Ying Li - Publications

Affiliations: 
Purdue University, West Lafayette, IN, United States 
Area:
Plant Genomics

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Xiao Y, Li Y, Ouyang L, Yin A, Xu B, Zhang L, Chen J, Liu J. A banana transcriptional repressor MaAP2a participates in fruit starch degradation during postharvest ripening. Frontiers in Plant Science. 13: 1036719. PMID 36438126 DOI: 10.3389/fpls.2022.1036719  0.42
2022 An D, Song L, Li Y, Shen L, Miao P, Wang Y, Liu D, Jiang L, Wang F, Yang J. Comprehensive analysis of lysine lactylation in . Frontiers in Genetics. 13: 1014225. PMID 36386791 DOI: 10.3389/fgene.2022.1014225  0.302
2021 Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w  0.757
2021 Liu X, Blaženović I, Contreras AJ, Pham TM, Tabuloc CA, Li YH, Ji J, Fiehn O, Chiu JC. Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. Nature Communications. 12: 4173. PMID 34234137 DOI: 10.1038/s41467-021-24301-7  0.637
2021 McCoy RM, Julian R, Kumar SRV, Ranjan R, Varala K, Li Y. A Systems Biology Approach to Identify Essential Epigenetic Regulators for Specific Biological Processes in Plants. Plants (Basel, Switzerland). 10. PMID 33668664 DOI: 10.3390/plants10020364  0.797
2020 Cai YD, Xue Y, Truong CC, Del Carmen-Li J, Ochoa C, Vanselow JT, Murphy KA, Li YH, Liu X, Kunimoto BL, Zheng H, Zhao C, Zhang Y, Schlosser A, Chiu JC. CK2 Inhibits TIMELESS Nuclear Export and Modulates CLOCK Transcriptional Activity to Regulate Circadian Rhythms. Current Biology : Cb. PMID 33217322 DOI: 10.1016/j.cub.2020.10.061  0.657
2020 Zhang X, Ménard R, Li Y, Coruzzi GM, Heitz T, Shen WH, Berr A. SDG8 Potentiates the Sustainable Transcriptional Induction of the Genes and During Plant Defense Response. Frontiers in Plant Science. 11: 277. PMID 32218796 DOI: 10.3389/Fpls.2020.00277  0.65
2019 Li Y, Brooks M, Yeoh-Wang J, McCoy RM, Rock TM, Pasquino A, Moon CI, Patrick RM, Tanurdzic M, Ruffel S, Widhalm JR, McCombie WR, Coruzzi GM. SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling. Plant Physiology. PMID 31641075 DOI: 10.1104/Pp.19.00682  0.773
2019 Yao T, Park BS, Mao HZ, Seo JS, Ohama N, Li Y, Yu N, Mustafa NFB, Huang CH, Chua NH. Regulation of flowering time by SPL10/MED25 module in Arabidopsis. The New Phytologist. PMID 31125430 DOI: 10.1111/Nph.15954  0.601
2019 Li YH, Liu X, Vanselow JT, Zheng H, Schlosser A, Chiu JC. O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression. Plos Genetics. 15: e1007953. PMID 30703153 DOI: 10.1371/Journal.Pgen.1007953  0.649
2018 Lam VH, Li YH, Liu X, Murphy KA, Diehl JS, Kwok RS, Chiu JC. CK1α collaborates with DOUBLETIME to regulate PERIOD function in the circadian clock. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30373768 DOI: 10.1523/Jneurosci.0871-18.2018  0.666
2018 Para A, Li Y, Coruzzi GM. μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts. Methods in Molecular Biology (Clifton, N.J.). 1761: 249-261. PMID 29525963 DOI: 10.1007/978-1-4939-7747-5_19  0.785
2016 Fu J, Murphy KA, Zhou M, Li YH, Lam VH, Tabuloc CA, Chiu JC, Liu Y. Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD. Genes & Development. 30: 1761-75. PMID 27542830 DOI: 10.1101/Gad.281030.116  0.656
2016 Wang C, Cui HM, Huang TH, Liu TK, Hou XL, Li Y. Identification and Validation of Reference Genes for RT-qPCR Analysis in Non-Heading Chinese Cabbage Flowers. Frontiers in Plant Science. 7: 811. PMID 27375663 DOI: 10.3389/fpls.2016.00811  0.302
2016 Duan W, Ren J, Li Y, Liu T, Song X, Chen Z, Huang Z, Hou X, Li Y. Conservation and Expression Patterns Divergence of Ascorbic Acid d-mannose/l-galactose Pathway Genes in Brassica rapa. Frontiers in Plant Science. 7: 778. PMID 27313597 DOI: 10.3389/fpls.2016.00778  0.357
2016 Zhang D, Li Y, Wang R, Li Y, Shi P, Kan Z, Pang X. Inhibition of REST Suppresses Proliferation and Migration in Glioblastoma Cells. International Journal of Molecular Sciences. 17. PMID 27153061 DOI: 10.3390/ijms17050664  0.31
2016 Li Y, Schulz VP, Deng C, Li G, Shen Y, Tusi BK, Ma G, Stees J, Qiu Y, Steiner LA, Zhou L, Zhao K, Bungert J, Gallagher PG, Huang S. Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation. Nucleic Acids Research. PMID 27141965 DOI: 10.1093/Nar/Gkw327  0.426
2016 Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". Bmc Genomics. 17: 92. PMID 26843062 DOI: 10.1186/S12864-016-2410-2  0.785
2015 Deng C, Li Y, Zhou L, Cho J, Patel B, Terada N, Li Y, Bungert J, Qiu Y, Huang S. HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development. Cell Reports. PMID 26725110 DOI: 10.1016/J.Celrep.2015.12.007  0.314
2015 Li Q, Li Y, Moose SP, Hudson ME. Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. Bmc Plant Biology. 15: 168. PMID 26139102 DOI: 10.1186/s12870-015-0549-7  0.543
2015 Kwok RS, Li YH, Lei AJ, Edery I, Chiu JC. The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila. Plos Genetics. 11: e1005307. PMID 26132408 DOI: 10.1371/Journal.Pgen.1005307  0.739
2015 Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM. "Hit-and-Run" leaves its mark: Catalyst transcription factors and chromatin modification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26108710 DOI: 10.1002/Bies.201400205  0.772
2015 Li Y, Varala K, Coruzzi GM. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics : Tig. 31: 509-15. PMID 26072453 DOI: 10.1016/J.Tig.2015.05.005  0.797
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2  0.746
2014 Li Y, Krouk G, Coruzzi GM, Ruffel S. Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants. Journal of Experimental Botany. 65: 5601-10. PMID 24963003 DOI: 10.1093/Jxb/Eru263  0.765
2014 Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 10371-6. PMID 24958886 DOI: 10.1073/Pnas.1404657111  0.775
2014 Nan H, Cao D, Zhang D, Li Y, Lu S, Tang L, Yuan X, Liu B, Kong F. GmFT2a and GmFT5a redundantly and differentially regulate flowering through interaction with and upregulation of the bZIP transcription factor GmFDL19 in soybean. Plos One. 9: e97669. PMID 24845624 DOI: 10.1371/journal.pone.0097669  0.314
2014 Li Y, Varala K, Hudson ME. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science. 5: 156. PMID 24808898 DOI: 10.3389/Fpls.2014.00156  0.765
2012 Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/Journal.Pone.0047043  0.762
2011 Varala K, Swaminathan K, Li Y, Hudson ME. Rapid genotyping of soybean cultivars using high throughput sequencing. Plos One. 6: e24811. PMID 21949759 DOI: 10.1371/Journal.Pone.0024811  0.732
2011 Li Y, Swaminathan K, Hudson ME. Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings. Plant Physiology. 156: 2124-40. PMID 21653191 DOI: 10.1104/pp.111.179416  0.62
2010 Wu Q, Song J, Sun Y, Suo F, Li C, Luo H, Liu Y, Li Y, Zhang X, Yao H, Li X, Hu S, Sun C. Transcript profiles of Panax quinquefolius from flower, leaf and root bring new insights into genes related to ginsenosides biosynthesis and transcriptional regulation. Physiologia Plantarum. 138: 134-49. PMID 19947964 DOI: 10.1111/j.1399-3054.2009.01309.x  0.308
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