Kranthi Varala - Publications

Affiliations: 
Purdue University, West Lafayette, IN, United States 

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications. 10: 1569. PMID 30952851 DOI: 10.1038/s41467-019-09522-1  0.64
2018 Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29769331 DOI: 10.1073/pnas.1721487115  0.64
2016 Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". Bmc Genomics. 17: 92. PMID 26843062 DOI: 10.1186/s12864-016-2410-2  0.68
2015 Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM. "Hit-and-Run" leaves its mark: Catalyst transcription factors and chromatin modification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26108710 DOI: 10.1002/bies.201400205  0.68
2015 Li Y, Varala K, Coruzzi GM. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics : Tig. 31: 509-15. PMID 26072453 DOI: 10.1016/j.tig.2015.05.005  0.68
2014 Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. Plos Genetics. 10: e1004487. PMID 25032823 DOI: 10.1371/journal.pgen.1004487  0.68
2014 Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 10371-6. PMID 24958886 DOI: 10.1073/pnas.1404657111  0.68
2014 Li Y, Varala K, Hudson ME. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science. 5: 156. PMID 24808898 DOI: 10.3389/fpls.2014.00156  0.68
2014 Léran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends in Plant Science. 19: 5-9. PMID 24055139 DOI: 10.1016/j.tplants.2013.08.008  0.68
2012 Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/journal.pone.0047043  0.68
2012 Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO. Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. Bmc Plant Biology. 12: 177. PMID 23031057 DOI: 10.1186/1471-2229-12-177  0.68
2012 Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP. Repeat associated small RNAs vary among parents and following hybridization in maize. Proceedings of the National Academy of Sciences of the United States of America. 109: 10444-9. PMID 22689990 DOI: 10.1073/pnas.1202073109  0.68
2012 Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. Bmc Genomics. 13: 142. PMID 22524439 DOI: 10.1186/1471-2164-13-142  0.68
2011 Varala K, Swaminathan K, Li Y, Hudson ME. Rapid genotyping of soybean cultivars using high throughput sequencing. Plos One. 6: e24811. PMID 21949759 DOI: 10.1371/journal.pone.0024811  0.68
2011 Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proceedings of the National Academy of Sciences of the United States of America. 108: 7472-7. PMID 21482769 DOI: 10.1073/pnas.1103457108  0.68
2010 Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics. 185: 727-44. PMID 20421607 DOI: 10.1534/genetics.109.113753  0.68
2010 Toth AL, Varala K, Henshaw MT, Rodriguez-Zas SL, Hudson ME, Robinson GE. Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages. Proceedings. Biological Sciences / the Royal Society. 277: 2139-48. PMID 20236980 DOI: 10.1098/rspb.2010.0090  0.68
2010 Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/gb-2010-11-2-r12  0.68
2009 Schwarz D, Robertson HM, Feder JL, Varala K, Hudson ME, Ragland GJ, Hahn DA, Berlocher SH. Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella. Bmc Genomics. 10: 633. PMID 20035631 DOI: 10.1186/1471-2164-10-633  0.68
2007 Toth AL, Varala K, Newman TC, Miguez FE, Hutchison SK, Willoughby DA, Simons JF, Egholm M, Hunt JH, Hudson ME, Robinson GE. Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science (New York, N.Y.). 318: 441-4. PMID 17901299 DOI: 10.1126/science.1146647  0.68
2007 Swaminathan K, Varala K, Hudson ME. Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey Bmc Genomics. 8. PMID 17524145 DOI: 10.1186/1471-2164-8-132  0.68
Show low-probability matches.