Joanna C. Chiu, Ph.D. - Publications

Affiliations: 
1998-2004 Biology New York University 
 2004-2010 Center for Advanced Biotechnology and Medicine Rutgers University, New Brunswick, New Brunswick, NJ, United States 
 2010- Entomology University of California, Davis, Davis, CA 
Area:
Plant Physiology, Molecular Biology, Genetics, Drosophila Genetics, Neuroscience
Website:
https://www.clocklab.org/

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Liu X, Chiu JC. Nutrient-sensitive protein O-GlcNAcylation shapes daily biological rhythms. Open Biology. 12: 220215. PMID 36099933 DOI: 10.1098/rsob.220215  0.738
2022 Joshi R, Cai YD, Xia Y, Chiu JC, Emery P. PERIOD Phosphoclusters Control Temperature Compensation of the Circadian Clock. Frontiers in Physiology. 13: 888262. PMID 35721569 DOI: 10.3389/fphys.2022.888262  0.619
2021 Cai YD, Chiu JC. Timeless in animal circadian clocks and beyond. The Febs Journal. PMID 34699674 DOI: 10.1111/febs.16253  0.698
2021 Lewald KM, Abrieux A, Wilson DA, Lee Y, Conner WR, Andreazza F, Beers EH, Burrack HJ, Daane KM, Diepenbrock L, Drummond FA, Fanning PD, Gaffney MT, Hesler SP, Ioriatti C, ... ... Chiu JC, et al. Population genomics of Drosophila suzukii reveal longitudinal population structure and signals of migrations in and out of the continental United States. G3 (Bethesda, Md.). PMID 34599814 DOI: 10.1093/g3journal/jkab343  0.758
2021 Tait G, Mermer S, Stockton D, Lee J, Avosani S, Abrieux A, Anfora G, Beers E, Biondi A, Burrack H, Cha D, Chiu JC, Choi MY, Cloonan K, Crava CM, et al. Drosophila suzukii (Diptera: Drosophilidae): A Decade of Research Towards a Sustainable Integrated Pest Management Program. Journal of Economic Entomology. PMID 34516634 DOI: 10.1093/jee/toab158  0.771
2021 Liu X, Blaženović I, Contreras AJ, Pham TM, Tabuloc CA, Li YH, Ji J, Fiehn O, Chiu JC. Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. Nature Communications. 12: 4173. PMID 34234137 DOI: 10.1038/s41467-021-24301-7  0.758
2021 Durkin SM, Chakraborty M, Abrieux A, Lewald KM, Gadau A, Svetec N, Peng J, Kopyto M, Langer CB, Chiu JC, Emerson JJ, Zhao L. Behavioral and genomic sensory adaptations underlying the pest activity of Drosophila suzukii. Molecular Biology and Evolution. PMID 33586767 DOI: 10.1093/molbev/msab048  0.767
2020 Cai YD, Xue Y, Truong CC, Del Carmen-Li J, Ochoa C, Vanselow JT, Murphy KA, Li YH, Liu X, Kunimoto BL, Zheng H, Zhao C, Zhang Y, Schlosser A, Chiu JC. CK2 Inhibits TIMELESS Nuclear Export and Modulates CLOCK Transcriptional Activity to Regulate Circadian Rhythms. Current Biology : Cb. PMID 33217322 DOI: 10.1016/j.cub.2020.10.061  0.77
2020 Perini CR, Tabuloc CA, Chiu JC, Zalom FG, Stacke RF, Bernardi O, Nelson DR, Guedes JC. Transcriptome Analysis of Pyrethroid-Resistant Chrysodeixis includens (Lepidoptera: Noctuidae) Reveals Overexpression of Metabolic Detoxification Genes. Journal of Economic Entomology. PMID 33137187 DOI: 10.1093/jee/toaa233  0.775
2020 Abrieux A, Xue Y, Cai Y, Lewald KM, Nguyen HN, Zhang Y, Chiu JC. EYES ABSENT and TIMELESS integrate photoperiodic and temperature cues to regulate seasonal physiology in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32541062 DOI: 10.1073/Pnas.2004262117  0.769
2019 Xue Y, Chiu JC, Zhang Y. SUR-8 interacts with PP1-87B to stabilize PERIOD and regulate circadian rhythms in Drosophila. Plos Genetics. 15: e1008475. PMID 31710605 DOI: 10.1371/Journal.Pgen.1008475  0.407
2019 Liu Z, Tabuloc CA, Xue Y, Cai Y, Mcintire P, Niu Y, Lam VH, Chiu JC, Zhang Y. Splice variants of DOMINO control Drosophila circadian behavior and pacemaker neuron maintenance. Plos Genetics. 15: e1008474. PMID 31658266 DOI: 10.1371/Journal.Pgen.1008474  0.786
2019 Li YH, Liu X, Vanselow JT, Zheng H, Schlosser A, Chiu JC. O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression. Plos Genetics. 15: e1007953. PMID 30703153 DOI: 10.1371/Journal.Pgen.1007953  0.79
2019 Tabuloc CA, Lewald KM, Conner WR, Lee Y, Lee EK, Cain AB, Godfrey KE, Arnó J, Agustí N, Perini CR, Guedes JC, Zalom FG, Chiu JC. Sequencing of Tuta absoluta genome to develop SNP genotyping assays for species identification Journal of Pest Science. 92: 1397-1407. DOI: 10.1007/S10340-019-01116-6  0.746
2018 Lam VH, Li YH, Liu X, Murphy KA, Diehl JS, Kwok RS, Chiu JC. CK1α collaborates with DOUBLETIME to regulate PERIOD function in the circadian clock. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30373768 DOI: 10.1523/Jneurosci.0871-18.2018  0.788
2018 Battenberg K, Potter D, Tabuloc CA, Chiu JC, Berry AM. Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms. Frontiers in Plant Science. 9: 1256. PMID 30349546 DOI: 10.3389/Fpls.2018.01256  0.792
2018 Turelli M, Cooper BS, Richardson KM, Ginsberg PS, Peckenpaugh B, Antelope CX, Kim KJ, May MR, Abrieux A, Wilson DA, Bronski MJ, Moore BR, Gao JJ, Eisen MB, Chiu JC, et al. Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila. Current Biology : Cb. PMID 29526588 DOI: 10.1016/J.Cub.2018.02.015  0.774
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.327
2017 Mishra R, Chiu JC, Hua G, Tawari NR, Adang MJ, Sial AA. High throughput sequencing reveals Drosophila suzukii responses to insecticides. Insect Science. PMID 28636268 DOI: 10.1111/1744-7917.12498  0.346
2017 Battenberg K, Lee EK, Chiu JC, Berry AM, Potter D. OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement. Bmc Bioinformatics. 18: 310. PMID 28633662 DOI: 10.1186/S12859-017-1726-5  0.303
2017 Freedman MG, Dingle H, Tabuloc CA, Chiu JC, Yang LH, Zalucki MP. Non-migratory monarch butterflies, Danaus plexippus (L.), retain developmental plasticity and a navigational mechanism associated with migration Biological Journal of the Linnean Society. 123: 265-278. DOI: 10.1093/Biolinnean/Blx148  0.786
2016 Abrieux A, Chiu JC. Oral delivery of dsRNA by microbes: Beyond pest control. Communicative & Integrative Biology. 9: e1236163. PMID 28042376 DOI: 10.1080/19420889.2016.1236163  0.78
2016 Fu J, Murphy KA, Zhou M, Li YH, Lam VH, Tabuloc CA, Chiu JC, Liu Y. Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD. Genes & Development. 30: 1761-75. PMID 27542830 DOI: 10.1101/Gad.281030.116  0.793
2016 Wiman NG, Dalton DT, Anfora G, Biondi A, Chiu JC, Daane KM, Gerdeman B, Gottardello A, Hamby KA, Isaacs R, Grassi A, Ioriatti C, Lee JC, Miller B, Stacconi MV, et al. Drosophila suzukii population response to environment and management strategies. Journal of Pest Science. 89: 653-665. PMID 27471438 DOI: 10.1007/S10340-016-0757-4  0.317
2016 Shearer PW, West JD, Walton VM, Brown PH, Svetec N, Chiu JC. Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival. Bmc Ecology. 16: 11. PMID 27001084 DOI: 10.1186/S12898-016-0070-3  0.706
2016 Murphy KA, Tabuloc CA, Cervantes KR, Chiu JC. Ingestion of genetically modified yeast symbiont reduces fitness of an insect pest via RNA interference. Scientific Reports. 6: 22587. PMID 26931800 DOI: 10.1038/Srep22587  0.771
2016 Kwok RS, Lam VH, Chiu JC. Understanding the role of chromatin remodeling in the regulation of circadian transcription in Drosophila. Fly. 0. PMID 26926115 DOI: 10.1080/19336934.2016.1143993  0.798
2016 Maliti DV, Marsden CD, Main BJ, Govella NJ, Yamasaki Y, Collier TC, Kreppel K, Chiu JC, Lanzaro GC, Ferguson HM, Lee Y. Investigating associations between biting time in the malaria vector Anopheles arabiensis Patton and single nucleotide polymorphisms in circadian clock genes: support for sub-structure among An. arabiensis in the Kilombero valley of Tanzania. Parasites & Vectors. 9: 109. PMID 26920563 DOI: 10.1186/S13071-016-1394-8  0.341
2016 Jasper WC, Linksvayer TA, Atallah J, Friedman D, Chiu JC, Johnson BR. Large Scale Coding Sequence Change Underlies the Evolution of Postdevelopmental Novelty in Honey Bees. Molecular Biology and Evolution. PMID 26912809 DOI: 10.1093/Molbev/Msw022  0.346
2016 Hamby KA, E. Bellamy D, Chiu JC, Lee JC, Walton VM, Wiman NG, York RM, Biondi A. Biotic and abiotic factors impacting development, behavior, phenology, and reproductive biology of Drosophila suzukii Journal of Pest Science. 1-15. DOI: 10.1007/S10340-016-0756-5  0.327
2016 Murphy KA, West JD, Kwok RS, Chiu JC. Accelerating research on Spotted Wing Drosophila management using genomic technologies Journal of Pest Science. 1-11. DOI: 10.1007/S10340-016-0741-Z  0.781
2015 Yildirim E, Chiu JC, Edery I. Identification of light-sensitive phosphorylation sites on PERIOD that regulate the pace of circadian rhythms in Drosophila. Molecular and Cellular Biology. PMID 26711257 DOI: 10.1128/Mcb.00682-15  0.702
2015 Borowiec ML, Lee EK, Chiu JC, Plachetzki DC. Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa. Bmc Genomics. 16: 987. PMID 26596625 DOI: 10.1186/S12864-015-2146-4  0.321
2015 Kwok RS, Li YH, Lei AJ, Edery I, Chiu JC. The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila. Plos Genetics. 11: e1005307. PMID 26132408 DOI: 10.1371/Journal.Pgen.1005307  0.809
2015 Svetec N, Zhao L, Saelao P, Chiu JC, Begun DJ. Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. Bmc Evolutionary Biology. 15: 41. PMID 25887180 DOI: 10.1186/S12862-015-0316-2  0.366
2015 Murphy KA, Unruh TR, Zhou LM, Zalom FG, Shearer PW, Beers EH, Walton VM, Miller B, Chiu JC. Using comparative genomics to develop a molecular diagnostic for the identification of an emerging pest Drosophila suzukii. Bulletin of Entomological Research. 105: 364-72. PMID 25804294 DOI: 10.1017/S0007485315000218  0.63
2015 Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Chiu JC, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522  0.635
2013 Chiu JC, Jiang X, Zhao L, Hamm CA, Cridland JM, Saelao P, Hamby KA, Lee EK, Kwok RS, Zhang G, Zalom FG, Walton VM, Begun DJ. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda, Md.). 3: 2257-71. PMID 24142924 DOI: 10.1534/G3.113.008185  0.758
2013 Johnson BR, Borowiec ML, Chiu JC, Lee EK, Atallah J, Ward PS. Phylogenomics resolves evolutionary relationships among ants, bees, and wasps. Current Biology : Cb. 23: 2058-62. PMID 24094856 DOI: 10.1016/J.Cub.2013.11.056  0.313
2013 Hamby KA, Kwok RS, Zalom FG, Chiu JC. Integrating circadian activity and gene expression profiles to predict chronotoxicity of Drosophila suzukii response to insecticides. Plos One. 8: e68472. PMID 23861907 DOI: 10.1371/Journal.Pone.0068472  0.786
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411  0.781
2011 Chiu JC, Ko HW, Edery I. NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed. Cell. 145: 357-70. PMID 21514639 DOI: 10.1016/J.Cell.2011.04.002  0.746
2011 Chiu JC, Ko HW, Edery I. Erratum: NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed (Cell (2011) 145 (357-370)) Cell. 145. DOI: 10.1016/J.Cell.2011.04.023  0.73
2010 Chiu JC, Low KH, Pike DH, Yildirim E, Edery I. Assaying locomotor activity to study circadian rhythms and sleep parameters in Drosophila. Journal of Visualized Experiments : Jove. PMID 20972399 DOI: 10.3791/2157  0.737
2010 Ko HW, Kim EY, Chiu J, Vanselow JT, Kramer A, Edery I. A hierarchical phosphorylation cascade that regulates the timing of PERIOD nuclear entry reveals novel roles for proline-directed kinases and GSK-3beta/SGG in circadian clocks. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12664-75. PMID 20861372 DOI: 10.1523/Jneurosci.1586-10.2010  0.755
2009 Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R. Gene orthology assessment with OrthologID. Methods in Molecular Biology (Clifton, N.J.). 537: 23-38. PMID 19378138 DOI: 10.1007/978-1-59745-251-9_2  0.575
2008 Chiu JC, Vanselow JT, Kramer A, Edery I. The phospho-occupancy of an atypical SLIMB-binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock. Genes & Development. 22: 1758-72. PMID 18593878 DOI: 10.1101/Gad.1682708  0.664
2006 Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics (Oxford, England). 22: 699-707. PMID 16410324 DOI: 10.1093/Bioinformatics/Btk040  0.598
2002 Chiu JC, Brenner ED, DeSalle R, Nitabach MN, Holmes TC, Coruzzi GM. Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana. Molecular Biology and Evolution. 19: 1066-82. PMID 12082126 DOI: 10.1093/Oxfordjournals.Molbev.A004165  0.755
2001 Lacombe B, Becker D, Hedrich R, DeSalle R, Hollmann M, Kwak JM, Schroeder JI, Le Novère N, Nam HG, Spalding EP, Tester M, Turano FJ, Chiu J, Coruzzi G. The identity of plant glutamate receptors. Science (New York, N.Y.). 292: 1486-7. PMID 11379626 DOI: 10.1126/Science.292.5521.1486B  0.601
2001 Oliveira IC, Brenner E, Chiu J, Hsieh MH, Kouranov A, Lam HM, Shin MJ, Coruzzi G. Metabolite and light regulation of metabolism in plants: lessons from the study of a single biochemical pathway. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Mã©Dicas E Biolã³Gicas / Sociedade Brasileira De Biofã­Sica ... [Et Al.]. 34: 567-75. PMID 11323742 DOI: 10.1590/S0100-879X2001000500003  0.772
1999 Chiu J, DeSalle R, Lam HM, Meisel L, Coruzzi G. Molecular evolution of glutamate receptors: A primitive signaling mechanism that existed before plants and animals diverged Molecular Biology and Evolution. 16: 826-838. PMID 10368960 DOI: 10.1093/Oxfordjournals.Molbev.A026167  0.787
1998 Lam HM, Chiu J, Hsieh MH, Meisel L, Oliveira IC, Shin M, Coruzzi G. Glutamate-receptor genes in plants [5] Nature. 396: 125-126. PMID 9823891 DOI: 10.1038/24066  0.76
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