Olivier Bouchez - Related publications

Toulouse 3 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection. Nature Microbiology. 6: 1526-1536. PMID 34819642 DOI: 10.1038/s41564-021-00993-x   
2021 Ke F, Vasseur L, Yi H, Yang L, Wei X, Wang B, Kang M. Gene flow, linked selection, and divergent sorting of ancient polymorphism shape genomic divergence landscape in a group of edaphic specialists. Molecular Ecology. PMID 34664755 DOI: 10.1111/mec.16226   
2021 Tang M, He S, Gong X, Lü P, Taha RH, Chen K. High-Quality Chromosome-Level Genome Assembly of a Single With Resistance by a Combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. Frontiers in Genetics. 12: 718266. PMID 34603381 DOI: 10.3389/fgene.2021.718266   
2021 Caicedo-Montoya C, Manzo-Ruiz M, Ríos-Estepa R. Pan-Genome of the Genus and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. Frontiers in Microbiology. 12: 677558. PMID 34659136 DOI: 10.3389/fmicb.2021.677558   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Pellicer J, Fernández P, Fay MF, Michálková E, Leitch IJ. Genome Size Doubling Arises From the Differential Repetitive DNA Dynamics in the Genus (Melanthiaceae). Frontiers in Genetics. 12: 726211. PMID 34552621 DOI: 10.3389/fgene.2021.726211   
2021 Sun J, Wang Y, Garran TA, Qiao P, Wang M, Yuan Q, Guo L, Huang L. Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Based on Chloroplast Genome Resources. Frontiers in Genetics. 12: 721022. PMID 34603384 DOI: 10.3389/fgene.2021.721022   
2021 Liang Q, Liu C, Xu R, Song M, Zhou Z, Li H, Dai W, Yang M, Yu Y, Chen H. fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing. Frontiers in Microbiology. 12: 723577. PMID 34733246 DOI: 10.3389/fmicb.2021.723577   
2021 Bian PP, Zhang Y, Jiang Y. Pan-genome: setting a new standard for high-quality reference genomes. Yi Chuan = Hereditas. 43: 1023-1037. PMID 34815206 DOI: 10.16288/j.yczz.21-214   
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Lu W, Pei Z, Zang M, Lee YK, Zhao J, Chen W, Wang H, Zhang H. Comparative Genomic Analysis of Strains Isolated from Different Niches. Genes. 12. PMID 34680899 DOI: 10.3390/genes12101504   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 Wang B, Peng H, Wu W, Yang B, Chen Y, Xu F, Peng Y, Qin Y, Fu P, Lu J. Genomic insights into biocontrol potential of LJBS06. 3 Biotech. 11: 458. PMID 34692367 DOI: 10.1007/s13205-021-03000-6   
2021 Yi S, Xu T, Song X, Wang W, Wang G, Yu W, Han B. The complete chloroplast genome of Engler and its phylogenetic analysis in the family Araceae. Mitochondrial Dna. Part B, Resources. 6: 3283-3285. PMID 34712813 DOI: 10.1080/23802359.2021.1993107   
2021 Sharma R, Cockram J, Gardner KA, Russell J, Ramsay L, Thomas WTB, O'Sullivan DM, Powell W, Mackay IJ. Trends of genetic changes uncovered by Env- and Eigen-GWAS in wheat and barley. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34778903 DOI: 10.1007/s00122-021-03991-z   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Lan L, Shi P, Song H, Tang X, Zhou J, Yang J, Yang M, Xu J. De Novo Genome Assembly of Chinese Plateau Honeybee Unravels Intraspecies Genetic Diversity in the Eastern Honeybee, . Insects. 12. PMID 34680661 DOI: 10.3390/insects12100891   
2021 Chakraborty A, Mahajan S, Jaiswal SK, Sharma VK. Genome sequencing of turmeric provides evolutionary insights into its medicinal properties. Communications Biology. 4: 1193. PMID 34654884 DOI: 10.1038/s42003-021-02720-y   
2021 Li R, Wang X, Bian C, Gao Z, Zhang Y, Jiang W, Wang M, You X, Cheng L, Pan X, Yang J, Shi Q. Whole-Genome Sequencing of Reveals Phylogenetic Evolution and Immunological Variances in Various Fishes. Frontiers in Genetics. 12: 736500. PMID 34675964 DOI: 10.3389/fgene.2021.736500   
2021 Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139   
2021 Shekhovtsov SV, Efremov YR, Poluboyarova TV, Peltek SE. Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida). Vavilovskii Zhurnal Genetiki I Selektsii. 25: 647-651. PMID 34782884 DOI: 10.18699/VJ21.073   
2021 Denoyelle L, de Villemereuil P, Boyer F, Khelifi M, Gaffet C, Alberto F, Benjelloun B, Pompanon F. Genetic Variations and Differential DNA Methylation to Face Contrasted Climates in Small Ruminants: An Analysis on Traditionally-Managed Sheep and Goats. Frontiers in Genetics. 12: 745284. PMID 34650601 DOI: 10.3389/fgene.2021.745284   
2021 Yu Z, Zhang W, Fu H, Zou X, Zhao M, Liang S, Gu C, Yang Q, He M, Xiao Q, Xiao W, He L, Lü M. Genomic analysis of Poxviridae and exploring qualified gene sequences for phylogenetics. Computational and Structural Biotechnology Journal. 19: 5479-5486. PMID 34712393 DOI: 10.1016/j.csbj.2021.09.031   
2021 Ma B, Wang X, Lei C, Tang Y, He J, Gao Y, Zhang Y, Wang H. Identification of Three Novel PmGRI1 Genomic Resistance Islands and One Multidrug Resistant Hybrid Structure of Tn-like Transposon and PmGRI1 in . Antibiotics (Basel, Switzerland). 10. PMID 34680847 DOI: 10.3390/antibiotics10101268   
2021 Liu Y, Pei T, Yi S, Du J, Zhang X, Deng X, Yao Q, Deng MR, Zhu H. Phylogenomic Analysis Substantiates the Gene as a Powerful Molecular Marker to Efficiently Differentiate the Most Closely Related Genera , , and . Frontiers in Microbiology. 12: 763359. PMID 34707598 DOI: 10.3389/fmicb.2021.763359   
2021 Kiran K, Rawal HC, Dubey H, Jaswal R, Bhardwaj SC, Deshmukh R, Sharma TR. Genome-Wide Analysis of Four Pathotypes of Wheat Rust Pathogen () Reveals Structural Variations and Diversifying Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34575739 DOI: 10.3390/jof7090701   
2021 Guo Y, Yao B, Da W, Du F, Yuan M, Li J. The complete chloroplast genome and phylogenetic analysis of Bunge ex Lehm. Mitochondrial Dna. Part B, Resources. 6: 3250-3252. PMID 34693013 DOI: 10.1080/23802359.2021.1991244   
2021 Guo Y, Yao B, Da W, Du F, Yuan M, Li J. The complete chloroplast genome and phylogenetic analysis of Bunge ex Lehm. Mitochondrial Dna. Part B, Resources. 6: 3250-3252. PMID 34693013 DOI: 10.1080/23802359.2021.1991244   
2021 Gompert Z, Feder JL, Nosil P. Natural selection drives genome-wide evolution via chance genetic associations. Molecular Ecology. PMID 34704650 DOI: 10.1111/mec.16247   
2021 Ramakrishnan M, Satish L, Kalendar R, Narayanan M, Kandasamy S, Sharma A, Emamverdian A, Wei Q, Zhou M. The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation. International Journal of Molecular Sciences. 22. PMID 34768817 DOI: 10.3390/ijms222111387   
2021 Ma H, Jiang J, He J, Huifang L, Han L, Gong Y, Li B, Zonggang Y, Shengguo T, Zhang Y, Duan Y, Yin Y, Zeng Q, Yi J, Xinglong H, et al. Long-read assembly of the Chinese indigenous Ningxiang pig genome and identification of genetic variations in fat metabolism among different breeds. Molecular Ecology Resources. PMID 34758184 DOI: 10.1111/1755-0998.13550   
2021 García-Galán A, Baranowski E, Hygonenq MC, Walch M, Croville G, Citti C, De la Fe C, Nouvel LX. Genome mosaicism in field strains of as footprints of in-host horizontal chromosomal transfer. Applied and Environmental Microbiology. AEM0166121. PMID 34669423 DOI: 10.1128/AEM.01661-21   
2021 Wu H, Hu Q, Ai F, Zhang J, Kang M, Lin H, Xu Z, Dong G, Ma T, Liu J. A chromosome-level genome assembly for the wild kiwifruit Actinidia kolomikta provides insights into canker resistance and fruit development. Plant Biotechnology Journal. PMID 34786806 DOI: 10.1111/pbi.13748   
2021 Yang R, Xu Z, Wang Q, Zhu D, Bian C, Ren J, Huang Z, Zhu X, Tian Z, Wang Y, Jiang Z, Zhao Y, Zhang D, Li N, Hu X. Genome‑wide association study and genomic prediction for growth traits in yellow-plumage chicken using genotyping-by-sequencing. Genetics, Selection, Evolution : Gse. 53: 82. PMID 34706641 DOI: 10.1186/s12711-021-00672-9   
2021 Chen J, Chen J, Wang L, Zhao Y, Qin M. The complete chloroplast genome of Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China. Mitochondrial Dna. Part B, Resources. 6: 3098-3099. PMID 34621986 DOI: 10.1080/23802359.2021.1981785   
2021 Huang K, Tang J, Zou Y, Sun X, Lan J, Wang W, Xu P, Wu X, Ma R, Wang Q, Wang Z, Liu J. Whole Genome Sequence of , the Causal Agent of Black Spot of Kiwifruit. Frontiers in Microbiology. 12: 713462. PMID 34616379 DOI: 10.3389/fmicb.2021.713462   
2021 Berger C, Rückert C, Blom J, Rabaey K, Kalinowski J, Rosenbaum MA. Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics. Scientific Reports. 11: 1370. PMID 33446769 DOI: 10.1038/s41598-020-80592-8   
2021 Zhou Y, Zhang H, Ping H, Ding Y, Hu S, Bi G, Li C, Li H, Huang Y, Guo L, Ma X, Xia Z. Characterization of the complete chloroplast genome of (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3406-3408. PMID 34790877 DOI: 10.1080/23802359.2021.2000899   
2021 Wang X, Li LL, Xiao Y, Chen XY, Chen JH, Hu XS. A complete sequence of mitochondrial genome of Neolamarckia cadamba and its use for systematic analysis. Scientific Reports. 11: 21452. PMID 34728739 DOI: 10.1038/s41598-021-01040-9   
2021 Qiao Q, Edger PP, Xue L, Qiong, Lu J, Zhang Y, Cao Q, Yocca AE, Platts AE, Knapp SJ, Van Montagu M, Van de Peer Y, Lei J, Zhang T. Evolutionary history and pan-genome dynamics of strawberry ( spp.). Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34697247 DOI: 10.1073/pnas.2105431118   
2021 Zeng Q, Xie J, Li Y, Gao T, Zhang X, Wang Q. Comprehensive Genomic Analysis of the Endophytic Strain GLB197, a Potential Biocontrol Agent of Grape Downy Mildew. Frontiers in Genetics. 12: 729603. PMID 34646305 DOI: 10.3389/fgene.2021.729603   
2021 Cosentino RO, Brink BG, Siegel TN. Allele-specific assembly of a eukaryotic genome corrects apparent frameshifts and reveals a lack of nonsense-mediated mRNA decay. Nar Genomics and Bioinformatics. 3: lqab082. PMID 34541528 DOI: 10.1093/nargab/lqab082   
2021 Wen G, Chen S, Fan L, Zeng L, Xu B. The complete chloroplast genome of H.S.Lo (Menispermaceae), an important traditional medicine from South China. Mitochondrial Dna. Part B, Resources. 6: 3269-3270. PMID 34712807 DOI: 10.1080/23802359.2021.1993099   
2021 Datta MS, Yelin I, Hochwald O, Kassis I, Borenstein-Levin L, Kugelman A, Kishony R. Rapid methicillin resistance diversification in Staphylococcus epidermidis colonizing human neonates. Nature Communications. 12: 6062. PMID 34663826 DOI: 10.1038/s41467-021-26392-8   
2021 Singh PR, van de Vossenberg B, Rybarczyk-Mydłowska K, Kowalewska-Groszkowska M, Bert W, Karssen G. An integrated approach for synonymization of with (Nematoda: Hoplolaimidae) reveals high intraspecific mitogenomic variation. Phytopathology. PMID 34818905 DOI: 10.1094/PHYTO-08-21-0363-R   
2021 Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121   
2021 Chatterjee N, Zhang X. CRISPR approach in environmental chemical screening focusing on population variability. The Journal of Toxicological Sciences. 46: 499-507. PMID 34719552 DOI: 10.2131/jts.46.499   
2021 Zhou Q, Jiao L, Li W, Hu Z, Li Y, Zhang H, Yang M, Xu L, Yan Y. A Novel Cre/-Based Genetic Tool for Repeated, Targeted and Markerless Gene Integration in . International Journal of Molecular Sciences. 22. PMID 34639080 DOI: 10.3390/ijms221910739   
2021 Wang Y, Niu Y, Qiang Z, Tian Y, Li Y. The complete chloroplast genome of (Rosaceae), a medicinal plant found in northwest China. Mitochondrial Dna. Part B, Resources. 6: 3057-3058. PMID 34589590 DOI: 10.1080/23802359.2021.1978892