M, Williams M, Muetzelfeldt R, Halliday KJ, Millar AJ. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America. 111: E4127-36. PMID 25197087 DOI: 10.1073/Pnas.1410238111  0.813
2014 Hindle MM, Martin SF, Noordally ZB, van Ooijen G, Barrios-Llerena ME, Simpson TI, Le Bihan T, Millar AJ. The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species. Bmc Genomics. 15: 640. PMID 25085202 DOI: 10.1186/1471-2164-15-640  0.778
2014 Dixon LE, Hodge SK, van Ooijen G, Troein C, Akman OE, Millar AJ. Light and circadian regulation of clock components aids flexible responses to environmental signals. The New Phytologist. 203: 568-77. PMID 24842166 DOI: 10.1111/Nph.12853  0.769
2014 Zielinski T, Moore AM, Troup E, Halliday KJ, Millar AJ. Strengths and limitations of period estimation methods for circadian data. Plos One. 9: e96462. PMID 24809473 DOI: 10.1371/Journal.Pone.0096462  0.643
2014 Moore A, Zielinski T, Millar AJ. Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure. Methods in Molecular Biology (Clifton, N.J.). 1158: 13-44. PMID 24792042 DOI: 10.1007/978-1-4939-0700-7_2  0.306
2014 Seaton DD, Ebenhöh O, Millar AJ, Pokhilko A. Regulatory principles and experimental approaches to the circadian control of starch turnover. Journal of the Royal Society, Interface / the Royal Society. 11: 20130979. PMID 24335560 DOI: 10.1098/Rsif.2013.0979  0.554
2013 MacGregor DR, Gould P, Foreman J, Griffiths J, Bird S, Page R, Stewart K, Steel G, Young J, Paszkiewicz K, Millar AJ, Halliday KJ, Hall AJ, Penfield S. HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis. The Plant Cell. 25: 4391-404. PMID 24254125 DOI: 10.1105/Tpc.113.114959  0.796
2013 van Ooijen G, Martin SF, Barrios-Llerena ME, Hindle M, Le Bihan T, O'Neill JS, Millar AJ. Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga. Bmc Cell Biology. 14: 46. PMID 24127907 DOI: 10.1186/1471-2121-14-46  0.824
2013 van Ooijen G, Hindle M, Martin SF, Barrios-Llerena M, Sanchez F, Bouget FY, O'Neill JS, Le Bihan T, Millar AJ. Functional analysis of Casein Kinase 1 in a minimal circadian system. Plos One. 8: e70021. PMID 23936135 DOI: 10.1371/Journal.Pone.0070021  0.841
2013 Keily J, MacGregor DR, Smith RW, Millar AJ, Halliday KJ, Penfield S. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock. The Plant Journal : For Cell and Molecular Biology. 76: 247-57. PMID 23909712 DOI: 10.1111/Tpj.12303  0.752
2013 Gould PD, Ugarte N, Domijan M, Costa M, Foreman J, Macgregor D, Rose K, Griffiths J, Millar AJ, Finkenstädt B, Penfield S, Rand DA, Halliday KJ, Hall AJ. Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology. 9: 650. PMID 23511208 DOI: 10.1038/Msb.2013.7  0.826
2013 Pokhilko A, Mas P, Millar AJ. Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs. Bmc Systems Biology. 7: 23. PMID 23506153 DOI: 10.1186/1752-0509-7-23  0.549
2013 Ocone A, Millar AJ, Sanguinetti G. Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics. Bioinformatics (Oxford, England). 29: 910-6. PMID 23407360 DOI: 10.1093/Bioinformatics/Btt069  0.31
2012 van Ooijen G, Millar AJ. Non-transcriptional oscillators in circadian timekeeping. Trends in Biochemical Sciences. 37: 484-92. PMID 22917814 DOI: 10.1016/J.Tibs.2012.07.006  0.516
2012 Adams RR, Tsorman N, Stratford K, Akman OE, Gilmore S, Juty N, Le Novère N, Millar AJ, Millar AJ. The Input Signal Step Function (ISSF), a standard method to encode input signals in SBML models with software support, applied to circadian clock models. Journal of Biological Rhythms. 27: 328-32. PMID 22855577 DOI: 10.1177/0748730412451077  0.461
2012 van Ooijen G, Knox K, Kis K, Bouget FY, Millar AJ. Genomic transformation of the picoeukaryote Ostreococcus tauri Journal of Visualized Experiments. PMID 22825291 DOI: 10.3791/4074  0.376
2012 Song YH, Smith RW, To BJ, Millar AJ, Imaizumi T. FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering. Science (New York, N.Y.). 336: 1045-9. PMID 22628657 DOI: 10.1126/Science.1219644  0.811
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Peroxiredoxins are conserved markers of circadian rhythms. Nature. 485: 459-64. PMID 22622569 DOI: 10.1038/Nature11088  0.751
2012 Akman OE, Watterson S, Parton A, Binns N, Millar AJ, Ghazal P. Digital clocks: simple Boolean models can quantitatively describe circadian systems. Journal of the Royal Society, Interface / the Royal Society. 9: 2365-82. PMID 22499125 DOI: 10.1098/Rsif.2012.0080  0.477
2012 Wenden B, Toner DL, Hodge SK, Grima R, Millar AJ. Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf. Proceedings of the National Academy of Sciences of the United States of America. 109: 6757-62. PMID 22496591 DOI: 10.1073/Pnas.1118814109  0.52
2012 Huang W, Pérez-García P, Pokhilko A, Millar AJ, Antoshechkin I, Riechmann JL, Mas P. Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science (New York, N.Y.). 336: 75-9. PMID 22403178 DOI: 10.1126/Science.1219075  0.49
2012 Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Molecular Systems Biology. 8: 574. PMID 22395476 DOI: 10.1038/Msb.2012.6  0.844
2012 Guerriero ML, Pokhilko A, Fernández AP, Halliday KJ, Millar AJ, Hillston J. Stochastic properties of the plant circadian clock. Journal of the Royal Society, Interface / the Royal Society. 9: 744-56. PMID 21880617 DOI: 10.1098/Rsif.2011.0378  0.756
2012 Akman OE, Watterson S, Parton A, Binns N, Millar AJ, Ghazal P. Corrigendum for the paper ‘Digital clocks: simple Boolean models can quantitatively describe circadian systems’ Journal of the Royal Society Interface. 9: 3578-3578. DOI: 10.1098/Rsif.2012.0673  0.401
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, et al. Erratum: Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms Nature. 489: 590-590. DOI: 10.1038/Nature11427  0.541
2011 Kolmos E, Herrero E, Bujdoso N, Millar AJ, Tóth R, Gyula P, Nagy F, Davis SJ. A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis. The Plant Cell. 23: 3230-46. PMID 21908721 DOI: 10.1105/Tpc.111.088195  0.808
2011 Le Bihan T, Martin SF, Chirnside ES, van Ooijen G, Barrios-Llerena ME, O'Neill JS, Shliaha PV, Kerr LE, Millar AJ. Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri. Journal of Proteomics. 74: 2060-70. PMID 21635980 DOI: 10.1016/J.Jprot.2011.05.028  0.641
2011 van Ooijen G, Dixon LE, Troein C, Millar AJ. Proteasome function is required for biological timing throughout the twenty-four hour cycle. Current Biology : Cb. 21: 869-75. PMID 21530263 DOI: 10.1016/J.Cub.2011.03.060  0.77
2011 O'Neill JS, van Ooijen G, Le Bihan T, Millar AJ. Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance. Journal of Biological Rhythms. 26: 91-8. PMID 21454289 DOI: 10.1177/0748730410397465  0.618
2011 Ashelford K, Eriksson ME, Allen CM, D'Amore R, Johansson M, Gould P, Kay S, Millar AJ, Hall N, Hall A. Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis. Genome Biology. 12: R28. PMID 21429190 DOI: 10.1186/Gb-2011-12-3-R28  0.716
2011 Sorokina O, Corellou F, Dauvillée D, Sorokin A, Goryanin I, Ball S, Bouget FY, Millar AJ. Microarray data can predict diurnal changes of starch content in the picoalga Ostreococcus. Bmc Systems Biology. 5: 36. PMID 21352558 DOI: 10.1186/1752-0509-5-36  0.427
2011 Johansson M, McWatters HG, Bakó L, Takata N, Gyula P, Hall A, Somers DE, Millar AJ, Eriksson ME. Partners in time: EARLY BIRD associates with ZEITLUPE and regulates the speed of the Arabidopsis clock. Plant Physiology. 155: 2108-22. PMID 21300918 DOI: 10.1104/Pp.110.167155  0.851
2011 O'Neill JS, van Ooijen G, Dixon LE, Troein C, Corellou F, Bouget FY, Reddy AB, Millar AJ. Circadian rhythms persist without transcription in a eukaryote. Nature. 469: 554-8. PMID 21270895 DOI: 10.1038/Nature09654  0.843
2011 Wenden B, Kozma-Bognár L, Edwards KD, Hall AJ, Locke JC, Millar AJ. Light inputs shape the Arabidopsis circadian system. The Plant Journal : For Cell and Molecular Biology. 66: 480-91. PMID 21255161 DOI: 10.1111/J.1365-313X.2011.04505.X  0.859
2011 Dixon LE, Knox K, Kozma-Bognar L, Southern MM, Pokhilko A, Millar AJ. Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis Current Biology. 21: 120-125. PMID 21236675 DOI: 10.1016/J.Cub.2010.12.013  0.849
2011 Troein C, Corellou F, Dixon LE, van Ooijen G, O'Neill JS, Bouget FY, Millar AJ. Multiple light inputs to a simple clock circuit allow complex biological rhythms. The Plant Journal : For Cell and Molecular Biology. 66: 375-85. PMID 21219507 DOI: 10.1111/J.1365-313X.2011.04489.X  0.848
2011 Pokhilko A, Ramos JA, Holtan H, Maszle DR, Khanna R, Millar AJ. Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis. Journal of Theoretical Biology. 270: 31-41. PMID 21093457 DOI: 10.1016/J.Jtbi.2010.11.021  0.486
2010 Saithong T, Painter KJ, Millar AJ. Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models. Plos One. 5: e15589. PMID 21179566 DOI: 10.1371/Journal.Pone.0015589  0.728
2010 Saithong T, Painter KJ, Millar AJ. The contributions of interlocking loops and extensive nonlinearity to the properties of circadian clock models. Plos One. 5: e13867. PMID 21152419 DOI: 10.1371/Journal.Pone.0013867  0.764
2010 Edwards KD, Akman OE, Knox K, Lumsden PJ, Thomson AW, Brown PE, Pokhilko A, Kozma-Bognar L, Nagy F, Rand DA, Millar AJ. Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology. 6: 424. PMID 21045818 DOI: 10.1038/Msb.2010.81  0.849
2010 Pokhilko A, Hodge SK, Stratford K, Knox K, Edwards KD, Thomson AW, Mizuno T, Millar AJ. Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Molecular Systems Biology. 6: 416. PMID 20865009 DOI: 10.1038/Msb.2010.69  0.83
2010 Akman OE, Rand DA, Brown PE, Millar AJ. Robustness from flexibility in the fungal circadian clock. Bmc Systems Biology. 4: 88. PMID 20576110 DOI: 10.1186/1752-0509-4-88  0.686
2009 Salazar JD, Saithong T, Brown PE, Foreman J, Locke JC, Halliday KJ, Carré IA, Rand DA, Millar AJ. Prediction of photoperiodic regulators from quantitative gene circuit models. Cell. 139: 1170-9. PMID 20005809 DOI: 10.1016/J.Cell.2009.11.029  0.837
2009 Troein C, Locke JC, Turner MS, Millar AJ. Weather and seasons together demand complex biological clocks. Current Biology : Cb. 19: 1961-4. PMID 19818616 DOI: 10.1016/J.Cub.2009.09.024  0.802
2009 Sorokina O, Kapus A, Terecskei K, Dixon LE, Kozma-Bognar L, Nagy F, Millar AJ. A switchable light-input, light-output system modelled and constructed in yeast. Journal of Biological Engineering. 3: 15. PMID 19761615 DOI: 10.1186/1754-1611-3-15  0.83
2009 Davis AM, Hall A, Millar AJ, Darrah C, Davis SJ. Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana. Plant Methods. 5: 3. PMID 19250520 DOI: 10.1186/1746-4811-5-3  0.67
2009 Davey C, Ougham H, Millar A, Thomas H, Tindal C, Muetzelfeldt R. PlaSMo: Making existing plant and crop mathematical models available to plant systems biologists Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 153: S225-S226. DOI: 10.1016/J.Cbpa.2009.04.562  0.318
2009 Edwards KD, Millar A, Allen F, Eriksson M. A comparison of tobacco and poplar diurnal gene expression with the model plant Arabidopsis thaliana Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 153: S199. DOI: 10.1016/J.Cbpa.2009.04.452  0.818
2008 Finkenstädt B, Heron EA, Komorowski M, Edwards K, Tang S, Harper CV, Davis JR, White MR, Millar AJ, Rand DA. Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics (Oxford, England). 24: 2901-7. PMID 18974172 DOI: 10.1093/Bioinformatics/Btn562  0.791
2008 Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics (Oxford, England). 24: 2071-8. PMID 18664467 DOI: 10.1093/Bioinformatics/Btn367  0.735
2008 Akman OE, Locke JC, Tang S, Carré I, Millar AJ, Rand DA. Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology. 4: 164. PMID 18277380 DOI: 10.1038/Msb.2008.5  0.785
2008 Akman OE, Locke JCW, Tang S, Carre I, Millar AJ, Rand DA. Isoform switching facilitates period control in the Neurospora crassa circadian clock - Corrigendum Molecular Systems Biology. 4: 186-186. DOI: 10.1038/Msb.2008.28  0.643
2007 Kevei E, Gyula P, Fehér B, Tóth R, Viczián A, Kircher S, Rea D, Dorjgotov D, Schäfer E, Millar AJ, Kozma-Bognár L, Nagy F. Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1. Current Biology : Cb. 17: 1456-64. PMID 17683937 DOI: 10.1016/J.Cub.2007.07.018  0.843
2007 Ding Z, Millar AJ, Davis AM, Davis SJ. TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock Plant Cell. 19: 1522-1536. PMID 17496120 DOI: 10.1105/Tpc.106.047241  0.743
2007 Edwards KD, Millar AJ. Analysis of circadian leaf movement rhythms in Arabidopsis thaliana. Methods in Molecular Biology (Clifton, N.J.). 362: 103-13. PMID 17417004 DOI: 10.1007/978-1-59745-257-1_7  0.804
2007 McWatters HG, Kolmos E, Hall A, Doyle MR, Amasino RM, Gyula P, Nagy F, Millar AJ, Davis SJ. ELF4 is required for oscillatory properties of the circadian clock. Plant Physiology. 144: 391-401. PMID 17384164 DOI: 10.1104/Pp.107.096206  0.854
2007 Salathia N, Lynn JR, Millar AJ, King GJ. Detection and resolution of genetic loci affecting circadian period in Brassica oleracea. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 683-92. PMID 17165080 DOI: 10.1007/S00122-006-0468-Y  0.787
2007 Aleksic J, Bizzari F, Cai Y, Davidson B, De Mora K, Ivakhno S, Seshasayee SL, Nicholson J, Wilson J, Elfick A, French C, Kozma-Bognar L, Ma H, Millar A. Development of a novel biosensor for the detection of arsenic in drinking water Iet Synthetic Biology. 1: 87-90. DOI: 10.1049/Iet-Stb:20060002  0.64
2007 Millar A, Rand D, Goryanin I, Saithong T, Edwards K. Dissecting and reconstructing the multi-loop mechanism of the circadian clock Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 146: S229. DOI: 10.1016/J.Cbpa.2007.01.505  0.808
2006 Locke JC, Kozma-Bognár L, Gould PD, Fehér B, Kevei E, Nagy F, Turner MS, Hall A, Millar AJ. Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology. 2: 59. PMID 17102804 DOI: 10.1038/Msb4100102  0.836
2006 Salathia N, Davis SJ, Lynn JR, Michaels SD, Amasino RM, Millar AJ. FLOWERING LOCUS C-dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways. Bmc Plant Biology. 6: 10. PMID 16737527 DOI: 10.1186/1471-2229-6-10  0.865
2006 Gould PD, Locke JC, Larue C, Southern MM, Davis SJ, Hanano S, Moyle R, Milich R, Putterill J, Millar AJ, Hall A. The molecular basis of temperature compensation in the Arabidopsis circadian clock. The Plant Cell. 18: 1177-87. PMID 16617099 DOI: 10.1105/Tpc.105.039990  0.824
2006 Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. The Plant Cell. 18: 639-50. PMID 16473970 DOI: 10.1105/Tpc.105.038315  0.847
2006 Kevei E, Gyula P, Hall A, Kozma-Bognár L, Kim WY, Eriksson ME, Tóth R, Hanano S, Fehér B, Southern MM, Bastow RM, Viczián A, Hibberd V, Davis SJ, Somers DE, ... ... Millar AJ, et al. Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiology. 140: 933-45. PMID 16428597 DOI: 10.1104/Pp.105.074864  0.804
2006 Millar A, Brown P, Saithong T, Salazar D, Locke J, Carre I, Rand D. Mechanistic modelling of flowering regulators based on molecular data Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology. 143. DOI: 10.1016/J.Cbpa.2006.01.054  0.798
2005 Locke JC, Southern MM, Kozma-Bognár L, Hibberd V, Brown PE, Turner MS, Millar AJ. Extension of a genetic network model by iterative experimentation and mathematical analysis. Molecular Systems Biology. 1: 2005.0013. PMID 16729048 DOI: 10.1038/Msb4100018  0.838
2005 Rand DA, Shulgin BV, Salazar JD, Millar AJ. Uncovering the design principles of circadian clocks: mathematical analysis of flexibility and evolutionary goals. Journal of Theoretical Biology. 238: 616-35. PMID 16111710 DOI: 10.1016/J.Jtbi.2005.06.026  0.64
2005 Viczián A, Kircher S, Fejes E, Millar AJ, Schäfer E, Kozma-Bognár L, Nagy F. Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork. Plant & Cell Physiology. 46: 1591-602. PMID 16055924 DOI: 10.1093/Pcp/Pci175  0.846
2005 Dodd AN, Salathia N, Hall A, Kévei E, Tóth R, Nagy F, Hibberd JM, Millar AJ, Webb AA. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science (New York, N.Y.). 309: 630-3. PMID 16040710 DOI: 10.1126/Science.1115581  0.842
2005 Southern MM, Millar AJ. Circadian genetics in the model higher plant, Arabidopsis thaliana. Methods in Enzymology. 393: 23-35. PMID 15817285 DOI: 10.1016/S0076-6879(05)93002-4  0.841
2005 Locke JC, Millar AJ, Turner MS. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. Journal of Theoretical Biology. 234: 383-93. PMID 15784272 DOI: 10.1016/J.Jtbi.2004.11.038  0.796
2005 Edwards KD, Lynn JR, Gyula P, Nagy F, Millar AJ. Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics. 170: 387-400. PMID 15781708 DOI: 10.1534/Genetics.104.035238  0.828
2004 Rand DA, Shulgin BV, Salazar D, Millar AJ. Design principles underlying circadian clocks. Journal of the Royal Society, Interface / the Royal Society. 1: 119-30. PMID 16849158 DOI: 10.1098/Rsif.2004.0014  0.633
2004 Thain SC, Vandenbussche F, Laarhoven LJ, Dowson-Day MJ, Wang ZY, Tobin EM, Harren FJ, Millar AJ, Van Der Straeten D. Circadian rhythms of ethylene emission in Arabidopsis. Plant Physiology. 136: 3751-61. PMID 15516515 DOI: 10.1104/Pp.104.042523  0.855
2004 Bain EL, Millar AJ, Turner MS. The wild-type circadian period of Neurospora is encoded in the residual network of the null frq mutants. Journal of Theoretical Biology. 229: 413-20. PMID 15234207 DOI: 10.1016/J.Jtbi.2004.04.014  0.608
2004 Millar AJ. Input signals to the plant circadian clock. Journal of Experimental Botany. 55: 277-83. PMID 14695902 DOI: 10.1093/Jxb/Erh034  0.539
2003 Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ. The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. The Plant Cell. 15: 2719-29. PMID 14555691 DOI: 10.1105/Tpc.013730  0.856
2003 Eriksson ME, Hanano S, Southern MM, Hall A, Millar AJ. Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta. 218: 159-62. PMID 12955513 DOI: 10.1007/S00425-003-1106-4  0.858
2003 Millar AJ. A suite of photoreceptors entrains the plant circadian clock. Journal of Biological Rhythms. 18: 217-26. PMID 12828279 DOI: 10.1177/0748730403018003004  0.513
2003 Eriksson ME, Millar AJ. The circadian clock. A plant's best friend in a spinning world. Plant Physiology. 132: 732-8. PMID 12805602 DOI: 10.1104/Pp.103.022343  0.664
2003 Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes & Development. 17: 256-68. PMID 12533513 DOI: 10.1101/Gad.244103  0.861
2003 Hanano S, Bastow R, Davis S, Hall A, McWatters H, Ravenscroft V, Kozma-Bogbar L, Nagy F, Millar A. Isolation of circadian mutants in Arabidopsis thaliana: Timing of the induction of cab (tic) is involved in the gating mechanism. Gbm Annual Spring Meeting Mosbach 2003. 2003. DOI: 10.1240/sav_gbm_2003_m_000373  0.745
2002 Hall A, Kozma-Bognár L, Bastow RM, Nagy F, Millar AJ. Distinct regulation of CAB and PHYB gene expression by similar circadian clocks. The Plant Journal : For Cell and Molecular Biology. 32: 529-37. PMID 12445124 DOI: 10.1046/J.1365-313X.2002.01441.X  0.846
2002 Thain SC, Murtas G, Lynn JR, McGrath RB, Millar AJ. The circadian clock that controls gene expression in Arabidopsis is tissue specific. Plant Physiology. 130: 102-10. PMID 12226490 DOI: 10.1104/Pp.005405  0.835
2002 Doyle MR, Davis SJ, Bastow RM, McWatters HG, Kozma-Bognár L, Nagy F, Millar AJ, Amasino RM. The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature. 419: 74-7. PMID 12214234 DOI: 10.1038/Nature00954  0.857
2002 Salathia N, Edwards K, Millar AJ. QTL for timing: a natural diversity of clock genes. Trends in Genetics : Tig. 18: 115-8. PMID 11858828 DOI: 10.1016/S0168-9525(01)02633-6  0.803
2001 Tóth R, Kevei E, Hall A, Millar AJ, Nagy F, Kozma-Bognár L. Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis. Plant Physiology. 127: 1607-16. PMID 11743105 DOI: 10.1104/Pp.010467  0.864
2001 Millar AJ. Light responses of a plastic plant. Nature Genetics. 29: 357-8. PMID 11726915 DOI: 10.1038/Ng1201-357  0.436
2001 Davis SJ, Millar AJ. Watching the hands of the Arabidopsis biological clock Genome Biology. 2. PMID 11276428 DOI: 10.1186/Gb-2001-2-3-Reviews1008  0.698
2001 McWatters HG, Bastow RM, Hall A, Millar AJ. The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature. 408: 716-20. PMID 11130072 DOI: 10.1038/35047079  0.853
2001 Thain SC, Hall A, Millar AJ. Functional independence of circadian clocks that regulate plant gene expression. Current Biology : Cb. 10: 951-6. PMID 10985381 DOI: 10.1016/S0960-9822(00)00630-8  0.71
2001 Hall A, Kozma-Bognár L, Tóth R, Nagy F, Millar AJ. Conditional Circadian Regulation of PHYTOCHROME AGene Expression Plant Physiology. 127: 1808-1818. DOI: 10.1104/Pp.010294  0.854
2000 Millar AJ. Clock proteins: turned over after hours? Current Biology : Cb. 10: R529-31. PMID 10898999 DOI: 10.1016/S0960-9822(00)00586-8  0.497
2000 Reed JW, Nagpal P, Bastow RM, Solomon KS, Dowson-Day MJ, Elumalai RP, Millar AJ. Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiology. 122: 1149-60. PMID 10759510 DOI: 10.1104/Pp.122.4.1149  0.786
2000 Murtas G, Millar AJ. How plants tell the time. Current Opinion in Plant Biology. 3: 43-6. PMID 10679446 DOI: 10.1016/S1369-5266(99)00034-5  0.534
1999 Millar AJ. Biological clocks in Arabidopsis thaliana. The New Phytologist. 141: 175-197. PMID 33862929 DOI: 10.1046/j.1469-8137.1999.00349.x  0.473
1999 Bognár LK, Hall A, Adám E, Thain SC, Nagy F, Millar AJ. The circadian clock controls the expression pattern of the circadian input photoreceptor, phytochrome B. Proceedings of the National Academy of Sciences of the United States of America. 96: 14652-7. PMID 10588760 DOI: 10.1073/Pnas.96.25.14652  0.823
1999 Swarup K, Alonso-Blanco C, Lynn JR, Michaels SD, Amasino RM, Koornneef M, Millar AJ. Natural allelic variation identifies new genes in the Arabidopsis circadian system. The Plant Journal : For Cell and Molecular Biology. 20: 67-77. PMID 10571866 DOI: 10.1046/J.1365-313X.1999.00577.X  0.458
1999 McWatters H, Dunlap JC, Millar AJ. Circadian biology: Clocks for the real world Current Biology. 9. PMID 10508572 DOI: 10.1016/S0960-9822(99)80410-2  0.475
1999 Dowson‐Day MJ, Millar AJ. Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant Journal. 17: 63-71. PMID 10069068 DOI: 10.1046/J.1365-313X.1999.00353.X  0.483
1999 MILLAR AJ. Biological clocks in Arabidopsis thaliana New Phytologist. 141: 175-197. DOI: 10.1046/J.1469-8137.1999.00349.X  0.556
1998 Genoud T, Millar AJ, Nishizawa N, Kay SA, Schäfer E, Nagatani A, Chua NH. An Arabidopsis mutant hypersensitive to red and far-red light signals. The Plant Cell. 10: 889-904. PMID 9634578 DOI: 10.1105/Tpc.10.6.889  0.788
1998 Millar AJ. Molecular Intrigue Between Phototransduction and the Circadian Clock Annals of Botany. 81: 581-587. DOI: 10.1006/Anbo.1998.0595  0.588
1997 Anderson SL, Somers DE, Millar AJ, Hanson K, Chory J, Kay SA. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock Plant Cell. 9: 1727-1743. PMID 9368413 DOI: 10.1105/Tpc.9.10.1727  0.823
1997 Millar AJ. Circadian rhythms: PASsing time. Current Biology : Cb. 7: R474-6. PMID 9259541 DOI: 10.1016/S0960-9822(06)00240-5  0.452
1997 Millar AJ, Kay SA. The genetics of phototransduction and circadian rhythms in arabidopsis Bioessays. 19: 209-214. PMID 9080770 DOI: 10.1002/Bies.950190306  0.79
1997 Bischoff F, Millar AJ, Kay SA, Furuya M. Phytochrome-induced intercellular signalling activates cab::luciferase gene expression Plant Journal. 12: 839-849. DOI: 10.1046/J.1365-313X.1997.12040839.X  0.713
1996 Millar AJ, Kay SA. Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 93: 15491-15496. PMID 8986839 DOI: 10.1073/Pnas.93.26.15491  0.766
1996 Hicks KA, Millar AJ, Carré IA, Somers DE, Straume M, Meeks-Wagner DR, Kay SA. Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science (New York, N.Y.). 274: 790-2. PMID 8864121 DOI: 10.1126/Science.274.5288.790  0.821
1995 Kay SA, Millar AJ. New models in vogue for circadian clocks Cell. 83: 361-364. PMID 8521465 DOI: 10.1016/0092-8674(95)90113-2  0.715
1995 Millar AJ, Straume M, Chory J, Chua NH, Kay SA. The regulation of circadian period by phototransduction pathways in Arabidopsis. Science (New York, N.Y.). 267: 1163-6. PMID 7855596 DOI: 10.1126/Science.7855596  0.816
1995 Millar AJ, Carré IA, Strayer CA, Chua NH, Kay SA. Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science (New York, N.Y.). 267: 1161-3. PMID 7855595 DOI: 10.1126/Science.7855595  0.799
1994 Millar AJ, McGrath RB, Chua NH. Phytochrome phototransduction pathways. Annual Review of Genetics. 28: 325-49. PMID 7893130 DOI: 10.1146/Annurev.Ge.28.120194.001545  0.691
1992 Millar AJ, Short SR, Chua NH, Kay SA. A novel circadian phenotype based on firefly luciferase expression in transgenic plants. The Plant Cell. 4: 1075-87. PMID 1392609 DOI: 10.1105/Tpc.4.9.1075  0.826
1992 Millar AJ, Short SR, Hiratsuka K, Chua N, Kay SA. Firefly luciferase as a reporter of regulated gene expression in higher plants Plant Molecular Biology Reporter. 10: 324-337. DOI: 10.1007/Bf02668909  0.788
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