Year |
Citation |
Score |
2022 |
Nikolić M, Brudar S, Coutsias E, Dill KA, Lukšič M, Simmerling C, Hribar-Lee B. BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International Journal of Molecular Sciences. 23. PMID 36499696 DOI: 10.3390/ijms232315371 |
0.645 |
|
2022 |
Yadav AK, Bandyopadhyay P, Coutsias EA, Dill KA. Crustwater: Modeling Hydrophobic Solvation. The Journal of Physical Chemistry. B. 126: 6052-6062. PMID 35926838 DOI: 10.1021/acs.jpcb.2c02695 |
0.636 |
|
2021 |
Shekhar M, Terashi G, Gupta C, Sarkar D, Debussche G, Sisco NJ, Nguyen J, Mondal A, Vant J, Fromme P, Van Horn WD, Tajkhorshid E, Kihara D, Dill K, Perez A, et al. CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps. Matter. 4: 3195-3216. PMID 35874311 DOI: 10.1016/j.matt.2021.09.004 |
0.602 |
|
2021 |
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, et al. Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature Methods. PMID 33542514 DOI: 10.1038/s41592-020-01051-w |
0.517 |
|
2020 |
Liu C, Brini E, Perez A, Dill KA. Computing ligands bound to proteins using MELD-accelerated MD. Journal of Chemical Theory and Computation. PMID 32910647 DOI: 10.1021/Acs.Jctc.0C00543 |
0.623 |
|
2020 |
Agozzino L, Balázsi G, Wang J, Dill KA. How Do Cells Adapt? Stories Told in Landscapes. Annual Review of Chemical and Biomolecular Engineering. 11: 155-182. PMID 32513086 DOI: 10.1146/Annurev-Chembioeng-011720-103410 |
0.322 |
|
2020 |
Padhorny D, Porter KA, Ignatov M, Alekseenko A, Beglov D, Kotelnikov S, Ashizawa R, Desta I, Alam N, Sun Z, Brini E, Dill K, Furman OS, Vajda S, Kozakov D. ClusPro in rounds 38-45 of CAPRI: Toward combining template-based methods with free docking. Proteins. PMID 32142178 DOI: 10.1002/Prot.25887 |
0.379 |
|
2020 |
Ghosh K, Dixit PD, Agozzino L, Dill KA. The Maximum Caliber Variational Principle for Nonequilibria. Annual Review of Physical Chemistry. PMID 32075515 DOI: 10.1146/Annurev-Physchem-071119-040206 |
0.307 |
|
2020 |
Nassar R, Perez A, Robertson JC, Liu C, Brini E, Dill KA. Determining Protein Structures using Accelerated MD Simulations and Noisy Data Biophysical Journal. 118: 141a. DOI: 10.1016/J.Bpj.2019.11.895 |
0.599 |
|
2020 |
Liu C, Brini E, Perez A, Dill KA. Computing Poses of Ligands Bound to Proteins using MELD Accelerated Molecular Dynamics Biophysical Journal. 118: 323a. DOI: 10.1016/J.Bpj.2019.11.1814 |
0.587 |
|
2019 |
Kotelnikov S, Alekseenko A, Liu C, Ignatov M, Padhorny D, Brini E, Lukin M, Coutsias E, Dill KA, Kozakov D. Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. Journal of Computer-Aided Molecular Design. PMID 31879831 DOI: 10.1007/S10822-019-00257-1 |
0.676 |
|
2019 |
Santra M, Dill KA, de Graff AMR. Proteostasis collapse is a driver of cell aging and death. Proceedings of the National Academy of Sciences of the United States of America. PMID 31619571 DOI: 10.1073/Pnas.1906592116 |
0.591 |
|
2019 |
Agozzino L, Dill K. Minimal constraints for maximum caliber analysis of dissipative steady-state systems. Physical Review. E. 100: 010105. PMID 31499924 DOI: 10.1103/Physreve.100.010105 |
0.301 |
|
2019 |
Robertson JC, Nassar R, Liu C, Brini E, Dill KA, Perez A. NMR-assisted protein structure prediction with MELDxMD. Proteins. PMID 31350773 DOI: 10.1002/Prot.25788 |
0.61 |
|
2019 |
Brini E, Kozakov D, Dill KA. Predicting protein dimer structures using MELD x MD. Journal of Chemical Theory and Computation. PMID 30908034 DOI: 10.1021/Acs.Jctc.8B01208 |
0.426 |
|
2019 |
Wagoner JA, Dill KA. Mechanisms for achieving high speed and efficiency in biomolecular machines. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850521 DOI: 10.1073/Pnas.1812149116 |
0.305 |
|
2019 |
Dixit PD, Dill KA. Building Markov state models using optimal transport theory. The Journal of Chemical Physics. 150: 054105. PMID 30736685 DOI: 10.1063/1.5086681 |
0.32 |
|
2019 |
Dill KA. Great organizing principles. Current Biology : Cb. 6: 1204. PMID 8939580 DOI: 10.1016/S0960-9822(96)00691-4 |
0.364 |
|
2019 |
Perez A, Shekhar M, Terashi G, Kihara D, Dill KA, Tajkhorshid E, Singharoy A. MAINMAST-MELD-MDFF: Denovo Structure-Determination with Data-Guided Molecular Dynamics Biophysical Journal. 116: 287a-288a. DOI: 10.1016/J.Bpj.2018.11.1553 |
0.566 |
|
2018 |
Urbic T, Dill KA. Hierarchy of anomalies in the two-dimensional Mercedes-Benz model of water. Physical Review. E. 98. PMID 32025599 DOI: 10.1103/Physreve.98.032116 |
0.35 |
|
2018 |
Kastelic M, Dill KA, Kalyuzhnyi YV, Vlachy V. Controlling the viscosities of antibody solutions through control of their binding sites. Journal of Molecular Liquids. 270: 234-242. PMID 30906093 DOI: 10.1016/J.Molliq.2017.11.106 |
0.301 |
|
2018 |
Urbic T, Dill KA. Water is a cagey liquid. Journal of the American Chemical Society. PMID 30461279 DOI: 10.1021/Jacs.8B08856 |
0.34 |
|
2018 |
Ignatov M, Liu C, Alekseenko A, Sun Z, Padhorny D, Kotelnikov S, Kazennov A, Grebenkin I, Kholodov Y, Kolosvari I, Perez A, Dill K, Kozakov D. Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge. Journal of Computer-Aided Molecular Design. PMID 30421350 DOI: 10.1007/S10822-018-0176-0 |
0.597 |
|
2018 |
Robertson JC, Perez A, Dill KA. MELD x MD Folds Nonthreadables, Giving Native Structures and Populations. Journal of Chemical Theory and Computation. PMID 30407805 DOI: 10.1021/Acs.Jctc.8B00886 |
0.623 |
|
2018 |
Agozzino L, Dill KA. Protein evolution speed depends on its stability and abundance and on chaperone concentrations. Proceedings of the National Academy of Sciences of the United States of America. PMID 30150386 DOI: 10.1073/Pnas.1810194115 |
0.345 |
|
2018 |
Santra M, Dill KA, de Graff AMR. How Do Chaperones Protect a Cell's Proteins from Oxidative Damage? Cell Systems. PMID 29886110 DOI: 10.1016/J.Cels.2018.05.001 |
0.626 |
|
2018 |
Perez A, Sittel F, Stock G, Dill KA. MELD-path efficiently computes conformational transitions, including multiple and diverse paths. Journal of Chemical Theory and Computation. PMID 29547695 DOI: 10.1021/Acs.Jctc.7B01294 |
0.6 |
|
2018 |
Dixit PD, Dill KA. Caliber Corrected Markov Modeling (C2M2): Correcting Equilibrium Markov Models. Journal of Chemical Theory and Computation. PMID 29323898 DOI: 10.1021/Acs.Jctc.7B01126 |
0.348 |
|
2018 |
Dixit PD, Wagoner J, Weistuch C, Pressé S, Ghosh K, Dill KA. Perspective: Maximum caliber is a general variational principle for dynamical systems. The Journal of Chemical Physics. 148: 010901. PMID 29306272 DOI: 10.1063/1.5012990 |
0.639 |
|
2018 |
Robertson J, Perez A, Dill K. Meld Folds Nonthreadable Proteins Biophysical Journal. 114: 574a. DOI: 10.1016/J.Bpj.2017.11.3139 |
0.581 |
|
2017 |
Urbic T, Dill KA. Analytical theory of the hydrophobic effect of solutes in water. Physical Review. E. 96: 032101. PMID 29347026 DOI: 10.1103/Physreve.96.032101 |
0.38 |
|
2017 |
Perez A, Morrone JA, Dill KA. Accelerating physical simulations of proteins by leveraging external knowledge. Wiley Interdisciplinary Reviews. Computational Molecular Science. 7. PMID 28959358 DOI: 10.1002/Wcms.1309 |
0.641 |
|
2017 |
Brini E, Fennell CJ, Fernandez-Serra M, Hribar-Lee B, Lukšič M, Dill KA. How Water's Properties Are Encoded in Its Molecular Structure and Energies. Chemical Reviews. PMID 28949513 DOI: 10.1021/Acs.Chemrev.7B00259 |
0.709 |
|
2017 |
Guseva E, Zuckermann RN, Dill KA. Foldamer hypothesis for the growth and sequence differentiation of prebiotic polymers. Proceedings of the National Academy of Sciences of the United States of America. PMID 28831002 DOI: 10.1073/Pnas.1620179114 |
0.591 |
|
2017 |
Santra M, Farrell DW, Dill KA. Bacterial proteostasis balances energy and chaperone utilization efficiently. Proceedings of the National Academy of Sciences of the United States of America. PMID 28292901 DOI: 10.1073/Pnas.1620646114 |
0.63 |
|
2017 |
Morrone JA, Perez A, MacCallum JL, Dill KA. Computed binding of peptides to proteins with MELD-accelerated molecular dynamics. Journal of Chemical Theory and Computation. PMID 28042966 DOI: 10.1021/Acs.Jctc.6B00977 |
0.586 |
|
2017 |
Morrone JA, Perez A, Deng Q, Ha SN, Holloway MK, Sawyer TK, Sherborne BS, Brown FK, Dill KA. Molecular Simulations Identify Binding Poses and Approximate Affinities of Stapled α-Helical Peptides to MDM2 and MDMX. Journal of Chemical Theory and Computation. PMID 28042965 DOI: 10.1021/Acs.Jctc.6B00978 |
0.601 |
|
2016 |
Perez A, Morrone JA, Brini E, MacCallum JL, Dill KA. Blind protein structure prediction using accelerated free-energy simulations. Science Advances. 2: e1601274. PMID 27847872 DOI: 10.1126/Sciadv.1601274 |
0.633 |
|
2016 |
Brini E, Paranahewage SS, Fennell CJ, Dill KA. Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the SAMPL5 molecules. Journal of Computer-Aided Molecular Design. PMID 27632227 DOI: 10.1007/S10822-016-9961-9 |
0.727 |
|
2016 |
Ghosh K, de Graff AM, Sawle L, Dill KA. The Role of Proteome Physical Chemistry in Cell Behavior. The Journal of Physical Chemistry. B. PMID 27513457 DOI: 10.1021/Acs.Jpcb.6B04886 |
0.305 |
|
2016 |
Perez A, Morrone JA, Simmerling C, Dill KA. Advances in free-energy-based simulations of protein folding and ligand binding. Current Opinion in Structural Biology. 36: 25-31. PMID 26773233 DOI: 10.1016/J.Sbi.2015.12.002 |
0.637 |
|
2016 |
Wagoner JA, Dill K. The Nonequilibrium Statistical Thermodynamics of Biological Cycles Biophysical Journal. 110: 349a-350a. DOI: 10.1016/J.Bpj.2015.11.1882 |
0.31 |
|
2016 |
perez a, Brini E, Morrone J, Wagoner J, MacCallum J, Dill K. Combining Physics and Knowledge in Blind Protein Structure Prediction Biophysical Journal. 110: 345a. DOI: 10.1016/J.Bpj.2015.11.1855 |
0.622 |
|
2015 |
de Graff AM, Hazoglou MJ, Dill KA. Highly Charged Proteins: The Achilles' Heel of Aging Proteomes. Structure (London, England : 1993). PMID 26724998 DOI: 10.1016/J.Str.2015.11.006 |
0.301 |
|
2015 |
Perez A, MacCallum JL, Coutsias EA, Dill KA. Constraint methods that accelerate free-energy simulations of biomolecules. The Journal of Chemical Physics. 143: 243143. PMID 26723628 DOI: 10.1063/1.4936911 |
0.738 |
|
2015 |
Mobley DL, Bayly CI, Cooper MD, Shirts MR, Dill KA. Correction to Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations. Journal of Chemical Theory and Computation. 11: 1347. PMID 26579779 DOI: 10.1021/Acs.Jctc.5B00154 |
0.594 |
|
2015 |
Perez A, MacCallum JL, Brini E, Simmerling C, Dill KA. Grid-Based Backbone Correction to the ff12SB Protein Force Field for Implicit-Solvent Simulations. Journal of Chemical Theory and Computation. 11: 4770-9. PMID 26574266 DOI: 10.1021/Acs.Jctc.5B00662 |
0.614 |
|
2015 |
Perez A, MacCallum JL, Dill KA. Accelerating molecular simulations of proteins using Bayesian inference on weak information. Proceedings of the National Academy of Sciences of the United States of America. 112: 11846-51. PMID 26351667 DOI: 10.1073/Pnas.1515561112 |
0.643 |
|
2015 |
Hazoglou MJ, Walther V, Dixit PD, Dill KA. Communication: Maximum caliber is a general variational principle for nonequilibrium statistical mechanics. The Journal of Chemical Physics. 143: 051104. PMID 26254635 DOI: 10.1063/1.4928193 |
0.308 |
|
2015 |
MacCallum JL, Perez A, Dill KA. Determining protein structures by combining semireliable data with atomistic physical models by Bayesian inference. Proceedings of the National Academy of Sciences of the United States of America. 112: 6985-90. PMID 26038552 DOI: 10.1073/Pnas.1506788112 |
0.597 |
|
2015 |
Kastelic M, Kalyuzhnyi YV, Hribar-Lee B, Dill KA, Vlachy V. Protein aggregation in salt solutions. Proceedings of the National Academy of Sciences of the United States of America. 112: 6766-70. PMID 25964322 DOI: 10.1073/Pnas.1507303112 |
0.386 |
|
2015 |
Maitra A, Dill KA. Bacterial growth laws reflect the evolutionary importance of energy efficiency. Proceedings of the National Academy of Sciences of the United States of America. 112: 406-11. PMID 25548180 DOI: 10.1073/Pnas.1421138111 |
0.302 |
|
2015 |
Presse S, Ghosh K, Lee J, Dill KA. Reply to C. Tsallis' "conceptual inadequacy of the Shore and Johnson axioms for wide classes of complex systems" Entropy. 17: 5043-5046. DOI: 10.3390/E17075043 |
0.603 |
|
2015 |
Maitra A, Dill KA. How Do Bacterial Growth Rates Relate to Evolutionary Fitness Landscapes for Energy-Efficiency? Biophysical Journal. 108: 313a. DOI: 10.1016/J.Bpj.2014.11.1703 |
0.31 |
|
2015 |
Perez A, MacCallum J, Dill KA. Using Physics and Heuristics in Protein Structure Prediction Biophysical Journal. 108: 210a. DOI: 10.1016/J.Bpj.2014.11.1164 |
0.63 |
|
2015 |
Wagoner JA, Dill K, Pande V. Adaptive Boundaries in Multi-Resolution Simulations Biophysical Journal. 108: 182a. DOI: 10.1016/J.Bpj.2014.11.1007 |
0.545 |
|
2014 |
Sharma VK, Patapoff TW, Kabakoff B, Pai S, Hilario E, Zhang B, Li C, Borisov O, Kelley RF, Chorny I, Zhou JZ, Dill KA, Swartz TE. In silico selection of therapeutic antibodies for development: viscosity, clearance, and chemical stability. Proceedings of the National Academy of Sciences of the United States of America. 111: 18601-6. PMID 25512516 DOI: 10.1073/Pnas.1421779112 |
0.304 |
|
2014 |
Li L, Fennell CJ, Dill KA. Small molecule solvation changes due to the presence of salt are governed by the cost of solvent cavity formation and dispersion. The Journal of Chemical Physics. 141: 22D518. PMID 25494789 DOI: 10.1063/1.4900890 |
0.715 |
|
2014 |
Drechsel NJ, Fennell CJ, Dill KA, Villà-Freixa J. TRIFORCE: Tessellated Semianalytical Solvent Exposed Surface Areas and Derivatives. Journal of Chemical Theory and Computation. 10: 4121-4132. PMID 25221446 DOI: 10.1021/Ct5002818 |
0.703 |
|
2014 |
Cohen P, Dill KA, Jaswal SS. Modeling the solvation of nonpolar amino acids in guanidinium chloride solutions. The Journal of Physical Chemistry. B. 118: 10618-23. PMID 25141127 DOI: 10.1021/Jp506379R |
0.34 |
|
2014 |
Dixit PD, Dill KA. Inferring Microscopic Kinetic Rates from Stationary State Distributions. Journal of Chemical Theory and Computation. 10: 3002-3005. PMID 25136269 DOI: 10.1021/Ct5001389 |
0.326 |
|
2014 |
Rollins GC, Dill KA. General mechanism of two-state protein folding kinetics. Journal of the American Chemical Society. 136: 11420-7. PMID 25056406 DOI: 10.1021/Ja5049434 |
0.814 |
|
2014 |
Perez A, Roy A, Kasavajhala K, Wagaman A, Dill KA, MacCallum JL. Extracting representative structures from protein conformational ensembles. Proteins. 82: 2671-80. PMID 24975328 DOI: 10.1002/Prot.24633 |
0.586 |
|
2014 |
Pressé S, Peterson J, Lee J, Elms P, MacCallum JL, Marqusee S, Bustamante C, Dill K. Single molecule conformational memory extraction: p5ab RNA hairpin. The Journal of Physical Chemistry. B. 118: 6597-603. PMID 24898871 DOI: 10.1021/Jp500611F |
0.643 |
|
2014 |
Lukši? M, Fennell CJ, Dill KA. Using interpolation for fast and accurate calculation of ion-ion interactions. The Journal of Physical Chemistry. B. 118: 8017-25. PMID 24625086 DOI: 10.1021/Jp501141J |
0.67 |
|
2014 |
Li L, Dill KA, Fennell CJ. Testing the semi-explicit assembly model of aqueous solvation in the SAMPL4 challenge. Journal of Computer-Aided Molecular Design. 28: 259-64. PMID 24474161 DOI: 10.1007/S10822-014-9712-8 |
0.736 |
|
2014 |
Roy A, Perez A, Dill KA, Maccallum JL. Computing the relative stabilities and the per-residue components in protein conformational changes. Structure (London, England : 1993). 22: 168-75. PMID 24316402 DOI: 10.1016/J.Str.2013.10.015 |
0.646 |
|
2014 |
Li L, Fennell CJ, Dill KA. Field-SEA: a model for computing the solvation free energies of nonpolar, polar, and charged solutes in water. The Journal of Physical Chemistry. B. 118: 6431-7. PMID 24299013 DOI: 10.1021/Jp4115139 |
0.717 |
|
2014 |
Perez A, MacCallum JL, Dill KA. Hydophobic Guided Protein Folding Biophysical Journal. 106: 438a. DOI: 10.1016/J.Bpj.2013.11.2466 |
0.628 |
|
2013 |
Rocklin GJ, Mobley DL, Dill KA, Hünenberger PH. Calculating the binding free energies of charged species based on explicit-solvent simulations employing lattice-sum methods: an accurate correction scheme for electrostatic finite-size effects. The Journal of Chemical Physics. 139: 184103. PMID 24320250 DOI: 10.1063/1.4826261 |
0.799 |
|
2013 |
Pressé S, Ghosh K, Lee J, Dill KA. Nonadditive entropies yield probability distributions with biases not warranted by the data. Physical Review Letters. 111: 180604. PMID 24237501 DOI: 10.1103/Physrevlett.111.180604 |
0.597 |
|
2013 |
Rocklin GJ, Mobley DL, Dill KA. Calculating the sensitivity and robustness of binding free energy calculations to force field parameters. Journal of Chemical Theory and Computation. 9: 3072-3083. PMID 24015114 DOI: 10.1021/Ct400315Q |
0.792 |
|
2013 |
Rocklin GJ, Boyce SE, Fischer M, Fish I, Mobley DL, Shoichet BK, Dill KA. Blind prediction of charged ligand binding affinities in a model binding site. Journal of Molecular Biology. 425: 4569-83. PMID 23896298 DOI: 10.1016/J.Jmb.2013.07.030 |
0.787 |
|
2013 |
Rocklin GJ, Mobley DL, Dill KA. Separated topologies--a method for relative binding free energy calculations using orientational restraints. The Journal of Chemical Physics. 138: 085104. PMID 23464180 DOI: 10.1063/1.4792251 |
0.793 |
|
2013 |
Kortkhonjia E, Brandman R, Zhou JZ, Voelz VA, Chorny I, Kabakoff B, Patapoff TW, Dill KA, Swartz TE. Probing antibody internal dynamics with fluorescence anisotropy and molecular dynamics simulations. Mabs. 5: 306-22. PMID 23396076 DOI: 10.4161/Mabs.23651 |
0.631 |
|
2013 |
Pressé S, Lee J, Dill KA. Extracting conformational memory from single-molecule kinetic data. The Journal of Physical Chemistry. B. 117: 495-502. PMID 23259771 DOI: 10.1021/Jp309420U |
0.638 |
|
2013 |
Pressé S, Ghosh K, Lee J, Dill KA. Principles of maximum entropy and maximum caliber in statistical physics Reviews of Modern Physics. 85: 1115-1141. DOI: 10.1103/Revmodphys.85.1115 |
0.628 |
|
2013 |
Perez A, MacCallum J, Dill K. 171 Protein structure prediction with limited data Journal of Biomolecular Structure and Dynamics. 31: 110-110. DOI: 10.1080/07391102.2013.786413 |
0.626 |
|
2013 |
Perez A, MacCallum J, Dill KA. Meld: Modeling Peptide-Protein Interactions Biophysical Journal. 104: 399a. DOI: 10.1016/J.Bpj.2012.11.2224 |
0.634 |
|
2012 |
Perez A, Yang Z, Bahar I, Dill KA, MacCallum JL. FlexE: Using elastic network models to compare models of protein structure. Journal of Chemical Theory and Computation. 8: 3985-3991. PMID 25530735 DOI: 10.1021/Ct300148F |
0.634 |
|
2012 |
Urbi? T, Fennell CJ, Dill KA. A microscopic theory of solvation of monoions. Acta Chimica Slovenica. 59: 554-8. PMID 24061310 |
0.706 |
|
2012 |
Dill KA, MacCallum JL. The protein-folding problem, 50 years on. Science (New York, N.Y.). 338: 1042-6. PMID 23180855 DOI: 10.1126/Science.1219021 |
0.392 |
|
2012 |
Butterfoss GL, Yoo B, Jaworski JN, Chorny I, Dill KA, Zuckermann RN, Bonneau R, Kirshenbaum K, Voelz VA. De novo structure prediction and experimental characterization of folded peptoid oligomers. Proceedings of the National Academy of Sciences of the United States of America. 109: 14320-5. PMID 22908242 DOI: 10.1073/Pnas.1209945109 |
0.754 |
|
2012 |
Peterson GJ, Pressé S, Peterson KS, Dill KA. Simulated evolution of protein-protein interaction networks with realistic topology. Plos One. 7: e39052. PMID 22768057 DOI: 10.1371/Journal.Pone.0039052 |
0.77 |
|
2012 |
Lukši? M, Urbic T, Hribar-Lee B, Dill KA. Simple model of hydrophobic hydration. The Journal of Physical Chemistry. B. 116: 6177-86. PMID 22564051 DOI: 10.1021/Jp300743A |
0.39 |
|
2012 |
Fennell CJ, Li L, Dill KA. Simple liquid models with corrected dielectric constants. The Journal of Physical Chemistry. B. 116: 6936-44. PMID 22397577 DOI: 10.1021/Jp3002383 |
0.724 |
|
2012 |
Ge H, Pressé S, Ghosh K, Dill KA. Markov processes follow from the principle of maximum caliber. The Journal of Chemical Physics. 136: 064108. PMID 22360170 DOI: 10.1063/1.3681941 |
0.632 |
|
2012 |
Kehoe CW, Fennell CJ, Dill KA. Testing the semi-explicit assembly solvation model in the SAMPL3 community blind test. Journal of Computer-Aided Molecular Design. 26: 563-8. PMID 22205387 DOI: 10.1007/S10822-011-9536-8 |
0.796 |
|
2012 |
Fennell CJ, Kehoe CW, Dill KA. Accurate Solutions with the Semi-Explicit Assembly Water Model Biophysical Journal. 102: 169a. DOI: 10.1016/J.Bpj.2011.11.917 |
0.8 |
|
2012 |
MacCallum JL, Perez A, Dill KA. Physics Based Protein Structure Refinement Biophysical Journal. 102: 619a-620a. DOI: 10.1016/J.Bpj.2011.11.3376 |
0.634 |
|
2012 |
Presse S, Lee J, Peterson G, MacCallum J, Dill KA. Extracting Kinetic Models from Single Molecule Experiments by Direct Inference Biophysical Journal. 102: 597a. DOI: 10.1016/J.Bpj.2011.11.3251 |
0.646 |
|
2012 |
Rollins G, Dill K. A Simple Model of Protein Folding Kinetics Based on Native Topology Biophysical Journal. 102: 458a. DOI: 10.1016/J.Bpj.2011.11.2511 |
0.799 |
|
2012 |
Perez A, MacCallum J, Hummel M, Coutsias E, Dill KA. Using Delaunay Tessellation of Proteins to Improve Current ENM Biophysical Journal. 102: 450a-451a. DOI: 10.1016/J.Bpj.2011.11.2471 |
0.756 |
|
2011 |
Fennell CJ, Dill KA. Physical Modeling of Aqueous Solvation. Journal of Statistical Physics. 145: 209-226. PMID 25143658 DOI: 10.1007/S10955-011-0232-9 |
0.735 |
|
2011 |
MacCallum JL, Pérez A, Schnieders MJ, Hua L, Jacobson MP, Dill KA. Assessment of protein structure refinement in CASP9. Proteins. 79: 74-90. PMID 22069034 DOI: 10.1002/Prot.23131 |
0.349 |
|
2011 |
Pressé S, Ghosh K, Dill KA. Modeling stochastic dynamics in biochemical systems with feedback using maximum caliber. The Journal of Physical Chemistry. B. 115: 6202-12. PMID 21524067 DOI: 10.1021/Jp111112S |
0.633 |
|
2011 |
Fennell CJ, Kehoe CW, Dill KA. Modeling aqueous solvation with semi-explicit assembly. Proceedings of the National Academy of Sciences of the United States of America. 108: 3234-9. PMID 21300905 DOI: 10.1073/Pnas.1017130108 |
0.804 |
|
2011 |
Schmit JD, Ghosh K, Dill K. What drives amyloid molecules to assemble into oligomers and fibrils? Biophysical Journal. 100: 450-8. PMID 21244841 DOI: 10.1016/J.Bpj.2010.11.041 |
0.309 |
|
2011 |
Voelz VA, Dill KA, Chorny I. Peptoid conformational free energy landscapes from implicit-solvent molecular simulations in AMBER. Biopolymers. 96: 639-50. PMID 21184487 DOI: 10.1002/Bip.21575 |
0.681 |
|
2011 |
Mobley DL, Baker JR, Barber AE, Fennell CJ, Dill KA. Correction to “Charge Asymmetries in Hydration of Polar Solutes” The Journal of Physical Chemistry B. 115: 15145-15145. DOI: 10.1021/Jp210487K |
0.735 |
|
2010 |
Pressé S, Ghosh K, Phillips R, Dill KA. Dynamical fluctuations in biochemical reactions and cycles. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 031905. PMID 21230106 DOI: 10.1103/Physreve.82.031905 |
0.608 |
|
2010 |
Ghosh K, Dill K. Cellular proteomes have broad distributions of protein stability Biophysical Journal. 99: 3996-4002. PMID 21156142 DOI: 10.1016/J.Bpj.2010.10.036 |
0.344 |
|
2010 |
Hribar-Lee B, Dill KA, Vlachy V. Receptacle model of salting-in by tetramethylammonium ions. The Journal of Physical Chemistry. B. 114: 15085-91. PMID 21028768 DOI: 10.1021/Jp108052R |
0.342 |
|
2010 |
Peterson GJ, Pressé S, Dill KA. Nonuniversal power law scaling in the probability distribution of scientific citations. Proceedings of the National Academy of Sciences of the United States of America. 107: 16023-7. PMID 20805513 DOI: 10.1073/Pnas.1010757107 |
0.751 |
|
2010 |
Urbic T, Dill KA. A statistical mechanical theory for a two-dimensional model of water. The Journal of Chemical Physics. 132: 224507. PMID 20550408 DOI: 10.1063/1.3454193 |
0.32 |
|
2010 |
Kalyuzhnyi YV, Vlachy V, Dill KA. Aqueous alkali halide solutions: can osmotic coefficients be explained on the basis of the ionic sizes alone? Physical Chemistry Chemical Physics : Pccp. 12: 6260-6. PMID 20405084 DOI: 10.1039/B924735A |
0.306 |
|
2010 |
Fennell CJ, Kehoe C, Dill KA. Oil/water transfer is partly driven by molecular shape, not just size. Journal of the American Chemical Society. 132: 234-40. PMID 19961159 DOI: 10.1021/Ja906399E |
0.805 |
|
2010 |
Presse S, Ghosh K, Dill KA. Predicting the Toggle Switch Bistability from Maximum Uncertainty Principles Biophysical Journal. 98: 740a. DOI: 10.1016/J.Bpj.2009.12.4056 |
0.614 |
|
2010 |
Kehoe C, Fennell C, Dill K. A New Semi-Explicit Solvation Model: Fast Physics for Better Results Biophysical Journal. 98: 737a. DOI: 10.1016/J.Bpj.2009.12.4041 |
0.815 |
|
2010 |
MacCallum JL, Rollins GC, Dill KA. Improving Protein Structure Prediction by Smoothing Energy Functions Biophysical Journal. 98: 615a. DOI: 10.1016/J.Bpj.2009.12.3354 |
0.797 |
|
2010 |
Rollins GC, MacCallum JL, Dill KA. Iterative Assembly of Protein Fragments Biophysical Journal. 98: 461a. DOI: 10.1016/J.Bpj.2009.12.2504 |
0.789 |
|
2010 |
Fennell CJ, Kehoe C, Dill KA. Capturing the Roles of Attraction and Shape in Nonpolar Solvation Biophysical Journal. 98: 390a. DOI: 10.1016/J.Bpj.2009.12.2100 |
0.744 |
|
2009 |
Mobley DL, Bayly CI, Cooper MD, Shirts MR, Dill KA. Small molecule hydration free energies in explicit solvent: An extensive test of fixed-charge atomistic simulations. Journal of Chemical Theory and Computation. 5: 350-358. PMID 20150953 DOI: 10.1021/Ct800409D |
0.635 |
|
2009 |
Bizjak A, Urbic T, Vlachy V, Dill KA. Theory for the three-dimensional Mercedes-Benz model of water. The Journal of Chemical Physics. 131: 194504. PMID 19929057 DOI: 10.1063/1.3259970 |
0.364 |
|
2009 |
Fennell CJ, Bizjak A, Vlachy V, Dill KA, Sarupria S, Rajamani S, Garde S. Ion pairing in molecular simulations of aqueous alkali halide solutions. The Journal of Physical Chemistry. B. 113: 14837-8. PMID 19807139 DOI: 10.1021/jp908484v |
0.671 |
|
2009 |
Druchok M, Vlachy V, Dill KA. Computer simulations of ionenes, hydrophobic ions with unusual solution thermodynamic properties. The ion-specific effects. The Journal of Physical Chemistry. B. 113: 14270-6. PMID 19799433 DOI: 10.1021/Jp906727H |
0.347 |
|
2009 |
Wu D, Ghosh K, Inamdar M, Lee HJ, Fraser S, Dill K, Phillips R. Trajectory approach to two-state kinetics of single particles on sculpted energy landscapes. Physical Review Letters. 103: 050603. PMID 19792475 DOI: 10.1103/Physrevlett.103.050603 |
0.312 |
|
2009 |
Boyce SE, Mobley DL, Rocklin GJ, Graves AP, Dill KA, Shoichet BK. Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. Journal of Molecular Biology. 394: 747-63. PMID 19782087 DOI: 10.1016/J.Jmb.2009.09.049 |
0.795 |
|
2009 |
MacCallum JL, Hua L, Schnieders MJ, Pande VS, Jacobson MP, Dill KA. Assessment of the protein-structure refinement category in CASP8. Proteins. 77: 66-80. PMID 19714776 DOI: 10.1002/Prot.22538 |
0.558 |
|
2009 |
Ghosh K, Dill KA. Computing protein stabilities from their chain lengths. Proceedings of the National Academy of Sciences of the United States of America. 106: 10649-54. PMID 19541647 DOI: 10.1073/Pnas.0903995106 |
0.372 |
|
2009 |
Mobley DL, Dill KA. Binding of small-molecule ligands to proteins: "what you see" is not always "what you get". Structure (London, England : 1993). 17: 489-98. PMID 19368882 DOI: 10.1016/J.Str.2009.02.010 |
0.61 |
|
2009 |
Druchok M, Vlachy V, Dill KA. Explicit-water molecular dynamics study of a short-chain 3,3 ionene in solutions with sodium halides. The Journal of Chemical Physics. 130: 134903. PMID 19355776 DOI: 10.1063/1.3078268 |
0.373 |
|
2009 |
Mobley DL, Bayly CI, Cooper MD, Dill KA. Predictions of hydration free energies from all-atom molecular dynamics simulations. The Journal of Physical Chemistry. B. 113: 4533-7. PMID 19271713 DOI: 10.1021/Jp806838B |
0.613 |
|
2009 |
Fennell CJ, Bizjak A, Vlachy V, Dill KA. Ion pairing in molecular simulations of aqueous alkali halide solutions. The Journal of Physical Chemistry. B. 113: 6782-91. PMID 19206510 DOI: 10.1021/Jp809782Z |
0.708 |
|
2009 |
Voelz VA, Shell MS, Dill KA. Predicting peptide structures in native proteins from physical simulations of fragments. Plos Computational Biology. 5: e1000281. PMID 19197352 DOI: 10.1371/Journal.Pcbi.1000281 |
0.686 |
|
2009 |
Shell MS, Ozkan SB, Voelz V, Wu GA, Dill KA. Blind test of physics-based prediction of protein structures. Biophysical Journal. 96: 917-24. PMID 19186130 DOI: 10.1016/J.Bpj.2008.11.009 |
0.793 |
|
2009 |
Ghosh K, Dill KA. Theory for protein folding cooperativity: helix bundles. Journal of the American Chemical Society. 131: 2306-12. PMID 19170581 DOI: 10.1021/Ja808136X |
0.411 |
|
2008 |
Urbi? T, Urbi? T, Avbelj F, Dill KA. Molecular Simulations Find Stable Structures in Fragments of Protein G. Acta Chimica Slovenica. 2008: 385-395. PMID 20448839 |
0.315 |
|
2008 |
Wu GA, Coutsias EA, Dill KA. Iterative assembly of helical proteins by optimal hydrophobic packing. Structure (London, England : 1993). 16: 1257-66. PMID 18682227 DOI: 10.1016/J.Str.2008.04.019 |
0.698 |
|
2008 |
Lee BC, Chu TK, Dill KA, Zuckermann RN. Biomimetic nanostructures: creating a high-affinity zinc-binding site in a folded nonbiological polymer. Journal of the American Chemical Society. 130: 8847-55. PMID 18597438 DOI: 10.1021/Ja802125X |
0.678 |
|
2008 |
Dill KA, Ozkan SB, Shell MS, Weikl TR. The protein folding problem. Annual Review of Biophysics. 37: 289-316. PMID 18573083 DOI: 10.1063/1.881371 |
0.684 |
|
2008 |
Stock G, Ghosh K, Dill KA. Maximum Caliber: a variational approach applied to two-state dynamics. The Journal of Chemical Physics. 128: 194102. PMID 18500851 DOI: 10.1063/1.2918345 |
0.318 |
|
2008 |
Shell MS, Ritterson R, Dill KA. A test on peptide stability of AMBER force fields with implicit solvation. The Journal of Physical Chemistry. B. 112: 6878-86. PMID 18471007 DOI: 10.1021/Jp800282X |
0.402 |
|
2008 |
Mobley DL, Baker JR, Barber AE, Fennell CJ, Dill KA. Charge asymmetries in hydration of polar solutes. The Journal of Physical Chemistry. B. 112: 2405-14. PMID 18251538 DOI: 10.1021/Jp709958F |
0.77 |
|
2008 |
Mobley DL, Dill KA, Chodera JD. Treating entropy and conformational changes in implicit solvent simulations of small molecules. The Journal of Physical Chemistry. B. 112: 938-46. PMID 18171044 DOI: 10.1021/Jp0764384 |
0.741 |
|
2007 |
Chodera JD, Swope WC, Pitera JW, Seok C, Dill KA. Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations. Journal of Chemical Theory and Computation. 3: 26-41. PMID 26627148 DOI: 10.1021/Ct0502864 |
0.72 |
|
2007 |
Mobley DL, Chodera JD, Dill KA. The Confine-and-Release Method: Obtaining Correct Binding Free Energies in the Presence of Protein Conformational Change. Journal of Chemical Theory and Computation. 3: 1231-1235. PMID 18843379 DOI: 10.1021/Ct700032N |
0.73 |
|
2007 |
Urbic T, Vlachy V, Kalyuzhnyi YV, Dill KA. An improved thermodynamic perturbation theory for Mercedes-Benz water. The Journal of Chemical Physics. 127: 174511. PMID 17994831 DOI: 10.1063/1.2784124 |
0.336 |
|
2007 |
Urbic T, Vlachy V, Kalyuzhnyi YV, Dill KA. Theory for the solvation of nonpolar solutes in water. The Journal of Chemical Physics. 127: 174505. PMID 17994825 DOI: 10.1063/1.2779329 |
0.331 |
|
2007 |
Ghosh K, Ozkan SB, Dill KA. The ultimate speed limit to protein folding is conformational searching. Journal of the American Chemical Society. 129: 11920-7. PMID 17824609 DOI: 10.1021/Ja066785B |
0.695 |
|
2007 |
Ozkan SB, Wu GA, Chodera JD, Dill KA. Protein folding by zipping and assembly. Proceedings of the National Academy of Sciences of the United States of America. 104: 11987-92. PMID 17620603 DOI: 10.1073/Pnas.0703700104 |
0.779 |
|
2007 |
Mobley DL, Graves AP, Chodera JD, McReynolds AC, Shoichet BK, Dill KA. Predicting absolute ligand binding free energies to a simple model site. Journal of Molecular Biology. 371: 1118-34. PMID 17599350 DOI: 10.1016/J.Jmb.2007.06.002 |
0.774 |
|
2007 |
Dill KA, Ozkan SB, Weikl TR, Chodera JD, Voelz VA. The protein folding problem: when will it be solved? Current Opinion in Structural Biology. 17: 342-6. PMID 17572080 DOI: 10.1016/J.Sbi.2007.06.001 |
0.801 |
|
2007 |
Bradford JA, Dill KA. Stochastic innovation as a mechanism by which catalysts might self-assemble into chemical reaction networks. Proceedings of the National Academy of Sciences of the United States of America. 104: 10098-103. PMID 17548812 DOI: 10.1073/Pnas.0703522104 |
0.717 |
|
2007 |
Chodera JD, Singhal N, Pande VS, Dill KA, Swope WC. Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics. The Journal of Chemical Physics. 126: 155101. PMID 17461665 DOI: 10.1063/1.2714538 |
0.689 |
|
2007 |
Lucas A, Huang L, Joshi A, Dill KA. Statistical mechanics of helix bundles using a dynamic programming approach. Journal of the American Chemical Society. 129: 4272-81. PMID 17362002 DOI: 10.1021/Ja067153S |
0.41 |
|
2007 |
Mobley DL, Dumont E, Chodera JD, Dill KA. Comparison of charge models for fixed-charge force fields: small-molecule hydration free energies in explicit solvent. The Journal of Physical Chemistry. B. 111: 2242-54. PMID 17291029 DOI: 10.1021/Jp0667442 |
0.723 |
|
2007 |
Voelz VA, Dill KA. Exploring zipping and assembly as a protein folding principle. Proteins. 66: 877-88. PMID 17154424 DOI: 10.1002/Prot.21234 |
0.657 |
|
2007 |
Weikl TR, Dill KA. Transition-states in protein folding kinetics: the structural interpretation of Phi values. Journal of Molecular Biology. 365: 1578-86. PMID 17141267 DOI: 10.1016/J.Jmb.2006.10.082 |
0.365 |
|
2007 |
Hockenmaier J, Joshi AK, Dill KA. Routes are trees: the parsing perspective on protein folding. Proteins. 66: 1-15. PMID 17063473 DOI: 10.1002/Prot.21195 |
0.381 |
|
2007 |
Chodera JD, Swope WC, Pitera JW, Seok C, Dill KA. Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations Journal of Chemical Theory and Computation. 3: 26-41. DOI: 10.1021/ct0502864 |
0.505 |
|
2007 |
Dill KA, Lucas A, Hockenmaier J, Huang L, Chiang D, Joshi AK. Computational linguistics: A new tool for exploring biopolymer structures and statistical mechanics Polymer. 48: 4289-4300. DOI: 10.1016/J.Polymer.2007.05.018 |
0.38 |
|
2006 |
Mobley DL, Chodera JD, Dill KA. On the use of orientational restraints and symmetry corrections in alchemical free energy calculations. The Journal of Chemical Physics. 125: 084902. PMID 16965052 DOI: 10.1063/1.2221683 |
0.724 |
|
2006 |
Ho BK, Dill KA. Folding very short peptides using molecular dynamics. Plos Computational Biology. 2: e27. PMID 16617376 DOI: 10.1371/Journal.Pcbi.0020027 |
0.366 |
|
2006 |
Urbic T, Vlachy V, Dill KA. Confined water: a Mercedes-Benz model study. The Journal of Physical Chemistry. B. 110: 4963-70. PMID 16526737 DOI: 10.1021/Jp055543F |
0.323 |
|
2006 |
Chiang D, Joshi AK, Dill KA. A grammatical theory for the conformational changes of simple helix bundles. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 21-42. PMID 16472020 DOI: 10.1089/Cmb.2006.13.21 |
0.359 |
|
2006 |
Ho BK, Dill KA. Correction: Folding Very Short Peptides Using Molecular Dynamics Plos Computational Biology. 2: e60. DOI: 10.1371/Journal.Pcbi.0020060 |
0.321 |
|
2006 |
Schlick T, Dill K. Special Section On Multiscale Modeling In Biology Multiscale Modeling & Simulation. 5: 1174-1174. DOI: 10.1137/Mmsubt000005000004001174000001 |
0.32 |
|
2006 |
Chodera JD, Swope WC, Pitera JW, Dill KA. Long-time protein folding dynamics from short-time molecular dynamics simulations Multiscale Modeling and Simulation. 5: 1214-1226. DOI: 10.1137/06065146X |
0.604 |
|
2006 |
Coutsias EA, Seok C, Wester MJ, Dill KA. Resultants and loop closure International Journal of Quantum Chemistry. 106: 176-189. DOI: 10.1002/Qua.20751 |
0.654 |
|
2005 |
Xu H, Dill KA. Water's hydrogen bonds in the hydrophobic effect: a simple model. The Journal of Physical Chemistry. B. 109: 23611-7. PMID 16375338 DOI: 10.1021/Jp0526750 |
0.364 |
|
2005 |
Coutsias EA, Seok C, Dill KA. Rotational superposition and least squares: the SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller. Journal of Computational Chemistry. 26: 1663-5. PMID 16175579 DOI: 10.1002/Jcc.20316 |
0.731 |
|
2005 |
Lee BC, Zuckermann RN, Dill KA. Folding a nonbiological polymer into a compact multihelical structure. Journal of the American Chemical Society. 127: 10999-1009. PMID 16076207 DOI: 10.1021/Ja0514904 |
0.709 |
|
2005 |
Merlo C, Dill KA, Weikl TR. Phi values in protein-folding kinetics have energetic and structural components. Proceedings of the National Academy of Sciences of the United States of America. 102: 10171-5. PMID 16009941 DOI: 10.1073/Pnas.0504171102 |
0.352 |
|
2005 |
Dill KA, Truskett TM, Vlachy V, Hribar-Lee B. Modeling water, the hydrophobic effect, and ion solvation. Annual Review of Biophysics and Biomolecular Structure. 34: 173-99. PMID 15869376 DOI: 10.1146/Annurev.Biophys.34.040204.144517 |
0.68 |
|
2005 |
Ho BK, Coutsias EA, Seok C, Dill KA. The flexibility in the proline ring couples to the protein backbone. Protein Science : a Publication of the Protein Society. 14: 1011-8. PMID 15772308 DOI: 10.1110/Ps.041156905 |
0.747 |
|
2005 |
Jaswal SS, Truhlar SM, Dill KA, Agard DA. Comprehensive analysis of protein folding activation thermodynamics reveals a universal behavior violated by kinetically stable proteases. Journal of Molecular Biology. 347: 355-66. PMID 15740746 DOI: 10.1016/J.Jmb.2005.01.032 |
0.323 |
|
2004 |
Coutsias EA, Seok C, Dill KA. Using quaternions to calculate RMSD. Journal of Computational Chemistry. 25: 1849-57. PMID 15376254 DOI: 10.1002/Jcc.20110 |
0.756 |
|
2004 |
Horn T, Lee BC, Dill KA, Zuckermann RN. Incorporation of chemoselective functionalities into peptoids via solid-phase submonomer synthesis. Bioconjugate Chemistry. 15: 428-35. PMID 15025542 DOI: 10.1021/Bc0341831 |
0.648 |
|
2004 |
Weikl TR, Palassini M, Dill KA. Cooperativity in two-state protein folding kinetics. Protein Science : a Publication of the Protein Society. 13: 822-9. PMID 14978313 DOI: 10.1110/Ps.03403604 |
0.4 |
|
2004 |
Coutsias EA, Seok C, Jacobson MP, Dill KA. A kinematic view of loop closure. Journal of Computational Chemistry. 25: 510-28. PMID 14735570 DOI: 10.1002/Jcc.10416 |
0.761 |
|
2004 |
BŁAŻEWICZ J, DILL K, ŁUKASIAK P, MIŁOSTAN M. A TABU SEARCH STRATEGY FOR FINDING LOW ENERGY STRUCTURES OF PROTEINS IN HP-MODEL* Computational Methods in Science and Technology. 10: 7-19. DOI: 10.12921/Cmst.2004.10.01.07-19 |
0.371 |
|
2004 |
Urbic T, Vlachy V, Pizio O, Dill KA. Water-like fluid in the presence of Lennard-Jones obstacles: Predictions of an associative replica Ornstein-Zernike theory Journal of Molecular Liquids. 112: 71-80. DOI: 10.1016/J.Molliq.2003.12.001 |
0.348 |
|
2004 |
Vlachy V, Hribar-Lee B, Kalyuzhnyi YV, Dill KA. Short-range interactions: From simple ions to polyelectrolyte solutions Current Opinion in Colloid and Interface Science. 9: 128-132. DOI: 10.1016/J.Cocis.2004.05.017 |
0.344 |
|
2003 |
Wu CW, Kirshenbaum K, Sanborn TJ, Patch JA, Huang K, Dill KA, Zuckermann RN, Barron AE. Structural and spectroscopic studies of peptoid oligomers with alpha-chiral aliphatic side chains. Journal of the American Chemical Society. 125: 13525-30. PMID 14583049 DOI: 10.1021/Ja037540R |
0.584 |
|
2003 |
Schonbrun J, Dill KA. Fast protein folding kinetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 12678-82. PMID 14569019 DOI: 10.1073/Pnas.1735417100 |
0.805 |
|
2003 |
Truskett TM, Dill KA. A simple analytical model of water. Biophysical Chemistry. 105: 449-59. PMID 14499910 DOI: 10.1016/S0301-4622(03)00107-8 |
0.544 |
|
2003 |
Weikl TR, Dill KA. Folding kinetics of two-state proteins: effect of circularization, permutation, and crosslinks. Journal of Molecular Biology. 332: 953-63. PMID 12972264 DOI: 10.1016/S0022-2836(03)00884-2 |
0.308 |
|
2003 |
Amato NM, Dill KA, Song G. Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 239-55. PMID 12935327 DOI: 10.1089/10665270360688002 |
0.364 |
|
2003 |
Weikl TR, Dill KA. Folding rates and low-entropy-loss routes of two-state proteins. Journal of Molecular Biology. 329: 585-98. PMID 12767836 DOI: 10.1016/S0022-2836(03)00436-4 |
0.394 |
|
2003 |
Ozkan SB, Dill KA, Bahar I. Computing the transition state populations in simple protein models. Biopolymers. 68: 35-46. PMID 12579578 DOI: 10.1002/Bip.10280 |
0.684 |
|
2003 |
Seok C, Rosen JB, Chodera JD, Dill KA. MOPED: method for optimizing physical energy parameters using decoys. Journal of Computational Chemistry. 24: 89-97. PMID 12483678 DOI: 10.1002/Jcc.10124 |
0.728 |
|
2003 |
Urbič T, Vlachy V, Kalyuzhnyi YV, Dill KA. Orientation-dependent integral equation theory for a two-dimensional model of water Journal of Chemical Physics. 118: 5516-5525. DOI: 10.1063/1.1556754 |
0.339 |
|
2002 |
Southall NT, Dill KA. Potential of mean force between two hydrophobic solutes in water. Biophysical Chemistry. 101: 295-307. PMID 12488009 DOI: 10.1016/S0301-4622(02)00167-9 |
0.591 |
|
2002 |
Hribar B, Southall NT, Vlachy V, Dill KA. How ions affect the structure of water. Journal of the American Chemical Society. 124: 12302-11. PMID 12371874 DOI: 10.1021/Ja026014H |
0.575 |
|
2002 |
Ozkan SB, Dill KA, Bahar I. Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model. Protein Science : a Publication of the Protein Society. 11: 1958-70. PMID 12142450 DOI: 10.1110/Ps.0207102 |
0.698 |
|
2002 |
Ball KD, Erman B, Dill KA. The elastic net algorithm and protein structure prediction. Journal of Computational Chemistry. 23: 77-83. PMID 11913391 DOI: 10.1002/Jcc.1158 |
0.805 |
|
2002 |
Truskett TM, Dill KA. Predicting water's phase diagram and liquid-state anomalies Journal of Chemical Physics. 117: 5101-5104. DOI: 10.1063/1.1505438 |
0.537 |
|
2002 |
Urbi T, Vlachy V, Kalyuzhnyi YV, Southall NT, Dill KA. A two-dimensional model of water: Solvation of nonpolar solutes Journal of Chemical Physics. 116: 723-729. DOI: 10.1063/1.1427307 |
0.589 |
|
2002 |
Truskett TM, Dill KA. A simple statistical mechanical model of water Journal of Physical Chemistry B. 106: 11829-11842. DOI: 10.1021/Jp021418H |
0.568 |
|
2002 |
Southall NT, Dill KA, Haymet ADJ. A view of the hydrophobic effect Journal of Physical Chemistry B. 106: 521-533. DOI: 10.1021/Jp015514E |
0.584 |
|
2002 |
Erkip A, Erman B, Seok C, Dill K. Parameter optimization for the Gaussian model of protein folding Polymer. 43: 495-501. DOI: 10.1016/S0032-3861(01)00421-9 |
0.587 |
|
2001 |
Zhou HX, Dill KA. Stabilization of proteins in confined spaces. Biochemistry. 40: 11289-93. PMID 11560476 DOI: 10.1021/Bi0155504 |
0.354 |
|
2001 |
Ozkan SB, Bahar I, Dill KA. Transition states and the meaning of Phi-values in protein folding kinetics. Nature Structural Biology. 8: 765-9. PMID 11524678 DOI: 10.1038/Nsb0901-765 |
0.668 |
|
2001 |
Liang J, Dill KA. Are proteins well-packed? Biophysical Journal. 81: 751-66. PMID 11463623 DOI: 10.1016/S0006-3495(01)75739-6 |
0.336 |
|
2001 |
Silverstein KAT, Dill KA, Haymet ADJ. Hydrophobicity in a simple model of water: Entropy penalty as a sum of competing terms via full, angular expansion Journal of Chemical Physics. 114: 6303-6314. DOI: 10.1063/1.1355997 |
0.333 |
|
2001 |
Southall NT, Dill KA. Response to “Comment on ‘The Mechanism of Hydrophobic Solvation Depends on Solute Radius',J.Phys. Chem. B2000,104, 1326” The Journal of Physical Chemistry B. 105: 2082-2083. DOI: 10.1021/Jp010003D |
0.539 |
|
2001 |
Tøstesen E, Chen ASJ, Dill KA. RNA folding transitions and cooperativity Journal of Physical Chemistry B. 105: 1618-1630. DOI: 10.1021/Jp002877Q |
0.354 |
|
2000 |
Chen SJ, Dill KA. RNA folding energy landscapes. Proceedings of the National Academy of Sciences of the United States of America. 97: 646-51. PMID 10639133 DOI: 10.1073/Pnas.97.2.646 |
0.36 |
|
2000 |
Urbič T, Vlachy V, Kalyuzhnyi YV, Southall NT, Dill KA. A two-dimensional model of water: Theory and computer simulations Journal of Chemical Physics. 112: 2843-2848. DOI: 10.1063/1.480928 |
0.591 |
|
2000 |
Erman B, Dill K. Gaussian model of protein folding The Journal of Chemical Physics. 112: 1050-1056. DOI: 10.1063/1.480629 |
0.612 |
|
2000 |
Wang T, Miller J, Wingreen NS, Tang C, Dill KA. Symmetry and designability for lattice protein models Journal of Chemical Physics. 113: 8329-8336. DOI: 10.1063/1.1315324 |
0.35 |
|
2000 |
Southall NT, Dill KA. The mechanism of hydrophobic solvation depends on solute radius Journal of Physical Chemistry B. 104: 1326-1331. DOI: 10.1021/Jp992860B |
0.589 |
|
2000 |
Brem R, Chan HS, Dill KA. Extracting microscopic energies from oil-phase solvation experiments Journal of Physical Chemistry B. 104: 7471-7482. DOI: 10.1021/Jp0003297 |
0.722 |
|
2000 |
Silverstein KAT, Haymet ADJ, Dill KA. The strength of hydrogen bonds in liquid water and around nonpolar solutes Journal of the American Chemical Society. 122: 8037-8041. DOI: 10.1021/Ja000459T |
0.301 |
|
1999 |
Young M, Kirshenbaum K, Dill KA, Highsmith S. Predicting conformational switches in proteins. Protein Science : a Publication of the Protein Society. 8: 1752-64. PMID 10493576 DOI: 10.1110/Ps.8.9.1752 |
0.362 |
|
1999 |
Kirshenbaum K, Zuckermann RN, Dill KA. Designing polymers that mimic biomolecules. Current Opinion in Structural Biology. 9: 530-5. PMID 10449369 DOI: 10.1016/S0959-440X(99)80075-X |
0.584 |
|
1999 |
Dill KA. Polymer principles and protein folding. Protein Science : a Publication of the Protein Society. 8: 1166-80. PMID 10386867 DOI: 10.1110/Ps.8.6.1166 |
0.347 |
|
1999 |
Brem R, Dill KA. The effect of multiple binding modes on empirical modeling of ligand docking to proteins. Protein Science : a Publication of the Protein Society. 8: 1134-43. PMID 10338024 DOI: 10.1110/Ps.8.5.1134 |
0.563 |
|
1999 |
Ishikawa K, Yue K, Dill KA. Predicting the structures of 18 peptides using Geocore. Protein Science : a Publication of the Protein Society. 8: 716-21. PMID 10211817 DOI: 10.1110/Ps.8.4.716 |
0.351 |
|
1999 |
Silverstein KAT, Haymet ADJ, Dill KA. Molecular model of hydrophobic solvation Journal of Chemical Physics. 111: 8000-8009. DOI: 10.1063/1.480133 |
0.348 |
|
1999 |
Foreman KW, Phillips AT, Rosen JB, Dill KA. Comparing search strategies for finding global optima on energy landscapes Journal of Computational Chemistry. 20: 1527-1532. DOI: 10.1002/(Sici)1096-987X(19991115)20:14<1527::Aid-Jcc5>3.0.Co;2-W |
0.331 |
|
1998 |
Armand P, Kirshenbaum K, Goldsmith RA, Farr-Jones S, Barron AE, Truong KT, Dill KA, Mierke DF, Cohen FE, Zuckermann RN, Bradley EK. NMR determination of the major solution conformation of a peptoid pentamer with chiral side chains. Proceedings of the National Academy of Sciences of the United States of America. 95: 4309-14. PMID 9539733 DOI: 10.1073/Pnas.95.8.4309 |
0.578 |
|
1998 |
Kirshenbaum K, Barron AE, Goldsmith RA, Armand P, Bradley EK, Truong KT, Dill KA, Cohen FE, Zuckermann RN. Sequence-specific polypeptoids: a diverse family of heteropolymers with stable secondary structure. Proceedings of the National Academy of Sciences of the United States of America. 95: 4303-8. PMID 9539732 DOI: 10.1073/Pnas.95.8.4303 |
0.574 |
|
1998 |
Chan HS, Dill KA. Protein folding in the landscape perspective: chevron plots and non-Arrhenius kinetics. Proteins. 30: 2-33. PMID 9443337 DOI: 10.1002/(Sici)1097-0134(19980101)30:1<2::Aid-Prot2>3.0.Co;2-R |
0.381 |
|
1998 |
Chen SJ, Dill KA. Theory for the conformational changes of double-stranded chain molecules Journal of Chemical Physics. 109: 4602-4616. DOI: 10.1063/1.477065 |
0.36 |
|
1998 |
DeVido DR, Dorsey JG, Chan HS, Dill KA. Oil/water partitioning has a different thermodynamic signature when the oil solvent chains are aligned than when they are amorphous Journal of Physical Chemistry B. 102: 7272-7279. DOI: 10.1021/Jp9807165 |
0.558 |
|
1998 |
Silverstein KAT, Haymet ADJ, Dill KA. A simple model of water and the hydrophobic effect Journal of the American Chemical Society. 120: 3166-3175. DOI: 10.1021/Ja973029K |
0.365 |
|
1998 |
Silverstein KAT, Dill KA, Haymet ADJ. Hydrophobicity in a simple model of water: Solvation and hydrogen bond energies Fluid Phase Equilibria. 150: 83-90. DOI: 10.1016/S0378-3812(98)00278-7 |
0.34 |
|
1997 |
Armand P, Kirshenbaum K, Falicov A, Dunbrack RL, Dill KA, Zuckermann RN, Cohen FE. Chiral N-substituted glycines can form stable helical conformations. Folding & Design. 2: 369-75. PMID 9427011 DOI: 10.1016/S1359-0278(97)00051-5 |
0.584 |
|
1997 |
Miller DW, Dill KA. Ligand binding to proteins: the binding landscape model. Protein Science : a Publication of the Protein Society. 6: 2166-79. PMID 9336839 DOI: 10.1002/Pro.5560061011 |
0.314 |
|
1997 |
Dill KA, Phillips AT, Rosen JB. Protein structure and energy landscape dependence on sequence using a continuous energy function. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 227-39. PMID 9278057 DOI: 10.1089/Cmb.1997.4.227 |
0.397 |
|
1997 |
Chan HS, Dill KA. Solvation: How to obtain microscopic energies from partitioning and solvation experiments Annual Review of Biophysics and Biomolecular Structure. 26: 425-459. PMID 9241426 DOI: 10.1146/Annurev.Biophys.26.1.425 |
0.383 |
|
1997 |
Dill KA. Additivity principles in biochemistry Journal of Biological Chemistry. 272: 701-704. PMID 8995351 DOI: 10.1074/Jbc.272.2.701 |
0.365 |
|
1997 |
Dill KA, Chan HS. From levinthal to pathways to funnels Nature Structural Biology. 4: 10-19. PMID 8989315 DOI: 10.1038/Nsb0197-10 |
0.624 |
|
1997 |
Beutler TC, Dill KA. A fast conformational search strategy for finding low energy structures of model proteins. Protein Science : a Publication of the Protein Society. 5: 2037-43. PMID 8897604 DOI: 10.1002/Pro.5560051010 |
0.412 |
|
1997 |
Stigter D, Dill KA. Binding of ionic ligands to polyelectrolytes. Biophysical Journal. 71: 2064-74. PMID 8889181 DOI: 10.1016/S0006-3495(96)79405-5 |
0.304 |
|
1996 |
Thomas PD, Dill KA. An iterative method for extracting energy-like quantities from protein structures Proceedings of the National Academy of Sciences of the United States of America. 93: 11628-11633. PMID 8876187 DOI: 10.1073/Pnas.93.21.11628 |
0.38 |
|
1996 |
Chan HS, Dill KA. A simple model of chaperonin-mediated protein folding. Proteins. 24: 345-51. PMID 8778781 DOI: 10.1002/(Sici)1097-0134(199603)24:3<345::Aid-Prot7>3.0.Co;2-F |
0.386 |
|
1996 |
Chan HS, Dill KA. Comparing folding codes for proteins and polymers. Proteins. 24: 335-44. PMID 8778780 DOI: 10.1002/(Sici)1097-0134(199603)24:3<335::Aid-Prot6>3.0.Co;2-F |
0.363 |
|
1996 |
Yue K, Dill KA. Folding proteins with a simple energy function and extensive conformational searching Protein Science. 5: 254-261. PMID 8745403 DOI: 10.1002/Pro.5560050209 |
0.425 |
|
1996 |
Sun S, Thomas PD, Dill KA. A simple protein folding algorithm using a binary code and secondary structure constraints. Protein Engineering. 8: 769-78. PMID 8637846 DOI: 10.1093/Protein/8.8.769 |
0.383 |
|
1996 |
Thomas PD, Dill KA. Statistical potentials extracted from protein structures: how accurate are they? Journal of Molecular Biology. 257: 457-69. PMID 8609636 DOI: 10.1006/Jmbi.1996.0175 |
0.4 |
|
1996 |
Chen SJ, Dill KA. Symmetries in proteins: A knot theory approach Journal of Chemical Physics. 104: 5964-5973. DOI: 10.1063/1.471328 |
0.356 |
|
1996 |
Haymet ADJ, Silverstein KAT, Dill KA. Hydrophobicity reinterpreted as 'minimisation of the entropy penalty of solvation' Faraday Discussions. 103: 117-124. DOI: 10.1039/Fd9960300117 |
0.315 |
|
1996 |
Wallace DG, Dill KA. Treating sequence dependence of protein stability in a mean-field model Biopolymers. 39: 115-127. DOI: 10.1002/(Sici)1097-0282(199607)39:1<115::Aid-Bip12>3.0.Co;2-F |
0.315 |
|
1995 |
Sun S, Brem R, Chan HS, Dill KA. Designing amino acid sequences to fold with good hydrophobic cores. Protein Engineering. 8: 1205-13. PMID 8869633 DOI: 10.1093/Protein/8.12.1205 |
0.567 |
|
1995 |
Miller DW, Dill KA. A statistical mechanical model for hydrogen exchange in globular proteins. Protein Science : a Publication of the Protein Society. 4: 1860-73. PMID 8528084 DOI: 10.1002/Pro.5560040921 |
0.392 |
|
1995 |
Yue K, Fiebig KM, Thomas PD, Chan HS, Shakhnovich EI, Dill KA. A test of lattice protein folding algorithms. Proceedings of the National Academy of Sciences of the United States of America. 92: 325-9. PMID 7816842 DOI: 10.1073/Pnas.92.1.325 |
0.389 |
|
1995 |
Yue K, Dill KA. Forces of tertiary structural organization in globular proteins Proceedings of the National Academy of Sciences of the United States of America. 92: 146-150. PMID 7816806 DOI: 10.1073/Pnas.92.1.146 |
0.385 |
|
1995 |
Dill KA, Stigter D. Modeling protein stability as heteropolymer collapse. Advances in Protein Chemistry. 46: 59-104. PMID 7771323 DOI: 10.1016/S0065-3233(08)60332-0 |
0.395 |
|
1995 |
Chan HS, Bromberg S, Dill KA. Models of cooperativity in protein folding. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 348: 61-70. PMID 7770488 DOI: 10.1098/Rstb.1995.0046 |
0.408 |
|
1995 |
Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS. Principles of protein folding--a perspective from simple exact models. Protein Science : a Publication of the Protein Society. 4: 561-602. PMID 7613459 DOI: 10.1002/Pro.5560040401 |
0.428 |
|
1995 |
Chen S, Dill KA. Statistical thermodynamics of double‐stranded polymer molecules The Journal of Chemical Physics. 103: 5802-5813. DOI: 10.1063/1.470461 |
0.362 |
|
1995 |
Krukowski AE, Chan HS, Dill KA. An exact lattice model of complex solutions: Chemical potentials depend on solute and solvent shape The Journal of Chemical Physics. 103: 10675-10688. DOI: 10.1063/1.469854 |
0.599 |
|
1995 |
Stigter D, Dill KA. Theory for Radii and Second Virial Coefficients. 1. Highly Charged Polyelectrolytes Macromolecules. 28: 5325-5337. DOI: 10.1021/Ma00119A024 |
0.316 |
|
1995 |
Dill KA, Chan HS, Yue K. The protein folding problem: Searching conformations of compact chain molecule Macromolecular Symposia. 98: 615-617. DOI: 10.1002/Masy.19950980152 |
0.631 |
|
1994 |
Thomas PD, Dill KA. Local and nonlocal interactions in globular proteins and mechanisms of alcohol denaturation. Protein Science : a Publication of the Protein Society. 2: 2050-65. PMID 8298455 DOI: 10.1002/Pro.5560021206 |
0.391 |
|
1994 |
Lattman EE, Fiebig KM, Dill KA. Modeling compact denatured states of proteins Biochemistry. 33: 6158-6166. PMID 8193129 DOI: 10.1021/Bi00186A015 |
0.348 |
|
1994 |
Yee DP, Chan HS, Havel TF, Dill KA. Does compactness induce secondary structure in proteins? A study of poly-alanine chains computed by distance geometry. Journal of Molecular Biology. 241: 557-73. PMID 8057379 DOI: 10.1006/Jmbi.1994.1531 |
0.641 |
|
1994 |
Bromberg S, Dill KA. Side-chain entropy and packing in proteins. Protein Science : a Publication of the Protein Society. 3: 997-1009. PMID 7920265 DOI: 10.1002/Pro.5560030702 |
0.345 |
|
1994 |
Chan HS, Dill KA. Solvation: Effects of molecular size and shape The Journal of Chemical Physics. 101: 7007-7026. DOI: 10.1063/1.468327 |
0.596 |
|
1994 |
Chan HS, Dill KA. Transition states and folding dynamics of proteins and heteropolymers The Journal of Chemical Physics. 100: 9238-9257. DOI: 10.1063/1.466677 |
0.633 |
|
1994 |
Minden HT, Chan HS, Dill KA. Might DNA Shape Tell Proteins How to Fold? Physics Today. 47: 124-125. DOI: 10.1063/1.2808425 |
0.566 |
|
1993 |
Yee DP, Dill KA. Families and the structural relatedness among globular proteins. Protein Science : a Publication of the Protein Society. 2: 884-99. PMID 8318894 DOI: 10.1002/Pro.5560020603 |
0.33 |
|
1993 |
Dill KA, Fiebig KM, Chan HS. Cooperativity in protein-folding kinetics. Proceedings of the National Academy of Sciences of the United States of America. 90: 1942-6. PMID 7680482 DOI: 10.1073/Pnas.90.5.1942 |
0.38 |
|
1993 |
Yue K, Dill KA. Sequence-structure relationships in proteins and copolymers Physical Review E. 48: 2267-2278. DOI: 10.1103/Physreve.48.2267 |
0.397 |
|
1993 |
Chan HS, Dill KA. Energy landscapes and the collapse dynamics of homopolymers The Journal of Chemical Physics. 99: 2116-2127. DOI: 10.1063/1.465277 |
0.647 |
|
1993 |
Baker D, Chan HS, Dill KA. Coordinate‐space formulation of polymer lattice cluster theory The Journal of Chemical Physics. 98: 9951-9962. DOI: 10.1063/1.464321 |
0.596 |
|
1993 |
Fiebig KM, Dill KA. Protein core assembly processes The Journal of Chemical Physics. 98: 3475-3487. DOI: 10.1063/1.464068 |
0.354 |
|
1993 |
Dill KA. Folding proteins: finding a needle in a haystack Current Opinion in Structural Biology. 3: 99-103. DOI: 10.1016/0959-440X(93)90208-3 |
0.426 |
|
1993 |
Stigter D, Dill KA. Theory for protein solubilities Fluid Phase Equilibria. 82: 237-249. DOI: 10.1016/0378-3812(93)87148-T |
0.366 |
|
1992 |
Alonso DO, Dill KA, Stigter D. The three states of globular proteins: acid denaturation. Biopolymers. 31: 1631-49. PMID 1814509 DOI: 10.1002/Bip.360311317 |
0.359 |
|
1992 |
Yue K, Dill KA. Inverse protein folding problem: Designing polymer sequences Proceedings of the National Academy of Sciences of the United States of America. 89: 4163-4167. PMID 1570343 DOI: 10.1073/Pnas.89.9.4163 |
0.372 |
|
1992 |
Shortle D, Hue Sun Chan, Dill KA. Modeling the effects of mutations on the denatured states of proteins Protein Science. 1: 201-215. PMID 1304903 DOI: 10.1002/Pro.5560010202 |
0.376 |
|
1992 |
Chan HS, Wattenbarger MR, Evans DF, Bloomfield VA, Dill KA. Erratum: Enhanced structure in polymers at interfaces [J. Chem. Phys. 94, 8542 (1991)] The Journal of Chemical Physics. 96: 3361-3361. DOI: 10.1063/1.462902 |
0.664 |
|
1992 |
Chan HS, Dill KA. Erratum: Intrachain loops in polymers: Effects of excluded volume [J. Chem. Phys. 90, 492 (1989)] The Journal of Chemical Physics. 96: 3361-3361. DOI: 10.1063/1.462900 |
0.54 |
|
1992 |
Miller R, Danko CA, Fasolka MJ, Balazs AC, Sun Chan H, Dill KA. Folding kinetics of proteins and copolymers The Journal of Chemical Physics. 96: 768-780. DOI: 10.1063/1.462462 |
0.42 |
|
1992 |
Fields GB, Alonso DOV, Stigter D, Dill KA. Theory for the aggregation of proteins and copolymers The Journal of Physical Chemistry. 96: 3974-3981. DOI: 10.1021/J100189A013 |
0.344 |
|
1991 |
Alonso DO, Dill KA. Solvent denaturation and stabilization of globular proteins. Biochemistry. 30: 5974-85. PMID 2043635 DOI: 10.1021/Bi00238A023 |
0.413 |
|
1991 |
Stigter D, Alonso DO, Dill KA. Protein stability: electrostatics and compact denatured states. Proceedings of the National Academy of Sciences of the United States of America. 88: 4176-80. PMID 2034662 DOI: 10.1073/Pnas.88.10.4176 |
0.318 |
|
1991 |
Dill KA, Shortle D. Denatured states of proteins. Annual Review of Biochemistry. 60: 795-825. PMID 1883209 DOI: 10.1146/Annurev.Bi.60.070191.004051 |
0.394 |
|
1991 |
Chan HS, Dill KA. ‘‘Sequence space soup’’ of proteins and copolymers The Journal of Chemical Physics. 95: 3775-3787. DOI: 10.1063/1.460828 |
0.64 |
|
1991 |
Chan HS, Wattenbarger MR, Evans DF, Bloomfield VA, Dill KA. Enhanced structure in polymers at interfaces The Journal of Chemical Physics. 94: 8542-8557. DOI: 10.1063/1.460088 |
0.684 |
|
1990 |
Chan HS, Dill KA. Origins of structure in globular proteins. Proceedings of the National Academy of Sciences of the United States of America. 87: 6388-92. PMID 2385597 DOI: 10.1073/Pnas.87.16.6388 |
0.385 |
|
1990 |
Stigter D, Dill KA. Charge effects on folded and unfolded proteins. Biochemistry. 29: 1262-71. PMID 2322561 DOI: 10.1021/Bi00457A023 |
0.401 |
|
1990 |
Lau KF, Dill KA. Theory for protein mutability and biogenesis. Proceedings of the National Academy of Sciences of the United States of America. 87: 638-42. PMID 2300551 DOI: 10.1073/Pnas.87.2.638 |
0.363 |
|
1990 |
Dill KA. Dominant forces in protein folding. Biochemistry. 29: 7133-55. PMID 2207096 DOI: 10.1021/Bi00483A001 |
0.304 |
|
1990 |
Wattenbarger MR, Chan HS, Evans DF, Dill KA. Surface‐induced enhancement of internal structure in polymers and proteins The Journal of Chemical Physics. 93: 8343-8351. DOI: 10.1063/1.459317 |
0.603 |
|
1990 |
Chan HS, Dill KA. The effects of internal constraints on the configurations of chain molecules The Journal of Chemical Physics. 92: 3118-3135. DOI: 10.1063/1.458605 |
0.619 |
|
1990 |
De Young LR, Dill KA. Partitioning of nonpolar solutes into bilayers and amorphous n-alkanes The Journal of Physical Chemistry. 94: 801-809. DOI: 10.1021/J100365A054 |
0.344 |
|
1989 |
Dill KA. The chain conformations in membranes and micelles. Advances in Colloid and Interface Science. 26: 99-110. PMID 3333135 DOI: 10.1016/0001-8686(86)80017-3 |
0.324 |
|
1989 |
Dill KA, Naghizadeh J, Marqusee JA. Chain molecules at high densities at interfaces. Annual Review of Physical Chemistry. 39: 425-61. PMID 3075466 DOI: 10.1146/Annurev.Pc.39.100188.002233 |
0.304 |
|
1989 |
Ying PT, Dorsey JG, Dill KA. Retention mechanisms of reversed-phase liquid chromatography: determination of solute-solvent interaction free energies. Analytical Chemistry. 61: 2540-6. PMID 2817406 DOI: 10.1021/Ac00197A017 |
0.317 |
|
1989 |
Dill KA, Alonso DOV, Hutchinson K. Thermal stabilities of globular proteins Biochemistry. 28: 5439-5449. PMID 2775715 DOI: 10.1021/Bi00439A019 |
0.372 |
|
1989 |
Chan HS, Dill KA. Intrachain loops in polymers: Effects of excluded volume The Journal of Chemical Physics. 90: 492-509. DOI: 10.1063/1.456500 |
0.592 |
|
1989 |
Lau KF, Dill KA. A lattice statistical mechanics model of the conformational and sequence spaces of proteins Macromolecules. 22: 3986-3997. DOI: 10.1021/Ma00200A030 |
0.386 |
|
1989 |
Stigter D, Dill KA. Free energy of electrical double layers: entropy of adsorbed ions and the binding polynomial The Journal of Physical Chemistry. 93: 6737-6743. DOI: 10.1021/J100355A033 |
0.328 |
|
1988 |
Dill KA, Stigter D. Lateral interactions among phosphatidylcholine and phosphatidylethanolamine head groups in phospholipid monolayers and bilayers. Biochemistry. 27: 3446-53. PMID 3390444 DOI: 10.1021/Bi00409A048 |
0.31 |
|
1986 |
Marqusee JA, Dill KA. Solute partitioning into chain molecule interphases: Monolayers, bilayer membranes, and micelles The Journal of Chemical Physics. 85: 434-444. DOI: 10.1063/1.451621 |
0.326 |
|
1986 |
Cantor RS, Dill KA. Theory for the equation of state of phospholipid monolayers Langmuir. 2: 331-337. DOI: 10.1021/La00069A015 |
0.628 |
|
1985 |
Dill KA. Theory for the folding and stability of globular proteins. Biochemistry. 24: 1501-9. PMID 3986190 DOI: 10.1021/Bi00327A032 |
0.382 |
|
1985 |
Cantor RS, Dill KA. Statistical thermodynamic theory for the melting of n-alkanes from their rotator phases Macromolecules. 18: 1875-1882. DOI: 10.1021/Ma00152A015 |
0.635 |
|
1984 |
Dill KA, Koppel DE, Cantor RS. Molecular conformations in surfactant micelles Nature. 309: 42-45. DOI: 10.1038/309042A0 |
0.696 |
|
1984 |
Flory PJ, Yoon DY, Dill KA. The interphase in lamellar semicrystalline polymers Macromolecules. 17: 862-868. DOI: 10.1021/Ma00134A055 |
0.563 |
|
1984 |
Cantor RS, Dill KA. Statistical thermodynamics of short-chain molecule interphases. 2. Configurational properties of amphiphilic aggregates Macromolecules. 17: 384-388. DOI: 10.1021/Ma00133A023 |
0.664 |
|
1984 |
Dill KA, Cantor RS. Statistical thermodynamics of short-chain molecule interphases. 1. Theory Macromolecules. 17: 380-384. DOI: 10.1021/Ma00133A022 |
0.656 |
|
1982 |
Dill KA. Configurations of the amphiphilic molecules in micelles The Journal of Physical Chemistry. 86: 1498-1500. DOI: 10.1021/J100206A006 |
0.33 |
|
1981 |
Dill KA, Flory PJ. Molecular organization in micelles and vesicles. Proceedings of the National Academy of Sciences of the United States of America. 78: 676-80. PMID 16592970 DOI: 10.1073/Pnas.78.2.676 |
0.432 |
|
1980 |
Dill KA, Flory PJ. Interphases of chain molecules: Monolayers and lipid bilayer membranes. Proceedings of the National Academy of Sciences of the United States of America. 77: 3115-9. PMID 16592834 DOI: 10.1073/Pnas.77.6.3115 |
0.428 |
|
1980 |
Troll M, Dill KA, Zimm BH. Dynamics of polymer solutions. 3. An instrument for stress relaxations on dilute solutions of large polymer molecules Macromolecules. 13: 436-438. DOI: 10.1021/Ma60074A043 |
0.554 |
|
1980 |
Dill KA, Zimm BH. Dynamics of polymer solutions. 2. The determination of molecular weight distribution by viscoelasticity Macromolecules. 13: 432-436. DOI: 10.1021/Ma60074A042 |
0.552 |
|
1980 |
Dill KA, Zimm BH. Dynamics of polymer solutions. 1. Theory for an instrument Macromolecules. 13: 426-432. DOI: 10.1021/Ma60074A041 |
0.549 |
|
1979 |
Dill KA, Zimm BH. A rhelogical separator for very large DNA molecules. Nucleic Acids Research. 7: 735-49. PMID 388346 DOI: 10.1093/Nar/7.3.735 |
0.499 |
|
Low-probability matches (unlikely to be authored by this person) |
2016 |
Dill K. Some Cell Behavior is Encoded in Proteome Physics Biophysical Journal. 110: 4a. DOI: 10.1016/J.Bpj.2015.11.064 |
0.3 |
|
2011 |
Schmit JD, Whitelam S, Dill K. Electrostatics and aggregation: how charge can turn a crystal into a gel. The Journal of Chemical Physics. 135: 085103. PMID 21895221 DOI: 10.1063/1.3626803 |
0.299 |
|
1992 |
Stigter D, Mingins J, Dill KA. Phospholipid interactions in model membrane systems. II. Theory. Biophysical Journal. 61: 1616-29. PMID 1617141 DOI: 10.1016/S0006-3495(92)81965-3 |
0.299 |
|
2011 |
Dill KA, Ghosh K, Schmit JD. Physical limits of cells and proteomes. Proceedings of the National Academy of Sciences of the United States of America. 108: 17876-82. PMID 22006304 DOI: 10.1073/Pnas.1114477108 |
0.299 |
|
2023 |
Parui S, Brini E, Dill KA. Computing Free Energies of Fold-Switching Proteins Using MELD x MD. Journal of Chemical Theory and Computation. 19: 6839-6847. PMID 37725050 DOI: 10.1021/acs.jctc.3c00679 |
0.299 |
|
1980 |
Dill KA. Concentration Dependence of the Viscosity and Viscoelasticity of Polymer Solutions: Application of the Theory of Muthukumar and Freed Macromolecules. 13: 620-622. DOI: 10.1021/Ma60075A026 |
0.298 |
|
2014 |
Maitra A, Dill K. Bacterial Growth and Division: Theory Biophysical Journal. 106: 378a-379a. DOI: 10.1016/J.Bpj.2013.11.2142 |
0.298 |
|
2014 |
Graff AM, Hazoglou M, Dill KA. Thermodynamic Stability of an Aging Proteome Biophysical Journal. 106: 668a. DOI: 10.1016/J.Bpj.2013.11.3697 |
0.295 |
|
2012 |
Dill KA, Ghosh K, Schmit J. Reply to Vazquez: Optimal density is robust to variations in calculation Proceedings of the National Academy of Sciences of the United States of America. 109: E534. DOI: 10.1073/Pnas.1121337109 |
0.292 |
|
2010 |
Schmit JD, Dill KA. The stabilities of protein crystals. The Journal of Physical Chemistry. B. 114: 4020-7. PMID 20199035 DOI: 10.1021/Jp9107188 |
0.292 |
|
2010 |
Kortkhonjia E, Brandman R, Chorny I, Kissman J, Patapoff T, Kabakoff B, Dill K, Swartz T. Solution Dynamics of Monoclonal Antibodies: Experimental and Computational Approach Biophysical Journal. 98: 443a. DOI: 10.1016/J.Bpj.2009.12.2406 |
0.29 |
|
2006 |
Ghosh K, Dill KA, Inamdar MM, Seitaridou E, Phillips R. Teaching the principles of statistical dynamics. American Journal of Physics. 74: 123-133. PMID 23585693 DOI: 10.1119/1.2142789 |
0.289 |
|
2010 |
Schmit JD, Dill K. Theory of the Solubility of Protein Crystals Biophysical Journal. 98: 60a. DOI: 10.1016/J.Bpj.2009.12.342 |
0.288 |
|
2012 |
Schmit JD, Dill K. Growth rates of protein crystals. Journal of the American Chemical Society. 134: 3934-7. PMID 22339624 DOI: 10.1021/Ja207336R |
0.288 |
|
1993 |
Stigter D, Dill KA. Theory for second virial coefficients of short DNA The Journal of Physical Chemistry. 97: 12995-12997. DOI: 10.1021/J100151A057 |
0.286 |
|
2005 |
Chorny I, Dill KA, Jacobson MP. Surfaces affect ion pairing. The Journal of Physical Chemistry. B. 109: 24056-60. PMID 16375397 DOI: 10.1021/Jp055043M |
0.285 |
|
2019 |
Khramushin A, Marcu O, Alam N, Shimony O, Padhorny D, Brini E, Dill K, Vajda S, Kozakov D, Schueler-Furman O. Modeling beta sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI Rounds 38-45. Proteins. PMID 31891416 DOI: 10.1002/Prot.25871 |
0.281 |
|
2015 |
Dixit PD, Jain A, Stock G, Dill KA. Inferring Transition Rates of Networks from Populations in Continuous-Time Markov Processes. Journal of Chemical Theory and Computation. 11: 5464-72. PMID 26574334 DOI: 10.1021/Acs.Jctc.5B00537 |
0.28 |
|
2019 |
Wagoner JA, Dill KA. Opposing pressures of speed and efficiency guide the evolution of molecular machines. Molecular Biology and Evolution. PMID 31432071 DOI: 10.1093/Molbev/Msz190 |
0.278 |
|
2015 |
Holm C, Gompper G, Dill KA. Preface: Special Topic on Coarse Graining of Macromolecules, Biopolymers, and Membranes. The Journal of Chemical Physics. 143: 242901. PMID 26723585 DOI: 10.1063/1.4938430 |
0.278 |
|
1991 |
Naghizadeh J, Dill KA. Statistical mechanics of chain molecules at interfaces Macromolecules. 24: 1768-1778. DOI: 10.1021/Ma00008A013 |
0.276 |
|
2021 |
Yadav AK, Bandyopadhyay P, Urbic T, Dill KA. Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water. The Journal of Physical Chemistry. B. PMID 33539097 DOI: 10.1021/acs.jpcb.0c10329 |
0.276 |
|
2013 |
Peterson J, Dixit PD, Dill KA. A maximum entropy framework for nonexponential distributions. Proceedings of the National Academy of Sciences of the United States of America. 110: 20380-5. PMID 24297895 DOI: 10.1073/Pnas.1320578110 |
0.268 |
|
2017 |
Szenk M, Dill KA, de Graff AMR. Why Do Fast-Growing Bacteria Enter Overflow Metabolism? Testing the Membrane Real Estate Hypothesis. Cell Systems. PMID 28755958 DOI: 10.1016/J.Cels.2017.06.005 |
0.268 |
|
2024 |
Dignon GL, Dill KA. Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of Chemical Theory and Computation. PMID 38294777 DOI: 10.1021/acs.jctc.3c01197 |
0.267 |
|
2023 |
Dignon GL, Dill KA. A computational procedure for predicting excipient effects on protein-protein affinities. Biorxiv : the Preprint Server For Biology. PMID 38187552 DOI: 10.1101/2023.12.22.573113 |
0.267 |
|
1990 |
Dill KA, Privalov PL, Gill SJ, Murphy KP. The meaning of hydrophobicity Science. 250: 297-298. PMID 2218535 DOI: 10.1126/Science.2218535 |
0.266 |
|
1986 |
Stigter D, Dill KA. Interactions in dilute monolayers of long-chain ions at the interface between n-heptane and aqueous salt solutions Langmuir. 2: 791-796. DOI: 10.1021/La00072A023 |
0.265 |
|
1996 |
Dill K, Fersht A. Folding and binding Current Opinion in Structural Biology. 6: 1-2. PMID 8794135 DOI: 10.1016/S0959-440X(96)80087-X |
0.265 |
|
1985 |
Chen SH, Dill K. Water in the hydrocarbon core of micelles (reply) Nature. 314: 385-386. DOI: 10.1038/314385B0 |
0.265 |
|
2023 |
Vlachy V, Kalyuzhnyi YV, Hribar-Lee B, Dill KA. Protein Association in Solution: Statistical Mechanical Modeling. Biomolecules. 13. PMID 38136574 DOI: 10.3390/biom13121703 |
0.262 |
|
2021 |
Sharma B, Dill KA. MELD-accelerated molecular dynamics help determine amyloid fibril structures. Communications Biology. 4: 942. PMID 34354239 DOI: 10.1038/s42003-021-02461-y |
0.261 |
|
2016 |
Maitra A, Dill KA. Modeling the Overproduction of Ribosomes when Antibacterial Drugs Act on Cells. Biophysical Journal. 110: 743-748. PMID 26840738 DOI: 10.1016/J.Bpj.2015.12.016 |
0.261 |
|
2009 |
Hribar-Lee B, Vlachy V, Dill KA. Modeling Hofmeister Effects. Acta Chimica Slovenica. 56: 196-202. PMID 20161468 |
0.261 |
|
2003 |
Song G, Thomas S, Dill KA, Scholtz JM, Amato NM. A path planning-based study of protein folding with a case study of hairpin formation in protein G and L. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 240-51. PMID 12603032 |
0.261 |
|
2014 |
Szenk M, Dill K. Trade Offs between Energy Generation and Maintenance Drive Cellular Biogenesis at High Growth Rates Biophysical Journal. 106: 380a. DOI: 10.1016/J.Bpj.2013.11.2150 |
0.259 |
|
1997 |
Sun Chan H, Dill KA. Erratum: “The effects of internal constraints on the configurations of chain molecules” [J. Chem. Phys. 92, 3118 (1990)] The Journal of Chemical Physics. 107: 10353-10353. DOI: 10.1063/1.475338 |
0.259 |
|
1989 |
Dorsey JG, Dill KA. The molecular mechanism of retention in reversed-phase liquid chromatography Chemical Reviews. 89: 331-346. DOI: 10.1021/Cr00092A005 |
0.258 |
|
2020 |
Dill K. A Central Role for Peptides and Proteins in the Chemistry to Biology Transition of the Origins of Life Biophysical Journal. 118: 172a. DOI: 10.1016/J.Bpj.2019.11.1053 |
0.256 |
|
2009 |
Lannom HK, Dill K, Denarie M, Lacombe JM, Pavia AA. 13C n.m.r. study of the structure and the metal ion binding sites of neuropeptides composed of L-Asp and L-Glu. International Journal of Peptide and Protein Research. 28: 67-78. PMID 2875970 DOI: 10.1111/J.1399-3011.1986.Tb03230.X |
0.255 |
|
1980 |
Dill KA. Dynamics of Polymer Solutions. 4. Shear-Stress-Relaxation Experiments on Solutions of DNA from Bacteriophage T2 Macromolecules. 13: 438-444. DOI: 10.1021/Ma60074A044 |
0.253 |
|
1992 |
Stickle DF, Presta LG, Dill KA, Rose GD. Hydrogen bonding in globular proteins. Journal of Molecular Biology. 226: 1143-59. PMID 1518048 DOI: 10.1016/0022-2836(92)91058-W |
0.252 |
|
2016 |
Wagoner JA, Dill KA. Molecular Motors: Power Strokes Outperform Brownian Ratchets. The Journal of Physical Chemistry. B. PMID 27136319 DOI: 10.1021/Acs.Jpcb.6B02776 |
0.245 |
|
1986 |
Marqusee JA, Dill KA. Chain configurations in lamellar semicrystalline polymer interphases Macromolecules. 19: 2420-2426. DOI: 10.1021/Ma00163A015 |
0.243 |
|
2021 |
Nassar R, Dignon GL, Razban RM, Dill KA. The protein folding problem: The role of theory. Journal of Molecular Biology. 167126. PMID 34224747 DOI: 10.1016/j.jmb.2021.167126 |
0.238 |
|
2021 |
Nassar R, Dignon GL, Razban RM, Dill KA. The protein folding problem: The role of theory. Journal of Molecular Biology. 167126. PMID 34224747 DOI: 10.1016/j.jmb.2021.167126 |
0.238 |
|
1997 |
Dill KA. Protein folding froh the perspective of simple models Faseb Journal. 11: A1292. |
0.238 |
|
2000 |
Yue K, Dill KA. Constraint-based assembly of tertiary protein structures from secondary structure elements. Protein Science : a Publication of the Protein Society. 9: 1935-46. PMID 11106167 |
0.236 |
|
2022 |
Nassar R, Brini E, Parui S, Liu C, Dignon GL, Dill KA. Accelerating Protein Folding Molecular Dynamics Using Inter-Residue Distances from Machine Learning Servers. Journal of Chemical Theory and Computation. PMID 35133832 DOI: 10.1021/acs.jctc.1c00916 |
0.234 |
|
2009 |
Watkins GA, Jones EF, Scott Shell M, VanBrocklin HF, Pan MH, Hanrahan SM, Feng JJ, He J, Sounni NE, Dill KA, Contag CH, Coussens LM, Franc BL. Development of an optimized activatable MMP-14 targeted SPECT imaging probe. Bioorganic & Medicinal Chemistry. 17: 653-9. PMID 19109023 DOI: 10.1016/J.Bmc.2008.11.078 |
0.232 |
|
1999 |
Dill KA. Strengthening biomedicine's roots. Nature. 400: 309-10. PMID 10432104 DOI: 10.1038/22415 |
0.231 |
|
1987 |
Dill KA. The mechanism of solute retention in reversed-phase liquid chromatography The Journal of Physical Chemistry. 91: 1980-1988. DOI: 10.1021/J100291A060 |
0.228 |
|
2007 |
Seitaridou E, Inamdar MM, Phillips R, Ghosh K, Dill K. Measuring flux distributions for diffusion in the small-numbers limit. The Journal of Physical Chemistry. B. 111: 2288-92. PMID 17295536 DOI: 10.1021/Jp067036J |
0.227 |
|
1993 |
De Young LR, Dill KA, Fink AL. Aggregation and denaturation of apomyoglobin in aqueous urea solutions. Biochemistry. 32: 3877-86. PMID 8471600 DOI: 10.1021/Bi00066A006 |
0.226 |
|
2000 |
Rosen JB, Phillips AT, Oh SY, Dill KA. A method for parameter optimization in computational biology. Biophysical Journal. 79: 2818-24. PMID 11106591 DOI: 10.1016/S0006-3495(00)76520-9 |
0.226 |
|
1990 |
De Young LR, Dill KA. Partitioning of nonpolar solutes into bilayers and amorphous n-alkanes [Erratum to document cited in CA112(8):63160d] The Journal of Physical Chemistry. 94: 4756-4756. DOI: 10.1021/J100374A071 |
0.223 |
|
2017 |
Wagoner JA, Dill K. Molecular Motors have Evolved to Optimize Thermodynamic Performance Biophysical Journal. 112: 279a. DOI: 10.1016/J.Bpj.2016.11.1510 |
0.222 |
|
2023 |
Urbic T, Dill KA. Simple Model of Liquid Water Dynamics. The Journal of Physical Chemistry. B. 127: 7996-8001. PMID 37672327 DOI: 10.1021/acs.jpcb.3c05212 |
0.214 |
|
1988 |
Stigter D, Dill KA. Lateral interactions among phospholipid head groups at the heptane/water interface Langmuir. 4: 200-209. DOI: 10.1021/La00079A037 |
0.213 |
|
2020 |
Brini E, Simmerling C, Dill K. Protein storytelling through physics. Science (New York, N.Y.). 370. PMID 33243857 DOI: 10.1126/science.aaz3041 |
0.211 |
|
2020 |
Mujica-Parodi LR, Amgalan A, Sultan SF, Antal B, Sun X, Skiena S, Lithen A, Adra N, Ratai EM, Weistuch C, Govindarajan ST, Strey HH, Dill KA, Stufflebeam SM, Veech RL, et al. Diet modulates brain network stability, a biomarker for brain aging, in young adults. Proceedings of the National Academy of Sciences of the United States of America. PMID 32127481 DOI: 10.1073/Pnas.1913042117 |
0.211 |
|
2022 |
Farquharson T, Agozzino L, Dill K. The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids. Life (Basel, Switzerland). 12. PMID 35629391 DOI: 10.3390/life12050724 |
0.209 |
|
1998 |
Tang KE, Dill KA. Native protein fluctuations: the conformational-motion temperature and the inverse correlation of protein flexibility with protein stability. Journal of Biomolecular Structure & Dynamics. 16: 397-411. PMID 9833677 DOI: 10.1080/07391102.1998.10508256 |
0.207 |
|
2018 |
Wagoner JA, Dill K. Evolutionary Tradeoffs in Efficiency and Turnover Rate for F0F1-ATPase Biophysical Journal. 114: 519a. DOI: 10.1016/J.Bpj.2017.11.2837 |
0.206 |
|
1985 |
DILL K, DAMAN ME, DECOSTER E, LACOMBE JM, PAVIA AA. ChemInform Abstract: STEREOCHEMISTRY OF GADOLINIUM(3+) AND MANGANESE(2+) INTERACTIONS WITH D-GLUCONAMIDE DERIVATIVES BY CARBON-13 NMR SPECTROSCOPY Chemischer Informationsdienst. 16. DOI: 10.1002/Chin.198534293 |
0.205 |
|
1999 |
Tang KES, Dill KA. How Experiments See Fluctuations of Native Proteins: Perspective from an Exact Model International Journal of Quantum Chemistry. 75: 147-164. |
0.203 |
|
1984 |
Marqusee JA, Warner M, Dill KA. Frequency dependence of NMR spin lattice relaxation in bilayer membranes The Journal of Chemical Physics. 81: 6404-6405. DOI: 10.1063/1.447554 |
0.2 |
|
2023 |
Parui S, Robertson JC, Somani S, Tresadern G, Liu C, Dill KA. MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of Chemical Information and Modeling. PMID 37093848 DOI: 10.1021/acs.jcim.3c00243 |
0.196 |
|
2023 |
Pachter JA, Dill KA. Nonequilibrium statistical physics beyond the ideal heat bath approximation. Physical Review. E. 107: 014131. PMID 36797947 DOI: 10.1103/PhysRevE.107.014131 |
0.195 |
|
2022 |
Liu C, Brini E, Dill KA. Accelerating Molecular Dynamics Enrichments of High-Affinity Ligands for Proteins. Journal of Chemical Theory and Computation. 18: 374-379. PMID 34877865 DOI: 10.1021/acs.jctc.1c00855 |
0.192 |
|
2006 |
Hockenmaier J, Joshi AK, Dill KA. Protein folding and chart parsing Coling/Acl 2006 - Emnlp 2006: 2006 Conference On Empirical Methods in Natural Language Processing, Proceedings of the Conference. 293-300. |
0.187 |
|
2023 |
Kocher CD, Dill KA. Darwinian evolution as a dynamical principle. Proceedings of the National Academy of Sciences of the United States of America. 120: e2218390120. PMID 36881627 DOI: 10.1073/pnas.2218390120 |
0.183 |
|
2023 |
Kocher C, Dill KA. Origins of life: first came evolutionary dynamics. Qrb Discovery. 4: e4. PMID 37529034 DOI: 10.1017/qrd.2023.2 |
0.181 |
|
1991 |
Chan HS, Dill KA. Polymer principles in protein structure and stability. Annual Review of Biophysics and Biophysical Chemistry. 20: 447-90. PMID 1867723 DOI: 10.1146/annurev.bb.20.060191.002311 |
0.177 |
|
2003 |
Dill KA. Editorial: In memory of Peter A. Kollman Biopolymers. 68: 2. DOI: 10.1002/Bip.10327 |
0.174 |
|
2020 |
Weistuch C, Mujica-Parodi L, Amgalan A, Fahad Sultan S, Dill KA. Ketone Diets Can Reverse Some Brain Activities that are Lost in Aging Biophysical Journal. 118: 288a. DOI: 10.1016/J.Bpj.2019.11.1639 |
0.174 |
|
2018 |
Dill KA. Selected Publications of Ken A. Dill. The Journal of Physical Chemistry. B. 122: 5269-5277. PMID 29847954 DOI: 10.1021/Acs.Jpcb.8B02467 |
0.171 |
|
2018 |
Dill KA. Colleagues of Ken A. Dill. The Journal of Physical Chemistry. B. 122: 5267-5268. PMID 29847955 DOI: 10.1021/Acs.Jpcb.8B02468 |
0.17 |
|
2017 |
Dill KA, Holovko MF, Hribar-Lee B, Malikova N. The scientific life of Vojko Vlachy Journal of Molecular Liquids. 228: 1-3. DOI: 10.1016/J.Molliq.2016.11.073 |
0.169 |
|
2018 |
Dill KA. Autobiography of Ken A. Dill. The Journal of Physical Chemistry. B. 122: 5263-5266. PMID 29847956 DOI: 10.1021/Acs.Jpcb.8B02469 |
0.166 |
|
1992 |
Mingins J, Stigter D, Dill KA. Phospholipid interactions in model membrane systems. I. Experiments on monolayers. Biophysical Journal. 61: 1603-15. PMID 1617140 DOI: 10.1016/S0006-3495(92)81964-1 |
0.165 |
|
1988 |
De Young LR, Dill KA. Solute partitioning into lipid bilayer membranes. Biochemistry. 27: 5281-9. PMID 3167046 DOI: 10.1021/bi00414a050 |
0.161 |
|
2023 |
Glukhov E, Kalitin D, Stepanenko D, Zhu Y, Nguen T, Jones G, Simmerling C, Mitchell JC, Vajda S, Dill KA, Padhorny D, Kozakov D. MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction. Biorxiv : the Preprint Server For Biology. PMID 38077000 DOI: 10.1101/2023.11.29.569310 |
0.156 |
|
2007 |
Bizjak A, Urbič T, Vlachy V, Dill KA. The three-dimensional "Mercedes Benz" model of water Acta Chimica Slovenica. 54: 532-537. |
0.155 |
|
1993 |
De Young LR, Fink AL, Dill KA. Aggregation of globular proteins Accounts of Chemical Research. 26: 614-620. DOI: 10.1021/Ar00036A002 |
0.133 |
|
2008 |
Dill KA. Theory for the separation of very large DNA molecules by radial migration. Biophysical Chemistry. 10: 327-34. PMID 16997227 DOI: 10.1016/0301-4622(79)85020-6 |
0.133 |
|
2020 |
de Graff AM, Mosedale DE, Sharp T, Dill KA, Grainger DJ. Proteostasis is adaptive: Balancing chaperone holdases against foldases. Plos Computational Biology. 16: e1008460. PMID 33315891 DOI: 10.1371/journal.pcbi.1008460 |
0.123 |
|
2023 |
Razban RM, Antal BB, Dill KA, Mujica-Parodi LR. Brain signaling becomes less integrated and more segregated with age. Biorxiv : the Preprint Server For Biology. PMID 38014139 DOI: 10.1101/2023.11.17.567376 |
0.112 |
|
1992 |
Cole LA, Dorsey JG, Dill KA. Temperature dependence of retention in reversed-phase liquid chromatography. 2. Mobile-phase considerations. Analytical Chemistry. 64: 1324-7. PMID 1503213 DOI: 10.1021/ac00037a005 |
0.103 |
|
2021 |
Weistuch C, Mujica-Parodi LR, Dill K. The Refractory Period Matters: Unifying Mechanisms of Macroscopic Brain Waves. Neural Computation. 1-19. PMID 33617741 DOI: 10.1162/neco_a_01371 |
0.103 |
|
2013 |
Dill KA. Biophysics. Introduction. Annual Review of Biophysics. 42. PMID 23798065 DOI: 10.1146/annurev-bb-42-050113-100001 |
0.099 |
|
2023 |
Matsuzaki T, Weistuch C, de Graff A, Dill KA, Balázsi G. Transcriptional drift in aging cells: A global de-controller. Biorxiv : the Preprint Server For Biology. PMID 38045342 DOI: 10.1101/2023.11.21.568122 |
0.096 |
|
2021 |
Kocher C, Agozzino L, Dill K. Nanoscale Catalyst Chemotaxis Can Drive the Assembly of Functional Pathways. The Journal of Physical Chemistry. B. 125: 8781-8786. PMID 34324352 DOI: 10.1021/acs.jpcb.1c04498 |
0.089 |
|
2022 |
Pachter JA, Dill KA, Sodhi JK, Benet LZ. Review of the application of Kirchhoff's Laws of series and parallel flows to pharmacology: Defining organ clearance. Pharmacology & Therapeutics. 239: 108278. PMID 36075300 DOI: 10.1016/j.pharmthera.2022.108278 |
0.088 |
|
1989 |
Dill KA. Protein surgery. Protein Engineering. 1: 369-71. PMID 3508283 DOI: 10.1093/protein/1.5.369 |
0.083 |
|
2020 |
Weistuch C, Agozzino L, Mujica-Parodi LR, Dill KA. Inferring a network from dynamical signals at its nodes. Plos Computational Biology. 16: e1008435. PMID 33253160 DOI: 10.1371/journal.pcbi.1008435 |
0.083 |
|
1991 |
Kollman PA, Dill KA. Decisions in force field development: an alternative to those described by Roterman et al. (J. Biomol. Struct. Dyn. 7, 421 (1989)). Journal of Biomolecular Structure & Dynamics. 8: 1103-7; discussion 1. PMID 1892580 DOI: 10.1080/07391102.1991.10507872 |
0.083 |
|
1985 |
Cantor RS, Dill KA. Statistical thermodynamic theory for the melting of n-alkanes from their rotator phases Macromolecules. 18: 1875-1882. DOI: 10.1021/ma00152a015 |
0.082 |
|
2023 |
Razban RM, Pachter JA, Dill KA, Mujica-Parodi LR. Early path dominance as a principle for neurodevelopment. Proceedings of the National Academy of Sciences of the United States of America. 120: e2218007120. PMID 37053187 DOI: 10.1073/pnas.2218007120 |
0.078 |
|
2021 |
Wagoner JA, Dill KA. Evolution of mechanical cooperativity among myosin II motors. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33975956 DOI: 10.1073/pnas.2101871118 |
0.076 |
|
2003 |
Lucas A, Dill KA. Statistical mechanics of pseudoknot polymers Journal of Chemical Physics. 119: 2414-2421. DOI: 10.1063/1.1587129 |
0.071 |
|
2001 |
Kalyuzhnyi YV, Vlachy V, Dill KA. Hydration of simple ions. Effect of the charge density Acta Chimica Slovenica. 48: 309-316. |
0.071 |
|
1989 |
DORSEY JG, DILL KA. ChemInform Abstract: The Molecular Mechanism of Retention in Reversed-Phase Liquid Chromatography Cheminform. 20. DOI: 10.1002/chin.198931349 |
0.071 |
|
2006 |
Hribar-Lee B, Dill KA. Modeling simple alcohols in two dimensions Acta Chimica Slovenica. 53: 257-263. |
0.064 |
|
2008 |
Dill KA. The second law and biology Aip Conference Proceedings. 1033: 90-110. DOI: 10.1063/1.2979068 |
0.062 |
|
2021 |
Weistuch C, Mujica-Parodi LR, Razban RM, Antal B, van Nieuwenhuizen H, Amgalan A, Dill KA. Metabolism modulates network synchrony in the aging brain. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34588302 DOI: 10.1073/pnas.2025727118 |
0.059 |
|
2023 |
Weistuch C, Murgas KA, Zhu J, Norton L, Dill KA, Deasy JO, Tannenbaum AR. Cancer heterogeneity is defined by normal cellular trade-offs. Biorxiv : the Preprint Server For Biology. PMID 37090606 DOI: 10.1101/2023.04.12.536595 |
0.049 |
|
2015 |
Dill KA, Shera W. Empowering Human Services Organizations to Embrace Evidence-Informed Practice: International Best Practices Human Service Organizations Management, Leadership and Governance. 39: 323-338. DOI: 10.1080/23303131.2015.1050141 |
0.025 |
|
2023 |
Schmit J, Dill KA. Next-Gen Biophysics: Look to the Forest, Beyond the Trees. Annual Review of Biophysics. 52: v-viii. PMID 37159295 DOI: 10.1146/annurev-bb-52-030923-100001 |
0.015 |
|
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