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Avinash Sreedasyam, Ph.D. - Publications

Affiliations: 
2012 The University of Alabama in Huntsville, Huntsville, AL, United States 
Area:
Molecular Biology, Botany Biology
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bhattarai G, Rhein HS, Sreedasyam A, Lovell JT, Khanal S, Grimwood J, Schmutz J, Jenkins J, Chee PW, Pisani C, Randall J, Conner PJ. Transcriptome analysis under pecan scab infection reveals the molecular mechanisms of the defense response in pecans. Plos One. 19: e0313878. PMID 39570928 DOI: 10.1371/journal.pone.0313878  0.307
2023 Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, et al. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Research. PMID 37526283 DOI: 10.1093/nar/gkad616  0.392
2022 Hu R, Zhang J, Jawdy S, Sreedasyam A, Lipzen A, Wang M, Ng V, Daum C, Keymanesh K, Liu D, Lu H, Ranjan P, Chen JG, Muchero W, Tschaplinski TJ, et al. Comparative genomics analysis of drought response between obligate CAM and C photosynthesis plants. Journal of Plant Physiology. 277: 153791. PMID 36027837 DOI: 10.1016/j.jplph.2022.153791  0.325
2020 Torkamaneh D, Laroche J, Valliyodan B, O'Donoughue L, Cober E, Rajcan I, Abdelnoor RV, Sreedasyam A, Schmutz J, Nguyen HT, Belzile F. Soybean (Glycine max) Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics. Plant Biotechnology Journal. PMID 32794321 DOI: 10.1111/Pbi.13466  0.359
2020 Chen ZJ, Sreedasyam A, Ando A, Song Q, De Santiago LM, Hulse-Kemp AM, Ding M, Ye W, Kirkbride RC, Jenkins J, Plott C, Lovell J, Lin YM, Vaughn R, Liu B, et al. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics. PMID 32313247 DOI: 10.1038/S41588-020-0614-5  0.422
2020 Zhang J, Hu R, Sreedasyam A, Garcia TM, Lipzen A, Wang M, Yerramsetty P, Liu D, Ng V, Schmutz J, Cushman JC, Borland AM, Pasha A, Provart NJ, Chen JG, et al. Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism. Gigascience. 9. PMID 32135007 DOI: 10.1093/Gigascience/Giaa018  0.348
2019 Fernandez-Pozo N, Haas FB, Meyberg R, Ullrich KK, Hiss M, Perroud PF, Hanke S, Kratz V, Powell AF, Vesty EF, Daum CG, Zane M, Lipzen A, Sreedasyam A, Grimwood J, et al. PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. The Plant Journal : For Cell and Molecular Biology. PMID 31714620 DOI: 10.1111/Tpj.14607  0.444
2019 Furches A, Kainer D, Weighill D, Large A, Jones P, Walker AM, Romero J, Gazolla JGFM, Joubert W, Shah M, Streich J, Ranjan P, Schmutz J, Sreedasyam A, Macaya-Sanz D, et al. Finding New Cell Wall Regulatory Genes in Using Multiple Lines of Evidence. Frontiers in Plant Science. 10: 1249. PMID 31649710 DOI: 10.3389/Fpls.2019.01249  0.436
2019 Weighill D, Macaya-Sanz D, DiFazio SP, Joubert W, Shah M, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D. Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. Frontiers in Genetics. 10: 487. PMID 31214244 DOI: 10.3389/Fgene.2019.00487  0.309
2019 Weighill D, Jones P, Bleker C, Ranjan P, Shah M, Zhao N, Martin M, DiFazio S, Macaya-Sanz D, Schmutz J, Sreedasyam A, Tschaplinski T, Tuskan G, Jacobson D. Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships. Frontiers in Genetics. 10: 417. PMID 31134130 DOI: 10.3389/Fgene.2019.00417  0.38
2019 Conde D, Perales M, Sreedasyam A, Tuskan GA, Lloret A, Badenes ML, González-Melendi P, Ríos G, Allona I. Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification. Frontiers in Plant Science. 10: 412. PMID 31024588 DOI: 10.3389/Fpls.2019.00412  0.315
2018 Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, et al. The genomic landscape of molecular responses to natural drought stress in Panicum hallii. Nature Communications. 9: 5213. PMID 30523281 DOI: 10.1038/S41467-018-07669-X  0.418
2018 Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C, Costet L, Yahiaoui N, Healey A, Sims D, Cherukuri Y, ... Sreedasyam A, et al. A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications. 9: 2638. PMID 29980662 DOI: 10.1038/S41467-018-05051-5  0.378
2018 Zuo C, Blow M, Sreedasyam A, Kuo RC, Ramamoorthy GK, Torres-Jerez I, Li G, Wang M, Dilworth D, Barry K, Udvardi M, Schmutz J, Tang Y, Xu Y. Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing. Biotechnology For Biofuels. 11: 170. PMID 29951114 DOI: 10.1186/S13068-018-1167-Z  0.33
2018 Seaver SMD, Lerma-Ortiz C, Conrad N, Mikaili A, Sreedasyam A, Hanson AD, Henry CS. PlantSEED Enables Automated Annotation and Reconstruction of Plant Primary Metabolism with Improved Compartmentalization and Comparative Consistency. The Plant Journal : For Cell and Molecular Biology. PMID 29924895 DOI: 10.1111/Tpj.14003  0.348
2018 Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates J, Fujita T, Guyon-Debast A, Lang D, Lin J, ... ... Sreedasyam A, et al. The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data. The Plant Journal : For Cell and Molecular Biology. PMID 29681058 DOI: 10.1111/Tpj.13940  0.397
2018 Weighill D, Jones P, Shah M, Ranjan P, Muchero W, Schmutz J, Sreedasyam A, Macaya-Sanz D, Sykes R, Zhao N, Martin MZ, DiFazio S, Tschaplinski TJ, Tuskan G, Jacobson D. Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery Frontiers in Energy Research. 6. DOI: 10.3389/Fenrg.2018.00030  0.45
2017 McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE. The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization. The Plant Journal : For Cell and Molecular Biology. PMID 29161754 DOI: 10.1111/Tpj.13781  0.431
2016 Yang Y, Labbé J, Muchero W, Yang X, Jawdy SS, Kennedy M, Johnson J, Sreedasyam A, Schmutz J, Tuskan GA, Chen JG. Genome-wide analysis of lectin receptor-like kinases in Populus. Bmc Genomics. 17: 699. PMID 27580945 DOI: 10.1186/S12864-016-3026-2  0.305
2016 Lovell JT, Schwartz S, Lowry DB, Shakirov EV, Bonnette JE, Weng X, Wang M, Johnson J, Sreedasyam A, Plott C, Jenkins J, Schmutz J, Juenger TE. Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass. Genome Research. PMID 26953271 DOI: 10.1101/Gr.198135.115  0.454
2015 Larsen PE, Sreedasyam A, Trivedi G, Desai S, Dai Y, Cseke LJ, Collart FR. Multi-Omics Approach Identifies Molecular Mechanisms of Plant-Fungus Mycorrhizal Interaction. Frontiers in Plant Science. 6: 1061. PMID 26834754 DOI: 10.3389/Fpls.2015.01061  0.623
2011 Larsen PE, Sreedasyam A, Trivedi G, Podila GK, Cseke LJ, Collart FR. Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. Bmc Systems Biology. 5: 70. PMID 21569493 DOI: 10.1186/1752-0509-5-70  0.614
2010 Larsen PE, Trivedi G, Sreedasyam A, Lu V, Podila GK, Collart FR. Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome. Plos One. 5: e9780. PMID 20625404 DOI: 10.1371/Journal.Pone.0009780  0.699
2010 Larsen PE, Trivedi G, Sreedasyam A, Lu V, Podila GK, Collart FR. Relationship between the RPK expression levels and gene model characteristics. Plos One. DOI: 10.1371/Journal.Pone.0009780.G002  0.687
2009 Podila GK, Sreedasyam A, Muratet MA. PopulusRhizosphere and the Ectomycorrhizal Interactome Critical Reviews in Plant Sciences. 28: 359-367. DOI: 10.1080/07352680903241220  0.433
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