| Year |
Citation |
Score |
| 2024 |
Ranjan R, Srijan S, Balekuttira S, Agarwal T, Ramey M, Dobbins M, Kuhn R, Wang X, Hudson K, Li Y, Varala K. Organ-delimited gene regulatory networks provide high accuracy in candidate transcription factor selection across diverse processes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2322751121. PMID 38652750 DOI: 10.1073/pnas.2322751121 |
0.718 |
|
| 2021 |
Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w |
0.765 |
|
| 2021 |
Liu X, Blaženović I, Contreras AJ, Pham TM, Tabuloc CA, Li YH, Ji J, Fiehn O, Chiu JC. Hexosamine biosynthetic pathway and O-GlcNAc-processing enzymes regulate daily rhythms in protein O-GlcNAcylation. Nature Communications. 12: 4173. PMID 34234137 DOI: 10.1038/s41467-021-24301-7 |
0.599 |
|
| 2021 |
McCoy RM, Julian R, Kumar SRV, Ranjan R, Varala K, Li Y. A Systems Biology Approach to Identify Essential Epigenetic Regulators for Specific Biological Processes in Plants. Plants (Basel, Switzerland). 10. PMID 33668664 DOI: 10.3390/plants10020364 |
0.785 |
|
| 2020 |
Cai YD, Xue Y, Truong CC, Del Carmen-Li J, Ochoa C, Vanselow JT, Murphy KA, Li YH, Liu X, Kunimoto BL, Zheng H, Zhao C, Zhang Y, Schlosser A, Chiu JC. CK2 Inhibits TIMELESS Nuclear Export and Modulates CLOCK Transcriptional Activity to Regulate Circadian Rhythms. Current Biology : Cb. PMID 33217322 DOI: 10.1016/j.cub.2020.10.061 |
0.614 |
|
| 2020 |
Zhang X, Ménard R, Li Y, Coruzzi GM, Heitz T, Shen WH, Berr A. SDG8 Potentiates the Sustainable Transcriptional Induction of the Genes and During Plant Defense Response. Frontiers in Plant Science. 11: 277. PMID 32218796 DOI: 10.3389/Fpls.2020.00277 |
0.586 |
|
| 2019 |
Li Y, Brooks M, Yeoh-Wang J, McCoy RM, Rock TM, Pasquino A, Moon CI, Patrick RM, Tanurdzic M, Ruffel S, Widhalm JR, McCombie WR, Coruzzi GM. SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling. Plant Physiology. PMID 31641075 DOI: 10.1104/Pp.19.00682 |
0.773 |
|
| 2019 |
Yao T, Park BS, Mao HZ, Seo JS, Ohama N, Li Y, Yu N, Mustafa NFB, Huang CH, Chua NH. Regulation of flowering time by SPL10/MED25 module in Arabidopsis. The New Phytologist. PMID 31125430 DOI: 10.1111/Nph.15954 |
0.511 |
|
| 2019 |
Li YH, Liu X, Vanselow JT, Zheng H, Schlosser A, Chiu JC. O-GlcNAcylation of PERIOD regulates its interaction with CLOCK and timing of circadian transcriptional repression. Plos Genetics. 15: e1007953. PMID 30703153 DOI: 10.1371/Journal.Pgen.1007953 |
0.606 |
|
| 2018 |
Lam VH, Li YH, Liu X, Murphy KA, Diehl JS, Kwok RS, Chiu JC. CK1α collaborates with DOUBLETIME to regulate PERIOD function in the circadian clock. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30373768 DOI: 10.1523/Jneurosci.0871-18.2018 |
0.619 |
|
| 2018 |
Para A, Li Y, Coruzzi GM. μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts. Methods in Molecular Biology (Clifton, N.J.). 1761: 249-261. PMID 29525963 DOI: 10.1007/978-1-4939-7747-5_19 |
0.777 |
|
| 2016 |
Fu J, Murphy KA, Zhou M, Li YH, Lam VH, Tabuloc CA, Chiu JC, Liu Y. Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD. Genes & Development. 30: 1761-75. PMID 27542830 DOI: 10.1101/Gad.281030.116 |
0.614 |
|
| 2016 |
Li Y, Schulz VP, Deng C, Li G, Shen Y, Tusi BK, Ma G, Stees J, Qiu Y, Steiner LA, Zhou L, Zhao K, Bungert J, Gallagher PG, Huang S. Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation. Nucleic Acids Research. PMID 27141965 DOI: 10.1093/Nar/Gkw327 |
0.303 |
|
| 2016 |
Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". Bmc Genomics. 17: 92. PMID 26843062 DOI: 10.1186/S12864-016-2410-2 |
0.777 |
|
| 2015 |
Deng C, Li Y, Zhou L, Cho J, Patel B, Terada N, Li Y, Bungert J, Qiu Y, Huang S. HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development. Cell Reports. PMID 26725110 DOI: 10.1016/J.Celrep.2015.12.007 |
0.312 |
|
| 2015 |
Li Q, Li Y, Moose SP, Hudson ME. Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. Bmc Plant Biology. 15: 168. PMID 26139102 DOI: 10.1186/s12870-015-0549-7 |
0.495 |
|
| 2015 |
Kwok RS, Li YH, Lei AJ, Edery I, Chiu JC. The Catalytic and Non-catalytic Functions of the Brahma Chromatin-Remodeling Protein Collaborate to Fine-Tune Circadian Transcription in Drosophila. Plos Genetics. 11: e1005307. PMID 26132408 DOI: 10.1371/Journal.Pgen.1005307 |
0.662 |
|
| 2015 |
Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM. "Hit-and-Run" leaves its mark: Catalyst transcription factors and chromatin modification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26108710 DOI: 10.1002/Bies.201400205 |
0.773 |
|
| 2015 |
Li Y, Varala K, Coruzzi GM. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics : Tig. 31: 509-15. PMID 26072453 DOI: 10.1016/J.Tig.2015.05.005 |
0.772 |
|
| 2015 |
Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2 |
0.755 |
|
| 2014 |
Li Y, Krouk G, Coruzzi GM, Ruffel S. Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants. Journal of Experimental Botany. 65: 5601-10. PMID 24963003 DOI: 10.1093/Jxb/Eru263 |
0.767 |
|
| 2014 |
Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 10371-6. PMID 24958886 DOI: 10.1073/Pnas.1404657111 |
0.774 |
|
| 2014 |
Nan H, Cao D, Zhang D, Li Y, Lu S, Tang L, Yuan X, Liu B, Kong F. GmFT2a and GmFT5a redundantly and differentially regulate flowering through interaction with and upregulation of the bZIP transcription factor GmFDL19 in soybean. Plos One. 9: e97669. PMID 24845624 DOI: 10.1371/journal.pone.0097669 |
0.314 |
|
| 2014 |
Li Y, Varala K, Hudson ME. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science. 5: 156. PMID 24808898 DOI: 10.3389/Fpls.2014.00156 |
0.748 |
|
| 2012 |
Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/Journal.Pone.0047043 |
0.745 |
|
| 2011 |
Varala K, Swaminathan K, Li Y, Hudson ME. Rapid genotyping of soybean cultivars using high throughput sequencing. Plos One. 6: e24811. PMID 21949759 DOI: 10.1371/Journal.Pone.0024811 |
0.727 |
|
| 2011 |
Li Y, Swaminathan K, Hudson ME. Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings. Plant Physiology. 156: 2124-40. PMID 21653191 DOI: 10.1104/pp.111.179416 |
0.543 |
|
| 2010 |
Wu Q, Song J, Sun Y, Suo F, Li C, Luo H, Liu Y, Li Y, Zhang X, Yao H, Li X, Hu S, Sun C. Transcript profiles of Panax quinquefolius from flower, leaf and root bring new insights into genes related to ginsenosides biosynthesis and transcriptional regulation. Physiologia Plantarum. 138: 134-49. PMID 19947964 DOI: 10.1111/j.1399-3054.2009.01309.x |
0.307 |
|
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