Olivier Bouchez - Publications

Affiliations: 
Toulouse 3 

108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Payros D, Alonso H, Malaga W, Volle A, Mazères S, Déjean S, Valière S, Moreau F, Balor S, Stella A, Combes-Soia L, Burlet-Schiltz O, Bouchez O, Nigou J, Astarie-Dequeker C, et al. Rv0180c contributes to Mycobacterium tuberculosis cell shape and to infectivity in mice and macrophages. Plos Pathogens. 17: e1010020. PMID 34724002 DOI: 10.1371/journal.ppat.1010020  1
2021 Jehl F, Degalez F, Bernard M, Lecerf F, Lagoutte L, Désert C, Coulée M, Bouchez O, Leroux S, Abasht B, Tixier-Boichard M, Bed'hom B, Burlot T, Gourichon D, Bardou P, et al. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Frontiers in Genetics. 12: 655707. PMID 34262593 DOI: 10.3389/fgene.2021.655707  1
2021 Bossaert M, Pipier A, Riou JF, Noirot C, Nguyễn LT, Serre RF, Bouchez O, Defrancq E, Calsou P, Britton S, Gomez D. Transcription-associated topoisomerase 2α activity is a major effector of cytotoxicity induced by G-quadruplex ligands. Elife. 10. PMID 34180392 DOI: 10.7554/eLife.65184  1
2021 Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, ... ... Bouchez O, et al. Population genomics of apricots unravels domestication history and adaptive events. Nature Communications. 12: 3956. PMID 34172741 DOI: 10.1038/s41467-021-24283-6  1
2021 Blanc F, Maroilley T, Revilla M, Lemonnier G, Leplat JJ, Billon Y, Ravon L, Bouchez O, Bidanel JP, Bed'Hom B, Pinard-van der Laan MH, Estellé J, Rogel-Gaillard C. Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs. Genetics, Selection, Evolution : Gse. 53: 24. PMID 33731010 DOI: 10.1186/s12711-021-00614-5  1
2021 Canivet CM, David N, Pailhoriès H, Briand M, Guy CD, Bouchez O, Hunault G, Fizanne L, Lannes A, Oberti F, Fouchard I, Calès P, Diehl AM, Barret M, Boursier J. Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease. Alimentary Pharmacology & Therapeutics. PMID 33482026 DOI: 10.1111/apt.16262  1
2021 Ramírez-Ayala LC, Rocha D, Ramos-Onsins SE, Leno-Colorado J, Charles M, Bouchez O, Rodríguez-Valera Y, Pérez-Enciso M, Ramayo-Caldas Y. Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions. Genetics, Selection, Evolution : Gse. 53: 3. PMID 33397281 DOI: 10.1186/s12711-020-00597-9  0.01
2020 Gopalan-Nair R, Jardinaud MF, Legrand L, Landry D, Barlet X, Lopez-Roques C, Vandecasteele C, Bouchez O, Genin S, Guidot A. Convergent rewiring of the virulence regulatory network promotes adaptation of Ralstonia solanacearum on resistant tomato. Molecular Biology and Evolution. PMID 33306125 DOI: 10.1093/molbev/msaa320  1
2020 Phan NT, Orjuela J, Danchin EGJ, Klopp C, Perfus-Barbeoch L, Kozlowski DK, Koutsovoulos GD, Lopez-Roques C, Bouchez O, Zahm M, Besnard G, Bellafiore S. Genome structure and content of the rice root-knot nematode (). Ecology and Evolution. 10: 11006-11021. PMID 33144944 DOI: 10.1002/ece3.6680  1
2020 Lallias D, Bernard M, Ciobotaru C, Dechamp N, Labbé L, Goardon L, Le Calvez JM, Bideau M, Fricot A, Prézelin A, Charles M, Moroldo M, Cousin X, Bouchez O, Roulet A, et al. Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics. 1-22. PMID 33126823 DOI: 10.1080/15592294.2020.1834924  1
2020 Fraslin C, Phocas F, Bestin A, Charles M, Bernard M, Krieg F, Dechamp N, Ciobotaru C, Hozé C, Petitprez F, Milhes M, Lluch J, Bouchez O, Poncet C, Hocdé P, et al. Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing. Scientific Reports. 10: 17693. PMID 33077766 DOI: 10.1038/s41598-020-74757-8  1
2020 Dussert Y, Legrand L, Mazet ID, Couture C, Piron MC, Serre RF, Bouchez O, Mestre P, Toffolatti SL, Giraud T, Delmotte F. Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola. Current Biology : Cb. PMID 32795448 DOI: 10.1016/j.cub.2020.07.057  1
2020 Poelstra J, Salmona J, Tiley GP, Schüßler D, Blanco MB, Andriambeloson JB, Bouchez O, Campbell CR, Etter PD, Hohenlohe PA, Hunnicutt KE, Iribar A, Johnson EA, Kappeler PM, Larsen PA, et al. Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. Systematic Biology. PMID 32642760 DOI: 10.1093/Sysbio/Syaa053  1
2020 Duranton M, Allal F, Valière S, Bouchez O, Bonhomme F, Gagnaire PA. The contribution of ancient admixture to reproductive isolation between European sea bass lineages. Evolution Letters. 4: 226-242. PMID 32547783 DOI: 10.1002/evl3.169  1
2020 Paës C, Gidenne T, Bébin K, Duperray J, Gohier C, Guené-Grand E, Rebours G, Bouchez O, Barilly C, Aymard P, Combes S. Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota. Frontiers in Veterinary Science. 7: 261. PMID 32478111 DOI: 10.3389/fvets.2020.00261  1
2020 Di Giovanni D, Lepetit D, Guinet B, Bennetot B, Boulesteix M, Couté Y, Bouchez O, Ravallec M, Varaldi J. A Behavior-Manipulating Virus Relative as a Source of Adaptive Genes for Drosophila Parasitoids. Molecular Biology and Evolution. 37: 2791-2807. PMID 32080746 DOI: 10.1093/molbev/msaa030  0.01
2020 Aubé J, Senin P, Bonin P, Pringault O, Jeziorski C, Bouchez O, Klopp C, Guyoneaud R, Goñi-Urriza M. Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning. Microbial Ecology. PMID 32076743 DOI: 10.1007/s00248-020-01493-x  1
2020 Tang M, Bouchez O, Cruveiller S, Masson-Boivin C, Capela D. Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts. Mbio. 11. PMID 31992622 DOI: 10.1128/mBio.03129-19  1
2020 Takehana Y, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Donnadieu C, Barrachina C, Journot L, Kawaguchi M, Yasumasu S, Ansai S, Naruse K, Inoue K, Shinzato C, et al. Genome Sequence of the Euryhaline Javafish Medaka, : A Small Aquarium Fish Model for Studies on Adaptation To Salinity. G3 (Bethesda, Md.). PMID 31988161 DOI: 10.1534/G3.119.400725  1
2020 Belouah I, Bénard C, Denton A, Blein-Nicolas M, Balliau T, Teyssier E, Gallusci P, Bouchez O, Usadel B, Zivy M, Gibon Y, Colombié S. Transcriptomic and proteomic data in developing tomato fruit. Data in Brief. 28: 105015. PMID 31909114 DOI: 10.1016/j.dib.2019.105015  1
2020 Feron R, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Eché C, Valière S, Donnadieu C, Haffray P, Bestin A, Morvezen R, Acloque H, Euclide PT, Wen M, et al. Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens. Molecular Ecology Resources. PMID 31903688 DOI: 10.1111/1755-0998.13133  1
2019 Milon N, Fuentes Rojas JL, Castinel A, Bigot L, Bouwmans G, Baudelle K, Boutonnet A, Gibert A, Bouchez O, Donnadieu C, Ginot F, Bancaud A. A tunable filter for high molecular weight DNA selection and linked-read sequencing. Lab On a Chip. PMID 31796946 DOI: 10.1039/c9lc00965e  0.01
2019 Faure C, Veyssière M, Boëlle B, San Clemente H, Bouchez O, Lopez-Roques C, Chaubet A, Martinez Y, Bezouška K, Suchánek M, Gaulin E, Rey T, Dumas B. Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite ATCC 38472. G3 (Bethesda, Md.). PMID 31792008 DOI: 10.1534/g3.119.400746  1
2019 Cogne Y, Degli-Esposti D, Pible O, Gouveia D, François A, Bouchez O, Eché C, Ford A, Geffard O, Armengaud J, Chaumot A, Almunia C. De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups. Scientific Data. 6: 184. PMID 31562330 DOI: 10.1038/s41597-019-0192-5  0.01
2019 Vergnes S, Gayrard D, Veyssiere M, Toulotte J, Martinez Y, Dumont V, Bouchez O, Rey T, Dumas B. Phyllosphere colonisation by a soil Streptomyces sp. promotes plant defense responses against fungal infection. Molecular Plant-Microbe Interactions : Mpmi. PMID 31544656 DOI: 10.1094/MPMI-05-19-0142-R  1
2019 Bahrman N, Hascoët E, Jaminon O, Dépta F, Hû JF, Bouchez O, Lejeune-Hénaut I, Delbreil B, Legrand S. Identification of Genes Differentially Expressed in Response to Cold in Using RNA Sequencing Analyses. Plants (Basel, Switzerland). 8. PMID 31443248 DOI: 10.3390/plants8080288  0.01
2019 Combier M, Evangelisti E, Piron MC, Rengel D, Legrand L, Shenhav L, Bouchez O, Schornack S, Mestre P. A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species. Plos One. 14: e0220184. PMID 31356604 DOI: 10.1371/journal.pone.0220184  1
2019 Le Cam B, Sargent D, Gouzy J, Amselem J, Bellanger MN, Bouchez O, Brown S, Caffier V, De Gracia Coquerel M, Debuchy R, Duvaux L, Payen T, Sannier M, Shiller J, Collemare J, et al. Population Genome Sequencing of the Scab Fungal Species and . G3 (Bethesda, Md.). PMID 31253647 DOI: 10.1534/g3.119.400047  1
2019 Read T, Fortun-Lamothe L, Pascal G, Le Boulch M, Cauquil L, Gabinaud B, Bannelier C, Balmisse E, Destombes N, Bouchez O, Gidenne T, Combes S. Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits. Frontiers in Microbiology. 10: 973. PMID 31134019 DOI: 10.3389/fmicb.2019.00973  1
2019 Torres-Cortés G, Garcia BJ, Compant S, Rezki S, Jones P, Préveaux A, Briand M, Roulet A, Bouchez O, Jacobson D, Barret M. Differences in resource use lead to coexistence of seed-transmitted microbial populations. Scientific Reports. 9: 6648. PMID 31040301 DOI: 10.1038/S41598-019-42865-9  1
2019 Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, et al. Modeling protein destiny in developing fruit. Plant Physiology. PMID 31015299 DOI: 10.1104/pp.19.00086  1
2019 Dussert Y, Mazet ID, Couture C, Gouzy J, Piron MC, Kuchly C, Bouchez O, Rispe C, Mestre P, Delmotte F. A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes. Genome Biology and Evolution. PMID 30847481 DOI: 10.1093/Gbe/Evz048  1
2019 Karam MJ, Souleman D, Schvartzman MS, Gallina S, Spielmann J, Poncet C, Bouchez O, Pauwels M, Hanikenne M, Frérot H. Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri. Heredity. PMID 30670845 DOI: 10.1038/S41437-019-0184-4  0.01
2019 Hérault F, Houée-Bigot M, Baéza E, Bouchez O, Esquerré D, Klopp C, Diot C. RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed. Bmc Genomics. 20: 13. PMID 30616512 DOI: 10.1186/s12864-018-5415-1  1
2018 Masachis S, Tourasse NJ, Chabas S, Bouchez O, Darfeuille F. FASTBAC-Seq: Functional Analysis of Toxin-Antitoxin Systems in Bacteria by Deep Sequencing. Methods in Enzymology. 612: 67-100. PMID 30502958 DOI: 10.1016/bs.mie.2018.08.033  0.01
2018 Pecrix Y, Buendia L, Penouilh-Suzette C, Maréchaux M, Legrand L, Bouchez O, Rengel D, Gouzy J, Cottret L, Vear F, Godiard L. Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii. The Plant Journal : For Cell and Molecular Biology. PMID 30422341 DOI: 10.1111/tpj.14157  1
2018 Pecrix Y, Staton SE, Sallet E, Lelandais-Brière C, Moreau S, Carrère S, Blein T, Jardinaud MF, Latrasse D, Zouine M, Zahm M, Kreplak J, Mayjonade B, Satgé C, Perez M, ... ... Bouchez O, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nature Plants. PMID 30397259 DOI: 10.1038/S41477-018-0286-7  1
2018 Zarrillo S, Gaikwad N, Lanaud C, Powis T, Viot C, Lesur I, Fouet O, Argout X, Guichoux E, Salin F, Solorzano RL, Bouchez O, Vignes H, Severts P, Hurtado J, et al. The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon. Nature Ecology & Evolution. PMID 30374172 DOI: 10.1038/S41559-018-0697-X  0.01
2018 Segura A, Bertoni M, Auffret P, Klopp C, Bouchez O, Genthon C, Durand A, Bertin Y, Forano E. Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents. Bmc Genomics. 19: 766. PMID 30352567 DOI: 10.1186/s12864-018-5167-y  1
2018 Illikoud N, Klopp C, Roulet A, Bouchez O, Marsaud N, Jaffrès E, Zagorec M. One complete and three draft genome sequences of four strains, CD 337, TAP 175, BSAS1 3 and EBP 3070. Standards in Genomic Sciences. 13: 22. PMID 30338025 DOI: 10.1186/s40793-018-0333-z  1
2018 Payelleville A, Legrand L, Ogier JC, Roques C, Roulet A, Bouchez O, Mouammine A, Givaudan A, Brillard J. The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines. Scientific Reports. 8: 12091. PMID 30108278 DOI: 10.1038/s41598-018-30620-5  1
2018 Rousseau E, Tamisier L, Fabre F, Simon V, Szadkowski M, Bouchez O, Zanchetta C, Girardot G, Mailleret L, Grognard F, Palloix A, Moury B. Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants. Molecular Plant Pathology. PMID 30074299 DOI: 10.1111/mpp.12730  0.01
2018 Frachon L, Bartoli C, Carrère S, Bouchez O, Chaubet A, Gautier M, Roby D, Roux F. A Genomic Map of Climate Adaptation in at a Micro-Geographic Scale. Frontiers in Plant Science. 9: 967. PMID 30042773 DOI: 10.3389/fpls.2018.00967  1
2018 Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques MA, Barret M. Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Frontiers in Plant Science. 9: 902. PMID 30008730 DOI: 10.3389/fpls.2018.00902  1
2018 Duron O, Morel O, Noël V, Buysse M, Binetruy F, Lancelot R, Loire E, Ménard C, Bouchez O, Vavre F, Vial L. Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways. Current Biology : Cb. PMID 29861133 DOI: 10.1016/j.cub.2018.04.038  0.01
2018 Bartoli C, Frachon L, Barret M, Rigal M, Huard-Chauveau C, Mayjonade B, Zanchetta C, Bouchez O, Roby D, Carrère S, Roux F. In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana. The Isme Journal. PMID 29849170 DOI: 10.1038/s41396-018-0152-7  1
2018 Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengellé J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, ... ... Bouchez O, et al. Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation. Bmc Biology. 16: 43. PMID 29669603 DOI: 10.1186/S12915-018-0508-5  1
2018 Gschloessl B, Dorkeld F, Berges H, Beydon G, Bouchez O, Branco M, Bretaudeau A, Burban C, Dubois E, Gauthier P, Lhuillier E, Nichols J, Nidelet S, Rocha S, Sauné L, et al. Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae). Molecular Ecology Resources. PMID 29352511 DOI: 10.1111/1755-0998.12756  1
2018 Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, et al. Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology & Evolution. 2: 194. PMID 29208992 DOI: 10.1038/S41559-017-0405-2  1
2017 Wragg D, Techer MA, Canale-Tabet K, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Clémencet J, Delatte H, Vignal A. Autosomal and mitochondrial adaptation following admixture: a case study on the honeybees of Reunion Island. Genome Biology and Evolution. PMID 29202174 DOI: 10.1093/gbe/evx247  1
2017 Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, et al. Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology & Evolution. 1: 1551-1561. PMID 29185515 DOI: 10.1038/S41559-017-0297-1  1
2017 Van de Paer C, Bouchez O, Besnard G. Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae). Molecular Ecology Resources. PMID 29172252 DOI: 10.1111/1755-0998.12742  0.01
2017 Auffret P, Segura A, Bertin Y, Klopp C, Bouchez O, Kérourédan M, Bibbal D, Brugère H, Forano E. Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France. Genome Announcements. 5. PMID 28983004 DOI: 10.1128/genomeA.01097-17  1
2017 Fariello MI, Boitard S, Mercier S, Robelin D, Faraut T, Arnould C, Recoquillay J, Bouchez O, Salin G, Dehais P, Gourichon D, Leroux S, Pitel F, Leterrier C, SanCristobal M. Accounting for Linkage Disequilibrium in genome scans for selection without individual genotypes: the local score approach. Molecular Ecology. PMID 28394503 DOI: 10.1111/Mec.14141  1
2017 Bourgeois YX, Delahaie B, Gautier M, Lhuillier E, Malé PG, Bertrand JA, Cornuault J, Wakamatsu K, Bouchez O, Mould C, Bruxaux J, Holota H, Milá B, Thébaud C. A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird. Royal Society Open Science. 4: 160805. PMID 28386436 DOI: 10.1098/rsos.160805  1
2017 Demars J, Cano M, Drouilhet L, Plisson-Petit F, Bardou P, Fabre S, Servin B, Sarry J, Woloszyn F, Mulsant P, Foulquier D, Carrière F, Aletru M, Rodde N, Cauet S, ... Bouchez O, et al. Genome-Wide Identification Of The Mutation Underlying Fleece Variation And Discriminating Ancestral Hairy Species From Modern Woolly Sheep. Molecular Biology and Evolution. PMID 28379502 DOI: 10.1093/molbev/msx114  1
2016 Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha E, Cruveiller S, Jauneau A, Capela D, Masson-Boivin C. Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Molecular Ecology. PMID 27770459 DOI: 10.1111/mec.13895  1
2016 Combes S, Massip K, Martin O, Furbeyre H, Cauquil L, Pascal G, Bouchez O, Le Floc'h N, Zemb O, Oswald IP, Gidenne T. Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits. Animal : An International Journal of Animal Bioscience. 1-10. PMID 27745563 DOI: 10.1017/S1751731116002007  1
2016 Aubé J, Senin P, Pringault O, Bonin P, Deflandre B, Bouchez O, Bru N, Biritxinaga-Etchart E, Klopp C, Guyoneaud R, Goñi-Urriza M. The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats. Marine Pollution Bulletin. 111: 115-25. PMID 27449831 DOI: 10.1016/j.marpolbul.2016.07.023  1
2016 Balagué C, Gouget A, Bouchez O, Souriac C, Haget N, Boutet-Mercey S, Govers F, Roby D, Canut H. The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling. Molecular Plant Pathology. PMID 27399963 DOI: 10.1111/mpp.12457  1
2016 Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A. Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly. Scientific Reports. 6: 27168. PMID 27255426 DOI: 10.1038/srep27168  1
2016 Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, et al. Correction: Design and Characterization of a 52K SNP Chip for Goats. Plos One. 11: e0152632. PMID 27011020 DOI: 10.1371/Journal.Pone.0152632  1
2016 Boutet G, Alves Carvalho S, Falque M, Peterlongo P, Lhuillier E, Bouchez O, Lavaud C, Pilet-Nayel ML, Rivière N, Baranger A. SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. Bmc Genomics. 17: 121. PMID 26892170 DOI: 10.1186/s12864-016-2447-2  1
2016 Koechler S, Bertin PN, Plewniak F, Baltenweck R, Casiot C, Heipieper HJ, Bouchez O, Arsène-Ploetze F, Hugueney P, Halter D. Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches. Environmental Microbiology. 18: 1289-300. PMID 26769162 DOI: 10.1111/1462-2920.13227  1
2016 St John EP, Simen BB, Turenchalk GS, Braverman MS, Abbate I, Aerssens J, Bouchez O, Gabriel C, Izopet J, Meixenberger K, Di Giallonardo F, Schlapbach R, Paredes R, Sakwa J, Schmitz-Agheguian GG, et al. A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing. Plos One. 11: e0146687. PMID 26756901 DOI: 10.1371/journal.pone.0146687  1
2015 Rupp R, Senin P, Sarry J, Allain C, Tasca C, Ligat L, Portes D, Woloszyn F, Bouchez O, Tabouret G, Lebastard M, Caubet C, Foucras G, Tosser-Klopp G. A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model. Plos Genetics. 11: e1005629. PMID 26658352 DOI: 10.1371/journal.pgen.1005629  1
2015 Lluch J, Servant F, Païssé S, Valle C, Valière S, Kuchly C, Vilchez G, Donnadieu C, Courtney M, Burcelin R, Amar J, Bouchez O, Lelouvier B. The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline. Plos One. 10: e0142334. PMID 26544955 DOI: 10.1371/journal.pone.0142334  1
2015 Campbell-Sills H, El Khoury M, Favier M, Romano A, Biasioli F, Spano G, Sherman DJ, Bouchez O, Coton E, Coton M, Okada S, Tanaka N, Dols-Lafargue M, Lucas PM. Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines. Genome Biology and Evolution. 7: 1506-18. PMID 25977455 DOI: 10.1093/gbe/evv084  1
2015 Pringault O, Aube J, Bouchez O, Klopp C, Mariette J, Escudie F, Senin P, Goni-Urriza M. Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat. Chemosphere. 135: 189-201. PMID 25957138 DOI: 10.1016/j.chemosphere.2015.04.037  1
2015 Blanchet S, Bouchez O, Chapman CA, Etter PD, Goldberg TL, Johnson EA, Jones JH, Loot G, Omeja PA, Rey O, Ruiz-Lopez MJ, Switzer WM, Ting N. Genomic resources notes accepted 1 December 2014 - 31 January 2015. Molecular Ecology Resources. 15: 684. PMID 25857929 DOI: 10.1111/1755-0998.12388  1
2015 Recoquillay J, Pitel F, Arnould C, Leroux S, Dehais P, Moréno C, Calandreau L, Bertin A, Gourichon D, Bouchez O, Vignal A, Fariello MI, Minvielle F, Beaumont C, Leterrier C, et al. A medium density genetic map and QTL for behavioral and production traits in Japanese quail. Bmc Genomics. 16: 10. PMID 25609057 DOI: 10.1186/s12864-014-1210-9  1
2015 Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacquesa MA. Emergence shapes the structure of the seed microbiota. Applied and Environmental Microbiology. 81: 1257-66. PMID 25501471 DOI: 10.1128/AEM.03722-14  1
2015 Recoquillay J, Pitel F, Arnould C, Leroux S, Dehais P, Moréno C, Calandreau L, Bertin A, Gourichon D, Bouchez O, Vignal A, Fariello MI, Minvielle F, Beaumont C, Leterrier C, et al. A medium density genetic map and QTL for behavioral and production traits in japanese quail Bmc Genomics. 16. DOI: 10.1186/s12864-014-1210-9  1
2015 Pringault O, Aube J, Bouchez O, Klopp C, Mariette J, Escudie F, Senin P, Goni-Urriza M. Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat Chemosphere. 135: 189-201. DOI: 10.1016/j.chemosphere.2015.04.037  1
2014 Remigi P, Capela D, Clerissi C, Tasse L, Torchet R, Bouchez O, Batut J, Cruveiller S, Rocha EP, Masson-Boivin C. Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer. Plos Biology. 12: e1001942. PMID 25181317 DOI: 10.1371/journal.pbio.1001942  1
2014 Volant A, Bruneel O, Desoeuvre A, Héry M, Casiot C, Bru N, Delpoux S, Fahy A, Javerliat F, Bouchez O, Duran R, Bertin PN, Elbaz-Poulichet F, Lauga B. Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage. Fems Microbiology Ecology. 90: 247-63. PMID 25070063 DOI: 10.1111/1574-6941.12394  1
2014 Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, Brøndum RF, Liao X, Djari A, Rodriguez SC, Grohs C, Esquerré D, Bouchez O, Rossignol MN, Klopp C, Rocha D, et al. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics. 46: 858-65. PMID 25017103 DOI: 10.1038/Ng.3034  1
2014 Lhoumaud P, Hennion M, Gamot A, Cuddapah S, Queille S, Liang J, Micas G, Morillon P, Urbach S, Bouchez O, Severac D, Emberly E, Zhao K, Cuvier O. Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes. The Embo Journal. 33: 1599-613. PMID 24916307 DOI: 10.15252/Embj.201385965  1
2014 Simen BB, Braverman MS, Abbate I, Aerssens J, Bidet Y, Bouchez O, Gabriel C, Izopet J, Kessler HH, Stelzl E, Di Giallonardo F, Schlapbach R, Radonic A, Paredes R, Recordon-Pinson P, et al. An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing Journal of Virological Methods. 204: 31-37. PMID 24731928 DOI: 10.1016/j.jviromet.2014.04.007  1
2014 Vasaï F, Ricaud KB, Cauquil L, Daniel P, Peillod C, Gontier K, Tizaoui A, Bouchez O, Combes S, Davail S. Lactobacillus sakei modulates mule duck microbiota in ileum and ceca during overfeeding. Poultry Science. 93: 916-25. PMID 24706969 DOI: 10.3382/ps.2013-03497  1
2014 Liang J, Lacroix L, Gamot A, Cuddapah S, Queille S, Lhoumaud P, Lepetit P, Martin PG, Vogelmann J, Court F, Hennion M, Micas G, Urbach S, Bouchez O, Nöllmann M, et al. Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing. Molecular Cell. 53: 672-81. PMID 24486021 DOI: 10.1016/J.Molcel.2013.12.029  1
2014 Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, et al. Design and characterization of a 52K SNP chip for goats. Plos One. 9: e86227. PMID 24465974 DOI: 10.1371/Journal.Pone.0086227  1
2014 Combes S, Gidenne T, Cauquil L, Bouchez O, Fortun-Lamothe L. Coprophagous behavior of rabbit pups affects implantation of cecal microbiota and health status. Journal of Animal Science. 92: 652-65. PMID 24398828 DOI: 10.2527/jas.2013-6394  1
2014 Rey M, Enjalbert F, Combes S, Cauquil L, Bouchez O, Monteils V. Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential. Journal of Applied Microbiology. 116: 245-57. PMID 24279326 DOI: 10.1111/jam.12405  1
2014 Vasaï F, Brugirard Ricaud K, Bernadet MD, Cauquil L, Bouchez O, Combes S, Davail S. Overfeeding and genetics affect the composition of intestinal microbiota in Anas platyrhynchos (Pekin) and Cairina moschata (Muscovy) ducks. Fems Microbiology Ecology. 87: 204-16. PMID 24102552 DOI: 10.1111/1574-6941.12217  1
2014 Tonnabel J, Olivieri I, Mignot A, Rebelo A, Justy F, Santoni S, Caroli S, Sauné L, Bouchez O, Douzery EJ. Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): a next-generation sequencing transcriptomic approach. Molecular Phylogenetics and Evolution. 70: 37-46. PMID 23948865 DOI: 10.1016/J.Ympev.2013.07.027  1
2013 Bonnet A, Cabau C, Bouchez O, Sarry J, Marsaud N, Foissac S, Woloszyn F, Mulsant P, Mandon-Pepin B. An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog. Bmc Genomics. 14: 904. PMID 24350644 DOI: 10.1186/1471-2164-14-904  1
2013 Plewniak F, Koechler S, Navet B, Dugat-Bony E, Bouchez O, Peyret P, Séby F, Battaglia-Brunet F, Bertin PN. Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments. Molecular Ecology. 22: 4870-83. PMID 23998659 DOI: 10.1111/mec.12432  1
2013 Bourgeois YX, Lhuillier E, Cézard T, Bertrand JA, Delahaie B, Cornuault J, Duval T, Bouchez O, Milá B, Thébaud C. Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome. Molecular Ecology Resources. 13: 899-907. PMID 23855484 DOI: 10.1111/1755-0998.12137  1
2013 Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat B, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O'Donohue M. Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnology For Biofuels. 6: 78. PMID 23672637 DOI: 10.1186/1754-6834-6-78  1
2013 Bourret V, Croville G, Mariette J, Klopp C, Bouchez O, Tiley L, Guérin JL. Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 18: 31-41. PMID 23660486 DOI: 10.1016/J.Meegid.2013.04.034  1
2013 Romano A, Trip H, Campbell-Sills H, Bouchez O, Sherman D, Lolkema JS, Lucas PM. Genome Sequence of Lactobacillus saerimneri 30a (Formerly Lactobacillus sp. Strain 30a), a Reference Lactic Acid Bacterium Strain Producing Biogenic Amines. Genome Announcements. 1. PMID 23405290 DOI: 10.1128/genomeA.00097-12  1
2013 Castro R, Jouneau L, Pham HP, Bouchez O, Giudicelli V, Lefranc MP, Quillet E, Benmansour A, Cazals F, Six A, Fillatreau S, Sunyer O, Boudinot P. Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection. Plos Pathogens. 9: e1003098. PMID 23326228 DOI: 10.1371/journal.ppat.1003098  1
2013 Zened A, Combes S, Cauquil L, Mariette J, Klopp C, Bouchez O, Troegeler-Meynadier A, Enjalbert F. Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. Fems Microbiology Ecology. 83: 504-14. PMID 22974422 DOI: 10.1111/1574-6941.12011  1
2012 Capitan A, Allais-Bonnet A, Pinton A, Marquant-Le Guienne B, Le Bourhis D, Grohs C, Bouet S, Clément L, Salas-Cortes L, Venot E, Chaffaux S, Weiss B, Delpeuch A, Noé G, Rossignol MN, ... ... Bouchez O, et al. A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull. Plos One. 7: e49084. PMID 23152852 DOI: 10.1371/journal.pone.0049084  1
2012 Frésard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, et al. Fine mapping of complex traits in non-model species: Using next generation sequencing and advanced intercross lines in Japanese quail Bmc Genomics. 13. PMID 23066875 DOI: 10.1186/1471-2164-13-551  1
2012 Formey D, Molès M, Haouy A, Savelli B, Bouchez O, Bécard G, Roux C. Comparative analysis of mitochondrial genomes of Rhizophagus irregularis - syn. Glomus irregulare - reveals a polymorphism induced by variability generating elements. The New Phytologist. 196: 1217-27. PMID 22967288 DOI: 10.1111/j.1469-8137.2012.04283.x  0.01
2012 Bouétard A, Noirot C, Besnard AL, Bouchez O, Choisne D, Robe E, Klopp C, Lagadic L, Coutellec MA. Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress. Ecotoxicology (London, England). 21: 2222-34. PMID 22814884 DOI: 10.1007/s10646-012-0977-1  1
2012 Yano A, Guyomard R, Nicol B, Jouanno E, Quillet E, Klopp C, Cabau C, Bouchez O, Fostier A, Guiguen Y. An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss. Current Biology : Cb. 22: 1423-8. PMID 22727696 DOI: 10.1016/j.cub.2012.05.045  1
2012 Croville G, Soubies SM, Barbieri J, Klopp C, Mariette J, Bouchez O, Camus-Bouclainville C, Guérin JL. Field monitoring of avian influenza viruses: whole-genome sequencing and tracking of neuraminidase evolution using 454 pyrosequencing. Journal of Clinical Microbiology. 50: 2881-7. PMID 22718944 DOI: 10.1128/JCM.01142-12  1
2012 Le Cam A, Bobe J, Bouchez O, Cabau C, Kah O, Klopp C, Lareyre JJ, Le Guen I, Lluch J, Montfort J, Moreews F, Nicol B, Prunet P, Rescan PY, Servili A, et al. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Gene. 500: 32-9. PMID 22465513 DOI: 10.1016/j.gene.2012.03.053  1
2012 Carrier G, Le Cunff L, Dereeper A, Legrand D, Sabot F, Bouchez O, Audeguin L, Boursiquot JM, This P. Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L. Plos One. 7: e32973. PMID 22427919 DOI: 10.1371/journal.pone.0032973  0.01
2012 Serino M, Luche E, Gres S, Baylac A, Bergé M, Cenac C, Waget A, Klopp P, Iacovoni J, Klopp C, Mariette J, Bouchez O, Lluch J, Ouarné F, Monsan P, et al. Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Gut. 61: 543-53. PMID 22110050 DOI: 10.1136/Gutjnl-2011-301012  1
2012 van der Aa LM, Jouneau L, Laplantine E, Bouchez O, Van Kemenade L, Boudinot P. FinTRIMs, fish virus-inducible proteins with E3 ubiquitin ligase activity. Developmental and Comparative Immunology. 36: 433-41. PMID 21907235 DOI: 10.1016/j.dci.2011.08.010  1
2011 Amar J, Serino M, Lange C, Chabo C, Iacovoni J, Mondot S, Lepage P, Klopp C, Mariette J, Bouchez O, Perez L, Courtney M, Marre M, Klopp P, Lantieri O, et al. Involvement of tissue bacteria in the onset of diabetes in humans: Evidence for a concept Diabetologia. 54: 3055-3061. PMID 21976140 DOI: 10.1007/s00125-011-2329-8  1
2010 Leroux S, Feve K, Vignoles F, Bouchez O, Klopp C, Noirot C, Gourichon D, Richard S, Leterrier C, Beaumont C, Minvielle F, Vignal A, Pitel F. Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing. Bmc Research Notes. 3: 214. PMID 20667075 DOI: 10.1186/1756-0500-3-214  1
2010 Leroux S, Feve K, Vignoles F, Bouchez O, Klopp C, Noirot C, Gourichon D, Richard S, Leterrier C, Beaumont C, Minvielle F, Vignal A, Pitel F. Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencing Bmc Research Notes. 3. DOI: 10.1186/1756-0500-3-214  1
2007 Bouchez O, Huard C, Lorrain S, Roby D, Balagué C. Ethylene is one of the key elements for cell death and defense response control in the Arabidopsis lesion mimic mutant vad1. Plant Physiology. 145: 465-77. PMID 17720753 DOI: 10.1104/Pp.107.106302  1
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