Year |
Citation |
Score |
2023 |
Muzio G, O'Bray L, Meng-Papaxanthos L, Klatt J, Fischer K, Borgwardt K. networkGWAS: a network-based approach to discover genetic associations. Bioinformatics (Oxford, England). 39. PMID 37285313 DOI: 10.1093/bioinformatics/btad370 |
0.306 |
|
2020 |
Höllerer S, Papaxanthos L, Gumpinger AC, Fischer K, Beisel C, Borgwardt K, Benenson Y, Jeschek M. Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping. Nature Communications. 11: 3551. PMID 32669542 DOI: 10.1038/S41467-020-17222-4 |
0.341 |
|
2020 |
Gumpinger AC, Rieck B, Grimm DG, Borgwardt K. Network-guided search for genetic heterogeneity between gene pairs. Bioinformatics (Oxford, England). PMID 32573681 DOI: 10.1093/Bioinformatics/Btaa581 |
0.377 |
|
2019 |
Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925 |
0.581 |
|
2018 |
Gumpinger AC, Roqueiro D, Grimm DG, Borgwardt KM. Methods and Tools in Genome-wide Association Studies. Methods in Molecular Biology (Clifton, N.J.). 1819: 93-136. PMID 30421401 DOI: 10.1007/978-1-4939-8618-7_5 |
0.37 |
|
2017 |
Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954 |
0.561 |
|
2017 |
Llinares-López F, Papaxanthos L, Bodenham D, Roqueiro D, Investigators C, Borgwardt K. Genome-wide genetic heterogeneity discovery with categorical covariates. Bioinformatics (Oxford, England). PMID 28200033 DOI: 10.1093/bioinformatics/btx071 |
0.332 |
|
2016 |
Grimm DG, Roqueiro D, Salome P, Kleeberger S, Greshake B, Zhu W, Liu C, Lippert C, Stegle O, Schölkopf B, Weigel D, Borgwardt K. easyGWAS: A Cloud-based Platform for Comparing the Results of Genome-wide Association Studies. The Plant Cell. PMID 27986896 DOI: 10.1105/Tpc.16.00551 |
0.506 |
|
2016 |
Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986 |
0.532 |
|
2016 |
Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27803326 DOI: 10.1073/Pnas.1615268113 |
0.492 |
|
2016 |
McGaughran A, Rödelsperger C, Grimm DG, Meyer JM, Moreno E, Morgan K, Leaver M, Serobyan V, Rakitsch B, Borgwardt KM, Sommer RJ. Genomic profiles of diversification and genotype-phenotype association in island nematode lineages. Molecular Biology and Evolution. PMID 27189551 DOI: 10.1093/Molbev/Msw093 |
0.356 |
|
2015 |
Llinares-López F, Grimm DG, Bodenham DA, Gieraths U, Sugiyama M, Rowan B, Borgwardt K. Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. Bioinformatics (Oxford, England). 31: i240-i249. PMID 26072488 DOI: 10.1093/Bioinformatics/Btv263 |
0.436 |
|
2015 |
Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. Plos Genetics. 11: e1004920. PMID 25569172 DOI: 10.1371/Journal.Pgen.1004920 |
0.55 |
|
2015 |
Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Epigenetic variation in a nearly isogenic population. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004920.G002 |
0.445 |
|
2013 |
Azencott CA, Grimm D, Sugiyama M, Kawahara Y, Borgwardt KM. Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics (Oxford, England). 29: i171-9. PMID 23812981 DOI: 10.1093/Bioinformatics/Btt238 |
0.308 |
|
2013 |
Drewe P, Stegle O, Hartmann L, Kahles A, Bohnert R, Wachter A, Borgwardt K, Rätsch G. Accurate detection of differential RNA processing. Nucleic Acids Research. 41: 5189-98. PMID 23585274 DOI: 10.1093/Nar/Gkt211 |
0.305 |
|
2013 |
Fusi N, Lippert C, Borgwardt K, Lawrence ND, Stegle O. Detecting regulatory gene-environment interactions with unmeasured environmental factors. Bioinformatics (Oxford, England). 29: 1382-9. PMID 23559640 DOI: 10.1093/Bioinformatics/Btt148 |
0.375 |
|
2013 |
Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K. Accurate indel prediction using paired-end short reads. Bmc Genomics. 14: 132. PMID 23442375 DOI: 10.1186/1471-2164-14-132 |
0.487 |
|
2013 |
Rakitsch B, Lippert C, Stegle O, Borgwardt K. A Lasso multi-marker mixed model for association mapping with population structure correction. Bioinformatics (Oxford, England). 29: 206-14. PMID 23175758 DOI: 10.1093/Bioinformatics/Bts669 |
0.404 |
|
2011 |
Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature. 480: 245-9. PMID 22057020 DOI: 10.1038/Nature10555 |
0.443 |
|
2011 |
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics. 43: 956-63. PMID 21874002 DOI: 10.1038/Ng.911 |
0.489 |
|
2011 |
Kam-Thong T, Pütz B, Karbalai N, Müller-Myhsok B, Borgwardt K. Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. Bioinformatics (Oxford, England). 27: i214-21. PMID 21685073 DOI: 10.1093/bioinformatics/btr218 |
0.322 |
|
2011 |
Grimm DG, Hagmann J, Koenig D, Weigel D, Borgwardt K. Support vector machines for finding deletions and short insertions using paired-end short reads F1000research. 2. DOI: 10.7490/F1000Research.2126.1 |
0.41 |
|
2011 |
Klotzbücher K, Kobayashi Y, Shervashidze N, Stegle O, Müller-Myhsok B, Weigel D, Borgwardt K. Efficient branch-and-bound techniques for two-locus association mapping Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S11-A3 |
0.415 |
|
2010 |
Lippert C, Stegle O, Nickisch H, Borgwardt K, Weigel D. Experimental design for genome-wide association studies F1000research. 1. DOI: 10.7490/F1000Research.324.1 |
0.488 |
|
2010 |
Stegle O, Drewe P, Bohnert R, Borgwardt K, Rätsch G. Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts Nature Precedings. 2010: 1-11. DOI: 10.1038/Npre.2010.4437.1 |
0.306 |
|
2008 |
Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, et al. The genome of the simian and human malaria parasite Plasmodium knowlesi. Nature. 455: 799-803. PMID 18843368 DOI: 10.1038/Nature07306 |
0.325 |
|
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