| Year |
Citation |
Score |
| 2024 |
Hermosilla-Albala N, Silva FE, Cuadros-Espinoza S, Fontsere C, Valenzuela-Seba A, Pawar H, Gut M, Kelley JL, Ruibal-Puertas S, Alentorn-Moron P, Faella A, Lizano E, Farias I, Hrbek T, Valsecchi J, ... ... Marques-Bonet T, et al. Whole genomes of Amazonian uakari monkeys reveal complex connectivity and fast differentiation driven by high environmental dynamism. Communications Biology. 7: 1283. PMID 39379612 DOI: 10.1038/s42003-024-06901-3 |
0.469 |
|
| 2024 |
Zhang L, Leonard N, Passaro R, Luan MS, Van Tuyen P, Han LTN, Cam NH, Vogelnest L, Lynch M, Fine AE, Nga NTT, Van Long N, Rawson BM, Behie A, Van Nguyen T, ... ... Marques-Bonet T, et al. Genomic adaptation to small population size and saltwater consumption in the critically endangered Cat Ba langur. Nature Communications. 15: 8531. PMID 39358348 DOI: 10.1038/s41467-024-52811-7 |
0.434 |
|
| 2024 |
Ostridge HJ, Fontsere C, Lizano E, Soto DC, Schmidt JM, Saxena V, Alvarez-Estape M, Barratt CD, Gratton P, Bocksberger G, Lester JD, Dieguez P, Agbor A, Angedakin S, Assumang AK, ... ... Marques-Bonet T, et al. Local genetic adaptation to habitat in wild chimpanzees. Biorxiv : the Preprint Server For Biology. PMID 39026872 DOI: 10.1101/2024.07.09.601734 |
0.566 |
|
| 2024 |
Corominas M, Marquès-Bonet T, Arnedo MA, Bayés M, Belmonte J, Escrivà H, Fernández R, Gabaldón T, Garnatje T, Germain J, Niell M, Palero F, Pons J, Puigdomènech P, Initiative For The Earth BioGenome Project TC, et al. The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics. Nar Genomics and Bioinformatics. 6: lqae075. PMID 39022326 DOI: 10.1093/nargab/lqae075 |
0.397 |
|
| 2024 |
Wirthlin ME, Schmid TA, Elie JE, Zhang X, Kowalczyk A, Redlich R, Shvareva VA, Rakuljic A, Ji MB, Bhat NS, Kaplow IM, Schäffer DE, Lawler AJ, Wang AZ, Phan BN, ... ... Marques-Bonet T, et al. Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements. Science (New York, N.Y.). eabn3263. PMID 38422184 DOI: 10.1126/science.abn3263 |
0.518 |
|
| 2024 |
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Antunes A, Balacco JR, Chaisson MJP, Cheng H, Collins J, ... ... Marques-Bonet T, et al. Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology. PMID 38278971 DOI: 10.1038/s41587-023-02100-3 |
0.671 |
|
| 2023 |
Talavera A, Palmada-Flores M, Burriel-Carranza B, Valbuena-Ureña E, Mochales-Riaño G, Adams DC, Tejero-Cicuéndez H, Soler-Membrives A, Amat F, Guinart D, Carbonell F, Obon E, Marquès-Bonet T, Carranza S. Genomic insights into the Montseny brook newt (), a Critically Endangered glacial relict. Iscience. 27: 108665. PMID 38226169 DOI: 10.1016/j.isci.2023.108665 |
0.48 |
|
| 2023 |
Jensen A, Swift F, de Vries D, Beck R, Kuderna LFK, Knauf S, Chuma IS, Keyyu JD, Kitchener AC, Farh K, Rogers J, Marques-Bonet T, Detwiler KM, Roos C, Guschanski K. Complex evolutionary history with extensive ancestral gene flow in an African primate radiation. Molecular Biology and Evolution. PMID 37987553 DOI: 10.1093/molbev/msad247 |
0.423 |
|
| 2023 |
Yee SW, Ferrández-Peral L, Alentorn P, Fontsere C, Ceylan M, Koleske ML, Handin N, Artegoitia VM, Lara G, Chien HC, Zhou X, Dainat J, Zalevsky A, Sali A, Brand CM, ... ... Marques-Bonet T, et al. Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates. Research Square. PMID 37790518 DOI: 10.21203/rs.3.rs-3263845/v1 |
0.308 |
|
| 2023 |
Yee SW, Ferrández-Peral L, Alentorn P, Fontsere C, Ceylan M, Koleske ML, Handin N, Artegoitia VM, Lara G, Chien HC, Zhou X, Dainat J, Zalevsky A, Sali A, Brand CM, ... ... Marques-Bonet T, et al. Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates. Biorxiv : the Preprint Server For Biology. PMID 37609337 DOI: 10.1101/2023.08.08.552553 |
0.308 |
|
| 2023 |
Mochales-Riaño G, Fontsere C, de Manuel M, Talavera A, Burriel-Carranza B, Tejero-Cicuéndez H, AlGethami RHM, Shobrak M, Marques-Bonet T, Carranza S. Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (). Iscience. 26: 107481. PMID 37601769 DOI: 10.1016/j.isci.2023.107481 |
0.461 |
|
| 2023 |
Sánchez-Barreiro F, De Cahsan B, Westbury MV, Sun X, Margaryan A, Fontsere C, Bruford MW, Russo IM, Kalthoff DC, Sicheritz-Pontén T, Petersen B, Dalén L, Zhang G, Marquès-Bonet T, Gilbert MTP, et al. Historic sampling of a vanishing beast: population structure and diversity in the black rhinoceros. Molecular Biology and Evolution. PMID 37561011 DOI: 10.1093/molbev/msad180 |
0.368 |
|
| 2023 |
Pawar H, Rymbekova A, Cuadros-Espinoza S, Huang X, de Manuel M, van der Valk T, Lobon I, Alvarez-Estape M, Haber M, Dolgova O, Han S, Esteller-Cucala P, Juan D, Ayub Q, Bautista R, ... ... Marques-Bonet T, et al. Ghost admixture in eastern gorillas. Nature Ecology & Evolution. PMID 37500909 DOI: 10.1038/s41559-023-02145-2 |
0.484 |
|
| 2023 |
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, ... ... Marques-Bonet T, et al. Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy. Biorxiv : the Preprint Server For Biology. PMID 37425881 DOI: 10.1101/2023.06.28.546576 |
0.712 |
|
| 2023 |
Urban L, Perlas A, Francino O, Martí-Carreras J, Muga BA, Mwangi JW, Boykin Okalebo L, Stanton JL, Black A, Waipara N, Fontsere C, Eccles D, Urel H, Reska T, Morales HE, ... ... Marques-Bonet T, et al. Real-time genomics for One Health. Molecular Systems Biology. e11686. PMID 37325891 DOI: 10.15252/msb.202311686 |
0.337 |
|
| 2023 |
Esteller-Cucala P, Palmada-Flores M, Kuderna LFK, Fontsere C, Serres-Armero A, Dabad M, Torralvo M, Faella A, Ferrández-Peral L, Llovera L, Fornas O, Julià E, Ramírez E, González I, Hecht J, et al. Y chromosome sequence and epigenomic reconstruction across human populations. Communications Biology. 6: 623. PMID 37296226 DOI: 10.1038/s42003-023-05004-9 |
0.468 |
|
| 2023 |
Zhou Y, Zhan X, Jin J, Zhou L, Bergman J, Li X, Rousselle MMC, Belles MR, Zhao L, Fang M, Chen J, Fang Q, Kuderna L, Marques-Bonet T, Kitayama H, et al. Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution. PMID 37268856 DOI: 10.1038/s41559-022-01974-x |
0.317 |
|
| 2023 |
Zhang BL, Chen W, Wang Z, Pang W, Luo MT, Wang S, Shao Y, He WQ, Deng Y, Zhou L, Chen J, Yang MM, Wu Y, Wang L, Fernández-Bellon H, ... ... Marques-Bonet T, et al. Comparative genomics reveals the hybrid origin of a macaque group. Science Advances. 9: eadd3580. PMID 37262187 DOI: 10.1126/sciadv.add3580 |
0.348 |
|
| 2023 |
Shao Y, Zhou L, Li F, Zhao L, Zhang BL, Shao F, Chen JW, Chen CY, Bi X, Zhuang XL, Zhu HL, Hu J, Sun Z, Li X, Wang D, ... ... Marques-Bonet T, et al. Phylogenomic analyses provide insights into primate evolution. Science (New York, N.Y.). 380: 913-924. PMID 37262173 DOI: 10.1126/science.abn6919 |
0.528 |
|
| 2023 |
Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD, Fiziev PP, Kuderna LFK, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, ... ... Marques-Bonet T, et al. The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.). 380: eabn8153. PMID 37262156 DOI: 10.1126/science.abn8197 |
0.669 |
|
| 2023 |
Sørensen EF, Harris RA, Zhang L, Raveendran M, Kuderna LFK, Walker JA, Storer JM, Kuhlwilm M, Fontsere C, Seshadri L, Bergey CM, Burrell AS, Bergman J, Phillips-Conroy JE, Shiferaw F, ... ... Marques-Bonet T, et al. Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science (New York, N.Y.). 380: eabn8153. PMID 37262153 DOI: 10.1126/science.abn8153 |
0.449 |
|
| 2023 |
Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich A, Fiziev P, Kuderna L, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, ... ... Marques-Bonet T, et al. The landscape of tolerated genetic variation in humans and primates. Biorxiv : the Preprint Server For Biology. PMID 37205491 DOI: 10.1101/2023.05.01.538953 |
0.671 |
|
| 2023 |
Sørensen EF, Harris RA, Zhang L, Raveendran M, Kuderna LFK, Walker JA, Storer JM, Kuhlwilm M, Fontsere C, Seshadri L, Bergey CM, Burrell AS, Bergmann J, Phillips-Conroy JE, Shiferaw F, ... ... Marques-Bonet T, et al. Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Biorxiv : the Preprint Server For Biology. PMID 37205419 DOI: 10.1101/2023.05.02.539112 |
0.436 |
|
| 2023 |
Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, ... ... Marques-Bonet T, ... ... Marques-Bonet T, et al. Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.). 380: eabn3943. PMID 37104599 DOI: 10.1126/science.abn3943 |
0.704 |
|
| 2023 |
Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK, ... ... Marques-Bonet T, et al. The contribution of historical processes to contemporary extinction risk in placental mammals. Science (New York, N.Y.). 380: eabn5856. PMID 37104572 DOI: 10.1126/science.abn5856 |
0.378 |
|
| 2023 |
Alvarez-Estape M, Pawar H, Fontsere C, Trujillo AE, Gunson JL, Bergl RA, Bermejo M, Linder JM, McFarland K, Oates JF, Sunderland-Groves JL, Orkin J, Higham JP, Viaud-Martinez KA, Lizano E, ... Marques-Bonet T, et al. Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs. Genes. 14. PMID 36981014 DOI: 10.3390/genes14030743 |
0.413 |
|
| 2023 |
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, ... ... Marques-Bonet T, et al. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201076120. PMID 36749728 DOI: 10.1073/pnas.2201076120 |
0.449 |
|
| 2023 |
Juan D, Santpere G, Kelley JL, Cornejo OE, Marques-Bonet T. Current advances in primate genomics: novel approaches for understanding evolution and disease. Nature Reviews. Genetics. PMID 36599936 DOI: 10.1038/s41576-022-00554-w |
0.467 |
|
| 2022 |
Murat F, Mbengue N, Winge SB, Trefzer T, Leushkin E, Sepp M, Cardoso-Moreira M, Schmidt J, Schneider C, Mößinger K, Brüning T, Lamanna F, Belles MR, Conrad C, Kondova I, ... ... Marques-Bonet T, et al. The molecular evolution of spermatogenesis across mammals. Nature. PMID 36544022 DOI: 10.1038/s41586-022-05547-7 |
0.316 |
|
| 2022 |
Gopalakrishnan S, Ebenesersdóttir SS, Lundstrøm IKC, Turner-Walker G, Moore KHS, Luisi P, Margaryan A, Martin MD, Ellegaard MR, Magnússon ÓÞ, Sigurðsson Á, Snorradóttir S, Magnúsdóttir DN, Laffoon JE, van Dorp L, ... ... Marques-Bonet T, et al. The population genomic legacy of the second plague pandemic. Current Biology : Cb. PMID 36182700 DOI: 10.1016/j.cub.2022.09.023 |
0.488 |
|
| 2022 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Marques-Bonet T, et al. Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature. PMID 35962045 DOI: 10.1038/s41586-022-04799-7 |
0.824 |
|
| 2022 |
Bae T, Fasching L, Wang Y, Shin JH, Suvakov M, Jang Y, Norton S, Dias C, Mariani J, Jourdon A, Wu F, Panda A, Pattni R, Chahine Y, Yeh R, ... ... Marques-Bonet T, et al. Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability. Science (New York, N.Y.). 377: 511-517. PMID 35901164 DOI: 10.1126/science.abm6222 |
0.53 |
|
| 2022 |
Paez S, Kraus RHS, Shapiro B, Gilbert MTP, Jarvis ED, Al-Ajli FO, Ceballos G, Crawford AJ, Fedrigo O, Johnson RN, Johnson WE, Marques-Bonet T, Morin PA, Mueller RC, Ryder OA, et al. Reference genomes for conservation. Science (New York, N.Y.). 377: 364-366. PMID 35862547 DOI: 10.1126/science.abm8127 |
0.414 |
|
| 2022 |
Ferrandez-Peral L, Zhan X, Alvarez-Estape M, Chiva C, Esteller-Cucala P, Garcia-Perez R, Julia E, Lizano E, Fornas O, Sabido E, Li Q, Marques-Bonet T, Juan D, Zhang G. Transcriptome innovations in primates revealed by single-molecule long-read sequencing. Genome Research. PMID 35840341 DOI: 10.1101/gr.276395.121 |
0.411 |
|
| 2022 |
Fontsere C, Kuhlwilm M, Morcillo-Suarez C, Alvarez-Estape M, Lester JD, Gratton P, Schmidt JM, Dieguez P, Aebischer T, Álvarez-Varona P, Agbor A, Angedakin S, Assumang AK, Ayimisin EA, Bailey E, ... ... Marques-Bonet T, et al. Population dynamics and genetic connectivity in recent chimpanzee history. Cell Genomics. 2: None. PMID 35711737 DOI: 10.1016/j.xgen.2022.100133 |
0.364 |
|
| 2022 |
Alvarez-Estape M, Fontsere C, Serres-Armero A, Kuderna LFK, Dobrynin P, Guidara H, Pukazhenthi BS, Koepfli KP, Marques-Bonet T, Moreno E, Lizano E. Insights from the rescue and breeding management of Cuvier's gazelle () through whole-genome sequencing. Evolutionary Applications. 15: 351-364. PMID 35386395 DOI: 10.1111/eva.13336 |
0.438 |
|
| 2022 |
Palmada-Flores M, Orkin JD, Haase B, Mountcastle J, Bertelsen MF, Fedrigo O, Kuderna LFK, Jarvis ED, Marques-Bonet T. A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta). Gigascience. 11. PMID 35365833 DOI: 10.1093/gigascience/giac026 |
0.383 |
|
| 2022 |
Wu DD, Qi XG, Yu L, Li M, Liu ZJ, Yoder AD, Roos C, Hayakawa T, Rogers J, Marques-Bonet T, Su B, Yao YG, Zhang YP, Zhang G. Initiation of the Primate Genome Project. Zoological Research. 43: 147-149. PMID 35008130 DOI: 10.24272/j.issn.2095-8137.2022.001 |
0.326 |
|
| 2021 |
White AE, de-Dios T, Carrión P, Bonora GL, Llovera L, Cilli E, Lizano E, Khabdulina MK, Tleugabulov DT, Olalde I, Marquès-Bonet T, Balloux F, Pettener D, van Dorp L, Luiselli D, et al. Genomic Analysis of 18th-Century Kazakh Individuals and Their Oral Microbiome. Biology. 10. PMID 34943238 DOI: 10.3390/biology10121324 |
0.432 |
|
| 2021 |
Fontsere C, Frandsen P, Hernandez-Rodriguez J, Niemann J, Scharff-Olsen CH, Vallet D, Le Gouar P, Ménard N, Navarro A, Siegismund HR, Hvilsom C, Gilbert MTP, Kuhlwilm M, Hughes D, Marques-Bonet T. The genetic impact of an Ebola outbreak on a wild gorilla population. Bmc Genomics. 22: 735. PMID 34635054 DOI: 10.1186/s12864-021-08025-y |
0.524 |
|
| 2021 |
de-Dios T, Carrión P, Olalde I, Llovera Nadal L, Lizano E, Pàmies D, Marques-Bonet T, Balloux F, van Dorp L, Lalueza-Fox C. from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts. Iscience. 24: 103021. PMID 34527890 DOI: 10.1016/j.isci.2021.103021 |
0.328 |
|
| 2021 |
Liu S, Westbury MV, Dussex N, Mitchell KJ, Sinding MS, Heintzman PD, Duchêne DA, Kapp JD, von Seth J, Heiniger H, Sánchez-Barreiro F, Margaryan A, André-Olsen R, De Cahsan B, Meng G, ... ... Marques-Bonet T, et al. Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell. PMID 34433011 DOI: 10.1016/j.cell.2021.07.032 |
0.449 |
|
| 2021 |
Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, Westbury MV, de Manuel M, Margaryan A, Ciucani MM, Vieira FG, Patramanis Y, Kalthoff DC, Timmons Z, Sicheritz-Pontén T, Dalén L, Ryder OA, Zhang G, et al. Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Molecular Ecology. PMID 34176179 DOI: 10.1111/mec.16043 |
0.475 |
|
| 2021 |
Solís-Moruno M, Mensa-Vilaró A, Batlle-Masó L, Lobón I, Bonet N, Marquès-Bonet T, Aróstegui JI, Casals F. Assessment of the gene mosaicism burden in blood and its implications for immune disorders. Scientific Reports. 11: 12940. PMID 34155260 DOI: 10.1038/s41598-021-92381-y |
0.322 |
|
| 2021 |
García-Pérez R, Esteller-Cucala P, Mas G, Lobón I, Di Carlo V, Riera M, Kuhlwilm M, Navarro A, Blancher A, Di Croce L, Gómez-Skarmeta JL, Juan D, Marquès-Bonet T. Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures. Nature Communications. 12: 3116. PMID 34035253 DOI: 10.1038/s41467-021-23397-1 |
0.65 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Marques-Bonet T, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.76 |
|
| 2021 |
Serres-Armero A, Davis BW, Povolotskaya IS, Morcillo-Suarez C, Plassais J, Juan D, Ostrander EA, Marques-Bonet T. Copy number variation underlies complex phenotypes in domestic dog breeds and other canids. Genome Research. PMID 33863806 DOI: 10.1101/gr.266049.120 |
0.449 |
|
| 2021 |
Melin AD, Orkin JD, Janiak MC, Valenzuela A, Kuderna L, Marrone F, Ramangason H, Horvath JE, Roos C, Kitchener AC, Khor CC, Lim WK, Lee JGH, Tan P, Umapathy G, ... ... Marques-Bonet T, et al. Variation in predicted COVID-19 risk among lemurs and lorises. American Journal of Primatology. e23255. PMID 33792947 DOI: 10.1002/ajp.23255 |
0.582 |
|
| 2021 |
Wang Y, Bae T, Thorpe J, Sherman MA, Jones AG, Cho S, Daily K, Dou Y, Ganz J, Galor A, Lobon I, Pattni R, Rosenbluh C, Tomasi S, Tomasini L, et al. Comprehensive identification of somatic nucleotide variants in human brain tissue. Genome Biology. 22: 92. PMID 33781308 DOI: 10.1186/s13059-021-02285-3 |
0.522 |
|
| 2021 |
Orkin JD, Montague MJ, Tejada-Martinez D, de Manuel M, Del Campo J, Cheves Hernandez S, Di Fiore A, Fontsere C, Hodgson JA, Janiak MC, Kuderna LFK, Lizano E, Martin MP, Niimura Y, Perry GH, et al. The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33574059 DOI: 10.1073/pnas.2010632118 |
0.446 |
|
| 2021 |
Melin AD, Orkin JD, Janiak MC, Valenzuela A, Kuderna L, Marrone F, Ramangason H, Horvath JE, Roos C, Kitchener AC, Khor CC, Lim WK, Lee JGH, Tan P, Umapathy G, ... ... Marques-Bonet T, et al. Variation in predicted COVID-19 risk among lemurs and lorises. Biorxiv : the Preprint Server For Biology. PMID 33564767 DOI: 10.1101/2021.02.03.429540 |
0.584 |
|
| 2020 |
Salgado D, Armean IM, Baudis M, Beltran S, Capella-Gutierrez S, Carvalho-Silva D, Dominguez Del Angel V, Dopazo J, Furlong LI, Gao B, Garcia L, Gerloff D, Gut I, Gyenesei A, Habermann N, ... ... Marques-Bonet T, et al. The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000research. 9. PMID 34367618 DOI: 10.12688/f1000research.24887.1 |
0.388 |
|
| 2020 |
Dayama G, Zhou W, Prado-Martinez J, Marques-Bonet T, Mills RE. Characterization of nuclear mitochondrial insertions in the whole genomes of primates. Nar Genomics and Bioinformatics. 2: lqaa089. PMID 33575633 DOI: 10.1093/nargab/lqaa089 |
0.528 |
|
| 2020 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, ... ... Marques-Bonet T, et al. Author Correction: Elephant shark genome provides unique insights into gnathostome evolution. Nature. PMID 33214712 DOI: 10.1038/s41586-020-2967-4 |
0.359 |
|
| 2020 |
Orkin JD, Kuderna LFK, Marques-Bonet T. The Diversity of Primates: From Biomedicine to Conservation Genomics. Annual Review of Animal Biosciences. PMID 33197208 DOI: 10.1146/annurev-animal-061220-023138 |
0.5 |
|
| 2020 |
Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, ... ... Marques-Bonet T, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051 |
0.441 |
|
| 2020 |
Chicote JU, López-Sánchez M, Marquès-Bonet T, Callizo J, Pérez-Jurado LA, García-España A. Circular DNA intermediates in the generation of large human segmental duplications. Bmc Genomics. 21: 593. PMID 32847497 DOI: 10.1186/S12864-020-06998-W |
0.571 |
|
| 2020 |
Kuderna LF, Esteller-Cucala P, Marques-Bonet T. Branching out: what omics can tell us about primate evolution. Current Opinion in Genetics & Development. 62: 65-71. PMID 32634683 DOI: 10.1016/J.Gde.2020.06.006 |
0.567 |
|
| 2020 |
Sinding MS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, ... ... Marques-Bonet T, et al. Arctic-adapted dogs emerged at the Pleistocene-Holocene transition. Science (New York, N.Y.). 368: 1495-1499. PMID 32587022 DOI: 10.1126/Science.Aaz8599 |
0.437 |
|
| 2020 |
Khan N, de Manuel M, Peyregne S, Do R, Prufer K, Marques-Bonet T, Varki N, Gagneux P, Varki A. Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins. Genome Biology and Evolution. PMID 32556248 DOI: 10.1093/Gbe/Evaa125 |
0.519 |
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| 2020 |
Heredia-Genestar JM, Marquès-Bonet T, Juan D, Navarro A. Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations. Nature Communications. 11: 2512. PMID 32427823 DOI: 10.1038/S41467-020-16296-4 |
0.621 |
|
| 2020 |
Brasó-Vives M, Povolotskaya IS, Hartasánchez DA, Farré X, Fernandez-Callejo M, Raveendran M, Harris RA, Rosene DL, Lorente-Galdos B, Navarro A, Marques-Bonet T, Rogers J, Juan D. Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta). Plos Genetics. 16: e1008742. PMID 32392208 DOI: 10.1371/Journal.Pgen.1008742 |
0.743 |
|
| 2020 |
de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Garrett Vieira F, Zepeda Mendoza ML, Liu S, Martin MD, Sinding MS, Mak SST, Carøe C, Liu S, Guo C, Zheng J, Zazula G, ... ... Marques-Bonet T, et al. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366643 DOI: 10.1073/Pnas.1919423117 |
0.463 |
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| 2020 |
Frandsen P, Fontsere C, Nielsen SV, Hanghøj K, Castejon-Fernandez N, Lizano E, Hughes D, Hernandez-Rodriguez J, Korneliussen TS, Carlsen F, Siegismund HR, Mailund T, Marques-Bonet T, Hvilsom C. Targeted conservation genetics of the endangered chimpanzee. Heredity. PMID 32346130 DOI: 10.1038/S41437-020-0313-0 |
0.402 |
|
| 2020 |
Dehasque M, Ávila-Arcos MC, Díez-Del-Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas AS, Marques-Bonet T, Martin MD, Murray GGR, Papadopulos AST, Therkildsen NO, Wegmann D, Dalén L, Foote AD. Inference of natural selection from ancient DNA. Evolution Letters. 4: 94-108. PMID 32313686 DOI: 10.1002/evl3.165 |
0.33 |
|
| 2020 |
Welker F, Ramos-Madrigal J, Gutenbrunner P, Mackie M, Tiwary S, Rakownikow Jersie-Christensen R, Chiva C, Dickinson MR, Kuhlwilm M, de Manuel M, Gelabert P, Martinón-Torres M, Margvelashvili A, Arsuaga JL, Carbonell E, ... Marques-Bonet T, et al. The dental proteome of Homo antecessor. Nature. 580: 235-238. PMID 32269345 DOI: 10.1038/S41586-020-2153-8 |
0.338 |
|
| 2020 |
Batlle-Masó L, Mensa-Vilaró A, Solís-Moruno M, Marquès-Bonet T, Arostegui JI, Casals F. Genetic diagnosis of autoinflammatory disease patients using clinical exome sequencing. European Journal of Medical Genetics. 103920. PMID 32222431 DOI: 10.1016/J.Ejmg.2020.103920 |
0.356 |
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| 2020 |
Gokhman D, Nissim-Rafinia M, Agranat-Tamir L, Housman G, García-Pérez R, Lizano E, Cheronet O, Mallick S, Nieves-Colón MA, Li H, Alpaslan-Roodenberg S, Novak M, Gu H, Osinski JM, Ferrando-Bernal M, ... ... Marques-Bonet T, et al. Differential DNA methylation of vocal and facial anatomy genes in modern humans. Nature Communications. 11: 1189. PMID 32132541 DOI: 10.1038/S41467-020-15020-6 |
0.39 |
|
| 2020 |
De-Dios T, van Dorp L, Charlier P, Morfopoulou S, Lizano E, Bon C, Le Bitouzé C, Alvarez-Estape M, Marquès-Bonet T, Balloux F, Lalueza-Fox C. Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793). Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104209. PMID 32004756 DOI: 10.1016/J.Meegid.2020.104209 |
0.387 |
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| 2020 |
Blake LE, Roux J, Hernando-Herraez I, Banovich N, Garcia Perez R, Hsiao CJ, Eres I, Cuevas C, Marques-Bonet T, Gilad Y. A comparison of gene expression and DNA methylation patterns across tissues and species. Genome Research. PMID 31953346 DOI: 10.1101/Gr.254904.119 |
0.371 |
|
| 2019 |
Kuderna LFK, Solís-Moruno M, Batlle-Masó L, Julià E, Lizano E, Anglada R, Ramírez E, Bote A, Tormo M, Marquès-Bonet T, Fornas Ò, Casals F. Flow Sorting Enrichment and Nanopore Sequencing of Chromosome 1 From a Chinese Individual. Frontiers in Genetics. 10: 1315. PMID 31998370 DOI: 10.3389/Fgene.2019.01315 |
0.479 |
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| 2019 |
Gelabert P, Sandoval-Velasco M, Serres A, de Manuel M, Renom P, Margaryan A, Stiller J, de-Dios T, Fang Q, Feng S, Mañosa S, Pacheco G, Ferrando-Bernal M, Shi G, Hao F, et al. Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Current Biology : Cb. PMID 31839456 DOI: 10.1016/J.Cub.2019.10.066 |
0.706 |
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| 2019 |
Schmidt JM, de Manuel M, Marques-Bonet T, Castellano S, Andrés AM. The impact of genetic adaptation on chimpanzee subspecies differentiation. Plos Genetics. 15: e1008485. PMID 31765391 DOI: 10.1371/Journal.Pgen.1008485 |
0.416 |
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| 2019 |
Welker F, Ramos-Madrigal J, Kuhlwilm M, Liao W, Gutenbrunner P, de Manuel M, Samodova D, Mackie M, Allentoft ME, Bacon AM, Collins MJ, Cox J, Lalueza-Fox C, Olsen JV, Demeter F, ... ... Marques-Bonet T, et al. Enamel proteome shows that Gigantopithecus was an early diverging pongine. Nature. PMID 31723270 DOI: 10.1038/S41586-019-1728-8 |
0.464 |
|
| 2019 |
van Dorp L, Gelabert P, Rieux A, de Manuel M, de-Dios T, Gopalakrishnan S, Carøe C, Sandoval-Velasco M, Fregel R, Olalde I, Escosa R, Aranda C, Huijben S, Mueller I, Marquès-Bonet T, et al. Plasmodium vivax Malaria viewed through the lens of an eradicated European strain. Molecular Biology and Evolution. PMID 31697387 DOI: 10.1093/Molbev/Msz264 |
0.438 |
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| 2019 |
Fontsere C, de Manuel M, Marques-Bonet T, Kuhlwilm M. Admixture in Mammals and How to Understand Its Functional Implications: On the Abundance of Gene Flow in Mammalian Species, Its Impact on the Genome, and Roads into a Functional Understanding. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1900123. PMID 31664727 DOI: 10.1002/bies.201900123 |
0.471 |
|
| 2019 |
Gokhman D, Mishol N, de Manuel M, de Juan D, Shuqrun J, Meshorer E, Marques-Bonet T, Rak Y, Carmel L. Reconstructing Denisovan Anatomy Using DNA Methylation Maps. Cell. 179: 180-192.e10. PMID 31539495 DOI: 10.1016/J.Cell.2019.08.035 |
0.306 |
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| 2019 |
Am M, Hyland EM, Cormican P, Moran RJ, Webb AE, Lee KD, Hernandez J, Prado-Martinez J, Creevey CJ, Aspden JL, McInerney JO, Marques-Bonet T, Mj O. Gene Fusions derived by transcriptional readthrough are Driven by Segmental Duplication in Human. Genome Biology and Evolution. PMID 31400206 DOI: 10.1093/Gbe/Evz163 |
0.459 |
|
| 2019 |
Tollis M, Robbins J, Webb AE, Kuderna LFK, Caulin AF, Garcia JD, Bèrubè M, Pourmand N, Marques-Bonet T, O'Connell MJ, Palsbøll PJ, Maley CC. Return to the sea, get huge, beat cancer: an analysis of cetacean genomes including an assembly for the humpback whale (Megaptera novaeangliae). Molecular Biology and Evolution. PMID 31070747 DOI: 10.1093/Molbev/Msz099 |
0.575 |
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| 2019 |
Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, ... ... Marques-Bonet T, et al. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series. Cell. PMID 31056281 DOI: 10.1016/J.Cell.2019.03.049 |
0.554 |
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| 2019 |
Kuhlwilm M, Han S, Sousa VC, Excoffier L, Marques-Bonet T. Ancient admixture from an extinct ape lineage into bonobos. Nature Ecology & Evolution. PMID 31036897 DOI: 10.1038/S41559-019-0881-7 |
0.569 |
|
| 2019 |
Lorente-Galdos B, Lao O, Serra-Vidal G, Santpere G, Kuderna LFK, Arauna LR, Fadhlaoui-Zid K, Pimenoff VN, Soodyall H, Zalloua P, Marques-Bonet T, Comas D. Whole-genome sequence analysis of a Pan African set of samples reveals archaic gene flow from an extinct basal population of modern humans into sub-Saharan populations. Genome Biology. 20: 77. PMID 31023378 DOI: 10.1186/S13059-019-1684-5 |
0.503 |
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| 2019 |
Besenbacher S, Hvilsom C, Marques-Bonet T, Mailund T, Schierup MH. Author Correction: Direct estimation of mutations in great apes reconciles phylogenetic dating. Nature Ecology & Evolution. PMID 30988499 DOI: 10.1038/S41559-019-0898-Y |
0.347 |
|
| 2019 |
Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Marques-Bonet T, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/Sciadv.Aau6947 |
0.665 |
|
| 2019 |
Han S, Andrés AM, Marques-Bonet T, Kuhlwilm M. Genetic variation in Pan species is shaped by demographic history and harbors lineage-specific functions. Genome Biology and Evolution. PMID 30847478 DOI: 10.1093/Gbe/Evz047 |
0.513 |
|
| 2019 |
Besenbacher S, Hvilsom C, Marques-Bonet T, Mailund T, Schierup MH. Direct estimation of mutations in great apes reconciles phylogenetic dating. Nature Ecology & Evolution. PMID 30664699 DOI: 10.1038/S41559-018-0778-X |
0.346 |
|
| 2019 |
Feng S, Fang Q, Barnett R, Li C, Han S, Kuhlwilm M, Zhou L, Pan H, Deng Y, Chen G, Gamauf A, Woog F, Prys-Jones R, Marques-Bonet T, Gilbert MTP, et al. The Genomic Footprints of the Fall and Recovery of the Crested Ibis. Current Biology : Cb. PMID 30639104 DOI: 10.1016/J.Cub.2018.12.008 |
0.496 |
|
| 2019 |
White LC, Fontsere C, Lizano E, Hughes DA, Angedakin S, Arandjelovic M, Granjon AC, Hans JB, Lester JD, Rabanus-Wallace MT, Rowney C, Städele V, Marques-Bonet T, Langergraber KE, Vigilant L. A roadmap for high-throughput sequencing studies of wild animal populations using non-invasive samples and hybridization capture. Molecular Ecology Resources. PMID 30637963 DOI: 10.1111/1755-0998.12993 |
0.344 |
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| 2019 |
Kuderna LFK, Lizano E, Julià E, Gomez-Garrido J, Serres-Armero A, Kuhlwilm M, Alandes RA, Alvarez-Estape M, Juan D, Simon H, Alioto T, Gut M, Gut I, Schierup MH, Fornas O, ... Marques-Bonet T, et al. Selective single molecule sequencing and assembly of a human Y chromosome of African origin. Nature Communications. 10: 4. PMID 30602775 DOI: 10.1038/S41467-018-07885-5 |
0.529 |
|
| 2018 |
van der Valk T, Díez-Del-Molino D, Marques-Bonet T, Guschanski K, Dalén L. Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas. Current Biology : Cb. PMID 30595519 DOI: 10.1016/J.Cub.2018.11.055 |
0.525 |
|
| 2018 |
Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Imamura Kawasawa Y, Zhao H, et al. Spatiotemporal transcriptomic divergence across human and macaque brain development. Science (New York, N.Y.). 362. PMID 30545855 DOI: 10.1126/Science.Aat8077 |
0.352 |
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| 2018 |
Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, et al. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution. PMID 30510174 DOI: 10.1038/S41559-018-0733-X |
0.567 |
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| 2018 |
Mattle-Greminger MP, Bilgin Sonay T, Nater A, Pybus M, Desai T, de Valles G, Casals F, Scally A, Bertranpetit J, Marques-Bonet T, van Schaik CP, Anisimova M, Krützen M. Genomes reveal marked differences in the adaptive evolution between orangutan species. Genome Biology. 19: 193. PMID 30428903 DOI: 10.1186/S13059-018-1562-6 |
0.503 |
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| 2018 |
Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. PMID 30344120 DOI: 10.1016/J.Cub.2018.08.041 |
0.492 |
|
| 2018 |
Gómez-Sánchez D, Olalde I, Sastre N, Enseñat C, Carrasco R, Marques-Bonet T, Lalueza-Fox C, Leonard JA, Vilà C, Ramírez O. On the path to extinction: inbreeding and admixture in a declining gray wolf population. Molecular Ecology. PMID 30074659 DOI: 10.1111/Mec.14824 |
0.364 |
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| 2018 |
de Valles-Ibáñez G, Esteve-Solé A, Piquer M, González-Navarro EA, Hernandez-Rodriguez J, Laayouni H, González-Roca E, Plaza-Martin AM, Deyà-Martínez Á, Martín-Nalda A, Martínez-Gallo M, García-Prat M, Del Pino-Molina L, Cuscó I, Codina-Solà M, et al. Evaluating the Genetics of Common Variable Immunodeficiency: Monogenetic Model and Beyond. Frontiers in Immunology. 9: 636. PMID 29867916 DOI: 10.3389/Fimmu.2018.00636 |
0.382 |
|
| 2018 |
de Manuel M, Shiina T, Suzuki S, Dereuddre-Bosquet N, Garchon HJ, Tanaka M, Congy-Jolivet N, Aarnink A, Le Grand R, Marques-Bonet T, Blancher A. Whole genome sequencing in the search for genes associated with the control of SIV infection in the Mauritian macaque model. Scientific Reports. 8: 7131. PMID 29739964 DOI: 10.1038/S41598-018-25071-X |
0.459 |
|
| 2018 |
Solis-Moruno M, de Manuel M, Hernandez-Rodriguez J, Fontsere C, Gomara-Castaño A, Valsera-Naranjo C, Crailsheim D, Navarro A, Llorente M, Riera L, Feliu-Olleta O, Marques-Bonet T. Author Correction: Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation. Scientific Reports. 8: 7437. PMID 29728620 DOI: 10.1038/S41598-018-24993-W |
0.618 |
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| 2018 |
Nye J, Laayouni H, Kuhlwilm M, Mondal M, Marques-Bonet T, Bertranpetit J. Selection in the Introgressed Regions of the Chimpanzee Genome. Genome Biology and Evolution. PMID 29635458 DOI: 10.1093/Gbe/Evy077 |
0.472 |
|
| 2018 |
Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, ... ... Marques-Bonet T, et al. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly. Nature Ecology & Evolution. PMID 29434351 DOI: 10.1038/S41559-018-0473-Y |
0.571 |
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| 2017 |
Zhang Z, Gu Q, de Manuel Montero M, Bravo IG, Marques-Bonet T, Häussinger D, Münk C. Stably expressed APOBEC3H forms a barrier for cross-species transmission of simian immunodeficiency virus of chimpanzee to humans. Plos Pathogens. 13: e1006746. PMID 29267382 DOI: 10.1371/Journal.Ppat.1006746 |
0.357 |
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| 2017 |
Serres-Armero A, Povolotskaya IS, Quilez J, Ramirez O, Santpere G, Kuderna LFK, Hernandez-Rodriguez J, Fernandez-Callejo M, Gomez-Sanchez D, Freedman AH, Fan Z, Novembre J, Navarro A, Boyko A, Wayne R, ... ... Marques-Bonet T, et al. Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing. Bmc Genomics. 18: 977. PMID 29258433 DOI: 10.1186/S12864-017-4318-X |
0.732 |
|
| 2017 |
Staes N, Sherwood CC, Wright K, de Manuel M, Guevara EE, Marques-Bonet T, Krützen M, Massiah M, Hopkins WD, Ely JJ, Bradley BJ. FOXP2 variation in great ape populations offers insight into the evolution of communication skills. Scientific Reports. 7: 16866. PMID 29203828 DOI: 10.1038/S41598-017-16844-X |
0.474 |
|
| 2017 |
Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, ... ... Marques-Bonet T, et al. Molecular and cellular reorganization of neural circuits in the human lineage. Science (New York, N.Y.). 358: 1027-1032. PMID 29170230 DOI: 10.1126/Science.Aan3456 |
0.422 |
|
| 2017 |
Nater A, Mattle-Greminger MP, Nurcahyo A, Nowak MG, de Manuel M, Desai T, Groves C, Pybus M, Sonay TB, Roos C, Lameira AR, Wich SA, Askew J, Davila-Ross M, Fredriksson G, ... ... Marques-Bonet T, et al. Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species. Current Biology : Cb. 27: 3576-3577. PMID 29161551 DOI: 10.1016/j.cub.2017.11.020 |
0.328 |
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| 2017 |
Solis-Moruno M, de Manuel M, Hernandez-Rodriguez J, Fontsere C, Gomara-Castaño A, Valsera-Naranjo C, Crailsheim D, Navarro A, Llorente M, Riera L, Feliu-Olleta O, Marques-Bonet T. Potential damaging mutation in LRP5 from genome sequencing of the first reported chimpanzee with the Chiari malformation. Scientific Reports. 7: 15224. PMID 29123202 DOI: 10.1038/S41598-017-15544-W |
0.727 |
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| 2017 |
Nater A, Mattle-Greminger MP, Nurcahyo A, Nowak MG, de Manuel M, Desai T, Groves C, Pybus M, Sonay TB, Roos C, Lameira AR, Wich SA, Askew J, Davila-Ross M, Fredriksson G, ... ... Marques-Bonet T, et al. Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species. Current Biology : Cb. PMID 29103940 DOI: 10.1016/J.Cub.2017.09.047 |
0.451 |
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| 2017 |
Kuderna LFK, Tomlinson C, Hillier LW, Tran A, Fiddes I, Armstrong J, Laayouni H, Gordon D, Huddleston J, Perez RG, Povolotskaya I, Armero AS, Garrido JG, Ho D, Ribeca P, ... ... Marques-Bonet T, et al. A 3-way hybrid approach to generate a new high quality chimpanzee reference genome (Pan_tro_3.0). Gigascience. PMID 29092041 DOI: 10.1093/Gigascience/Gix098 |
0.834 |
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| 2017 |
Hernandez-Rodriguez J, Arandjelovic M, Lester J, de Filippo C, Weihmann A, Meyer M, Angedakin S, Casals F, Navarro A, Vigilant L, Kühl HS, Langergraber K, Boesch C, Hughes D, Marques-Bonet T. The impact of endogenous content, replicates and pooling on genome capture from fecal samples. Molecular Ecology Resources. PMID 29058768 DOI: 10.1111/1755-0998.12728 |
0.719 |
|
| 2017 |
Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, et al. The novel evolution of the sperm whale genome. Genome Biology and Evolution. PMID 28985367 DOI: 10.1093/Gbe/Evx187 |
0.532 |
|
| 2017 |
Ventura M, Catacchio CR, Sajjadian S, Vives L, Sudmant PH, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE. Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2. Genome Research. 27: 1621.1. PMID 28864551 DOI: 10.1101/Gr.226878.117 |
0.727 |
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| 2017 |
Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, ... Marques-Bonet T, et al. Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. Gigascience. 6: 1-13. PMID 28854615 DOI: 10.1093/Gigascience/Gix049 |
0.373 |
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| 2017 |
Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP. The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. Bmc Genomics. 18: 495. PMID 28662691 DOI: 10.1186/S12864-017-3883-3 |
0.551 |
|
| 2017 |
Maibach V, Hans JB, Hvilsom C, Marques-Bonet T, Vigilant L. MHC class I diversity in chimpanzees and bonobos. Immunogenetics. PMID 28623392 DOI: 10.1007/S00251-017-0990-X |
0.441 |
|
| 2017 |
Sullivan AP, de Manuel M, Marques-Bonet T, Perry GH. An evolutionary medicine perspective on Neandertal extinction. Journal of Human Evolution. 108: 62-71. PMID 28622932 DOI: 10.1016/J.Jhevol.2017.03.004 |
0.567 |
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| 2017 |
Librado P, Gamba C, Gaunitz C, Der Sarkissian C, Pruvost M, Albrechtsen A, Fages A, Khan N, Schubert M, Jagannathan V, Serres-Armero A, Kuderna LFK, Povolotskaya IS, Seguin-Orlando A, Lepetz S, ... ... Marques-Bonet T, et al. Ancient genomic changes associated with domestication of the horse. Science (New York, N.Y.). 356: 442-445. PMID 28450643 DOI: 10.1126/Science.Aam5298 |
0.457 |
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| 2017 |
Meyer KA, Marques-Bonet T, Sestan N. Differential Gene Expression in the Human Brain Is Associated with Conserved, but not Accelerated, Noncoding Sequences. Molecular Biology and Evolution. PMID 28204568 DOI: 10.1093/Molbev/Msx076 |
0.417 |
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| 2017 |
Nam K, Munch K, Mailund T, Nater A, Greminger MP, Krützen M, Marquès-Bonet T, Schierup MH. Evidence that the rate of strong selective sweeps increases with population size in the great apes. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137852 DOI: 10.1073/Pnas.1605660114 |
0.503 |
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| 2016 |
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, ... ... Marques-Bonet T, et al. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology. 17: 251. PMID 27964752 DOI: 10.1186/S13059-016-1090-1 |
0.536 |
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| 2016 |
Sanchez-Delgado M, Court F, Vidal E, Medrano J, Monteagudo-Sánchez A, Martin-Trujillo A, Tayama C, Iglesias-Platas I, Kondova I, Bontrop R, Poo-Llanillo ME, Marques-Bonet T, Nakabayashi K, Simón C, Monk D. Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting. Plos Genetics. 12: e1006427. PMID 27835649 DOI: 10.1371/Journal.Pgen.1006427 |
0.316 |
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| 2016 |
Cagan A, Theunert C, Laayouni H, Santpere G, Pybus M, Casals F, Prüfer K, Navarro A, Marques-Bonet T, Bertranpetit J, Andrés AM. Natural Selection in the Great Apes. Molecular Biology and Evolution. PMID 27795229 DOI: 10.1093/Molbev/Msw215 |
0.726 |
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| 2016 |
de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, ... ... Marques-Bonet T, et al. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science (New York, N.Y.). 354: 477-481. PMID 27789843 DOI: 10.1126/Science.Aag2602 |
0.788 |
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| 2016 |
Kuhlwilm M, de Manuel M, Nater A, Greminger MP, Krützen M, Marques-Bonet T. Evolution and demography of the great apes. Current Opinion in Genetics & Development. 41: 124-129. PMID 27716526 DOI: 10.1016/J.Gde.2016.09.005 |
0.534 |
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| 2016 |
Lobon I, Tucci S, de Manuel M, Ghirotto S, Benazzo A, Prado-Martinez J, Lorente-Galdos B, Nam K, Dabad M, Hernandez-Rodriguez J, Comas D, Navarro A, Schierup MH, Andres AM, Barbujani G, ... ... Marques-Bonet T, et al. Demographic history of the genus Pan inferred from whole mitochondrial genome reconstructions. Genome Biology and Evolution. PMID 27345955 DOI: 10.1093/Gbe/Evw124 |
0.765 |
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| 2016 |
Gallego A, Melé M, Balcells I, García-Ramallo E, Torruella-Loran I, Fernández-Bellon H, Abelló T, Kondova I, Bontrop R, Hvilsom C, Navarro A, Marquès-Bonet T, Espinosa-Parrilla Y. Functional Implications of Human-Specific Changes in Great Ape microRNAs. Plos One. 11: e0154194. PMID 27105073 DOI: 10.1371/Journal.Pone.0154194 |
0.72 |
|
| 2016 |
Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, ... ... Marques-Bonet T, et al. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics. 12: e1005851. PMID 26943675 DOI: 10.1371/Journal.Pgen.1005851 |
0.641 |
|
| 2016 |
de Valles-Ibáñez G, Hernandez-Rodriguez J, Prado-Martinez J, Luisi P, Marquès-Bonet T, Casals F. Genetic Load of Loss-of-Function Polymorphic Variants in Great Apes. Genome Biology and Evolution. 8: 871-7. PMID 26912403 DOI: 10.1093/Gbe/Evw040 |
0.477 |
|
| 2016 |
Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, ... Marques-Bonet T, et al. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature. PMID 26886800 DOI: 10.1038/Nature16544 |
0.52 |
|
| 2016 |
Koblmüller S, Vilà C, Lorente-Galdos B, Dabad M, Ramirez O, Marques-Bonet T, Wayne RK, Leonard JA. Whole mitochondrial genomes illuminate ancient intercontinental dispersals of grey wolves (Canis lupus) Journal of Biogeography. DOI: 10.1111/Jbi.12765 |
0.391 |
|
| 2015 |
Ruiz-Orera J, Hernandez-Rodriguez J, Chiva C, Sabidó E, Kondova I, Bontrop R, Marqués-Bonet T, Albà MM. Origins of De Novo Genes in Human and Chimpanzee. Plos Genetics. 11: e1005721. PMID 26720152 DOI: 10.1371/Journal.Pgen.1005721 |
0.539 |
|
| 2015 |
Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, Vilà C, Marques-Bonet T, Schnabel RD, Wayne RK, Lohmueller KE. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proceedings of the National Academy of Sciences of the United States of America. PMID 26699508 DOI: 10.1073/Pnas.1512501113 |
0.505 |
|
| 2015 |
Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilá C, ... Marques-Bonet T, et al. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research. PMID 26680994 DOI: 10.1101/Gr.197517.115 |
0.457 |
|
| 2015 |
Hernando-Herraez I, Garcia-Perez R, Sharp AJ, Marques-Bonet T. DNA Methylation: Insights into Human Evolution. Plos Genetics. 11: e1005661. PMID 26658498 DOI: 10.1371/Journal.Pgen.1005661 |
0.634 |
|
| 2015 |
Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel M, Godinez R, Komissarov A, ... ... Marques-Bonet T, et al. Genomic legacy of the African cheetah, Acinonyx jubatus. Genome Biology. 16: 277. PMID 26653294 DOI: 10.1186/S13059-015-0837-4 |
0.599 |
|
| 2015 |
Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, ... ... Marques-Bonet T, et al. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598656 DOI: 10.1073/Pnas.1513696112 |
0.486 |
|
| 2015 |
Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, ... ... Marques-Bonet T, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/J.Cub.2015.08.032 |
0.508 |
|
| 2015 |
Warren WC, Jasinska AJ, Garcia-Perez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, ... ... Marques-Bonet T, et al. The genome of the vervet (Chlorocebus aethiops sabaeus). Genome Research. PMID 26377836 DOI: 10.1101/Gr.192922.115 |
0.596 |
|
| 2015 |
Olalde I, Schroeder H, Sandoval-Velasco M, Vinner L, Lobón I, Ramirez O, Civit S, García Borja P, Salazar-García DC, Talamo S, María Fullola J, Xavier Oms F, Pedro M, Martínez P, Sanz M, et al. A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures. Molecular Biology and Evolution. PMID 26337550 DOI: 10.1093/Molbev/Msv181 |
0.529 |
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| 2015 |
Ruiz S, Lopez-Contreras AJ, Gabut M, Marion RM, Gutierrez-Martinez P, Bua S, Ramirez O, Olalde I, Rodrigo-Perez S, Li H, Marques-Bonet T, Serrano M, Blasco MA, Batada NN, Fernandez-Capetillo O. Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells. Nature Communications. 6: 8036. PMID 26292731 DOI: 10.1038/Ncomms9036 |
0.42 |
|
| 2015 |
Bilgin Sonay T, Carvalho T, Robinson MD, Greminger MP, Krützen M, Comas D, Highnam G, Mittelman D, Sharp A, Marques-Bonet T, Wagner A. Tandem repeat variation in human and great ape populations and its impact on gene expression divergence. Genome Research. PMID 26290536 DOI: 10.1101/Gr.190868.115 |
0.681 |
|
| 2015 |
Hernando-Herraez I, Heyn H, Fernandez-Callejo M, Vidal E, Fernandez-Bellon H, Prado-Martinez J, Sharp AJ, Esteller M, Marques-Bonet T. The interplay between DNA methylation and sequence divergence in recent human evolution. Nucleic Acids Research. 43: 8204-14. PMID 26170231 DOI: 10.1093/Nar/Gkv693 |
0.603 |
|
| 2015 |
Gallego Romero I, Pavlovic BJ, Hernando-Herraez I, Zhou X, Ward MC, Banovich NE, Kagan CL, Burnett JE, Huang CH, Mitrano A, Chavarria CI, Friedrich Ben-Nun I, Li Y, Sabatini K, Leonardo TR, ... ... Marques-Bonet T, et al. A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics. Elife. 4. PMID 26102527 DOI: 10.7554/Elife.07103 |
0.401 |
|
| 2015 |
Xue Y, Prado-Martinez J, Sudmant PH, Narasimhan V, Ayub Q, Szpak M, Frandsen P, Chen Y, Yngvadottir B, Cooper DN, de Manuel M, Hernandez-Rodriguez J, Lobon I, Siegismund HR, Pagani L, ... ... Marques-Bonet T, et al. Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding. Science (New York, N.Y.). 348: 242-5. PMID 25859046 DOI: 10.1126/Science.Aaa3952 |
0.792 |
|
| 2015 |
Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF. Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach. Genetics. 200: 295-308. PMID 25769979 DOI: 10.1534/Genetics.115.174425 |
0.563 |
|
| 2015 |
Romero IG, Pavlovic BJ, Hernando-Herraez I, Zhou X, Ward MC, Banovich NE, Kagan CL, Burnett JE, Huang CH, Mitrano A, Chavarria CI, Ben-Nun IF, Li Y, Sabatini K, Leonardo TR, ... ... Marques-Bonet T, et al. Author response: A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics Elife. DOI: 10.7554/Elife.07103.051 |
0.384 |
|
| 2014 |
Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, ... ... Marques-Bonet T, et al. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: E5661-9. PMID 25512547 DOI: 10.1073/Pnas.1416991111 |
0.553 |
|
| 2014 |
Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, ... Marques-Bonet T, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111 |
0.717 |
|
| 2014 |
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Marques-Bonet T, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679 |
0.812 |
|
| 2014 |
Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, ... ... Marques-Bonet T, et al. Annotated features of domestic cat - Felis catus genome. Gigascience. 3: 13. PMID 25143822 DOI: 10.1186/2047-217X-3-13 |
0.726 |
|
| 2014 |
Ramirez O, Olalde I, Berglund J, Lorente-Galdos B, Hernandez-Rodriguez J, Quilez J, Webster MT, Wayne RK, Lalueza-Fox C, Vilà C, Marques-Bonet T. Analysis of structural diversity in wolf-like canids reveals post-domestication variants. Bmc Genomics. 15: 465. PMID 24923435 DOI: 10.1186/1471-2164-15-465 |
0.44 |
|
| 2014 |
Watson CT, Marques-Bonet T, Sharp AJ, Mefford HC. The genetics of microdeletion and microduplication syndromes: an update. Annual Review of Genomics and Human Genetics. 15: 215-44. PMID 24773319 DOI: 10.1146/Annurev-Genom-091212-153408 |
0.705 |
|
| 2014 |
Olalde I, Sánchez-Quinto F, Datta D, Marigorta UM, Chiang CW, Rodríguez JA, Fernández-Callejo M, González I, Montfort M, Matas-Lalueza L, Civit S, Luiselli D, Charlier P, Pettener D, Ramírez O, et al. Genomic analysis of the blood attributed to Louis XVI (1754-1793), king of France. Scientific Reports. 4: 4666. PMID 24763138 DOI: 10.1038/Srep04666 |
0.756 |
|
| 2014 |
Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A. Late-replicating CNVs as a source of new genes. Biology Open. 3. PMID 24596403 DOI: 10.1242/Bio.20147815 |
0.57 |
|
| 2014 |
Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, ... ... Marques-Bonet T, et al. Genome sequencing highlights the dynamic early history of dogs. Plos Genetics. 10: e1004016. PMID 24453982 DOI: 10.1371/Journal.Pgen.1004016 |
0.775 |
|
| 2014 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, ... ... Marques-Bonet T, et al. Elephant shark genome provides unique insights into gnathostome evolution. Nature. 505: 174-9. PMID 24402279 DOI: 10.1038/Nature12826 |
0.491 |
|
| 2014 |
Roux J, Hernando-Herraez I, Banovich N, Perez RG, Chavarria C, Mitrano A, Pritchard J, Marques-Bonet T, Gilad Y. A genomic study of the contribution of DNA methylation to regulatory evolution in primates F1000research. 5. DOI: 10.7490/F1000Research.1096813.1 |
0.417 |
|
| 2014 |
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, ... ... Marques-Bonet T, et al. Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution Nature. 513: 574. DOI: 10.1038/Nature13699 |
0.498 |
|
| 2013 |
Juan D, Rico D, Marques-Bonet T, Fernández-Capetillo O, Valencia A. Late-replicating CNVs as a source of new genes. Biology Open. 2: 1402-11. PMID 24285712 DOI: 10.1242/bio.20136924 |
0.486 |
|
| 2013 |
Hernando-Herraez I, Prado-Martinez J, Garg P, Fernandez-Callejo M, Heyn H, Hvilsom C, Navarro A, Esteller M, Sharp AJ, Marques-Bonet T. Dynamics of DNA methylation in recent human and great ape evolution. Plos Genetics. 9: e1003763. PMID 24039605 DOI: 10.1371/Journal.Pgen.1003763 |
0.734 |
|
| 2013 |
Heyn H, Moran S, Hernando-Herraez I, Sayols S, Gomez A, Sandoval J, Monk D, Hata K, Marques-Bonet T, Wang L, Esteller M. DNA methylation contributes to natural human variation. Genome Research. 23: 1363-72. PMID 23908385 DOI: 10.1101/Gr.154187.112 |
0.359 |
|
| 2013 |
Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C, ... Marques-Bonet T, et al. Rates and patterns of great ape retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 110: 13457-62. PMID 23884656 DOI: 10.1073/Pnas.1310914110 |
0.817 |
|
| 2013 |
Sudmant PH, Huddleston J, Catacchio CR, Malig M, Hillier LW, Baker C, Mohajeri K, Kondova I, Bontrop RE, Persengiev S, Antonacci F, Ventura M, Prado-Martinez J, Marques-Bonet T, et al. Evolution and diversity of copy number variation in the great ape lineage. Genome Research. 23: 1373-82. PMID 23825009 DOI: 10.1101/Gr.158543.113 |
0.858 |
|
| 2013 |
Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, ... ... Marques-Bonet T, et al. Great ape genetic diversity and population history. Nature. 499: 471-5. PMID 23823723 DOI: 10.1038/Nature12228 |
0.816 |
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| 2013 |
Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, ... ... Marques-Bonet T, et al. The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. Bmc Genomics. 14: 363. PMID 23721540 DOI: 10.1186/1471-2164-14-363 |
0.84 |
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| 2013 |
Lorente-Galdos B, Bleyhl J, Santpere G, Vives L, RamÃrez O, Hernandez J, Anglada R, Cooper GM, Navarro A, Eichler EE, Marques-Bonet T. Accelerated exon evolution within primate segmental duplications. Genome Biology. 14: R9. PMID 23360670 DOI: 10.1186/Gb-2013-14-1-R9 |
0.804 |
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| 2013 |
Giannuzzi G, Siswara P, Malig M, Marques-Bonet T, Mullikin JC, Ventura M, Eichler EE. Evolutionary dynamism of the primate LRRC37 gene family. Genome Research. 23: 46-59. PMID 23064749 DOI: 10.1101/Gr.138842.112 |
0.666 |
|
| 2012 |
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González VM, Hénaff E, Câmara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, ... ... Marques-Bonet T, et al. The genome of melon (Cucumis melo L.). Proceedings of the National Academy of Sciences of the United States of America. 109: 11872-7. PMID 22753475 DOI: 10.1073/Pnas.1205415109 |
0.738 |
|
| 2012 |
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, ... ... Marques-Bonet T, et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 486: 527-31. PMID 22722832 DOI: 10.1038/Nature11128 |
0.853 |
|
| 2012 |
Ventura M, Catacchio CR, Sajjadian S, Vives L, Sudmant PH, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE. The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2. Genome Research. 22: 1036-49. PMID 22419167 DOI: 10.1101/Gr.136556.111 |
0.8 |
|
| 2012 |
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842 |
0.864 |
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| 2011 |
Gazave E, Darré F, Morcillo-Suarez C, Petit-Marty N, Carreño A, Marigorta UM, Ryder OA, Blancher A, Rocchi M, Bosch E, Baker C, Marquès-Bonet T, Eichler EE, Navarro A. Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome Research. 21: 1626-39. PMID 21824994 DOI: 10.1101/Gr.117242.110 |
0.777 |
|
| 2011 |
Ventura M, Catacchio CR, Alkan C, Marques-Bonet T, Sajjadian S, Graves TA, Hormozdiari F, Navarro A, Malig M, Baker C, Lee C, Turner EH, Chen L, Kidd JM, Archidiacono N, et al. Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Research. 21: 1640-9. PMID 21685127 DOI: 10.1101/Gr.124461.111 |
0.86 |
|
| 2011 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Marques-Bonet T, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687 |
0.859 |
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| 2011 |
Hurle B, Marques-Bonet T, Antonacci F, Hughes I, Ryan JF, Eichler EE, Ornitz DM, Green ED. Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses. Bmc Evolutionary Biology. 11: 23. PMID 21261979 DOI: 10.1186/1471-2148-11-23 |
0.775 |
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| 2010 |
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 468: 1053-60. PMID 21179161 DOI: 10.1038/Nature09710 |
0.756 |
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| 2010 |
Al-Shahrour F, Minguez P, Marqués-Bonet T, Gazave E, Navarro A, Dopazo J. Selection upon genome architecture: conservation of functional neighborhoods with changing genes. Plos Computational Biology. 6: e1000953. PMID 20949098 DOI: 10.1371/Journal.Pcbi.1000953 |
0.694 |
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| 2010 |
Antonacci F, Kidd JM, Marques-Bonet T, Teague B, Ventura M, Girirajan S, Alkan C, Campbell CD, Vives L, Malig M, Rosenfeld JA, Ballif BC, Shaffer LG, Graves TA, Wilson RK, et al. A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nature Genetics. 42: 745-50. PMID 20729854 DOI: 10.1038/Ng.643 |
0.823 |
|
| 2010 |
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, et al. A draft sequence of the Neandertal genome. Science (New York, N.Y.). 328: 710-22. PMID 20448178 DOI: 10.1126/Science.1188021 |
0.786 |
|
| 2009 |
Marques-Bonet T, Girirajan S, Eichler EE. The origins and impact of primate segmental duplications. Trends in Genetics : Tig. 25: 443-54. PMID 19796838 DOI: 10.1016/J.Tig.2009.08.002 |
0.814 |
|
| 2009 |
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, Eichler EE. Personalized copy number and segmental duplication maps using next-generation sequencing. Nature Genetics. 41: 1061-7. PMID 19718026 DOI: 10.1038/Ng.437 |
0.84 |
|
| 2009 |
Marques-Bonet T, Eichler EE. The evolution of human segmental duplications and the core duplicon hypothesis. Cold Spring Harbor Symposia On Quantitative Biology. 74: 355-62. PMID 19717539 DOI: 10.1101/Sqb.2009.74.011 |
0.735 |
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| 2009 |
Marques-Bonet T, Ryder OA, Eichler EE. Sequencing primate genomes: what have we learned? Annual Review of Genomics and Human Genetics. 10: 355-86. PMID 19630567 DOI: 10.1146/Annurev.Genom.9.081307.164420 |
0.705 |
|
| 2009 |
Moreno-Estrada A, Tang K, Sikora M, Marquès-Bonet T, Casals F, Navarro A, Calafell F, Bertranpetit J, Stoneking M, Bosch E. Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution. 26: 2285-97. PMID 19578157 DOI: 10.1093/Molbev/Msp134 |
0.675 |
|
| 2009 |
Antonacci F, Kidd JM, Marques-Bonet T, Ventura M, Siswara P, Jiang Z, Eichler EE. Characterization of six human disease-associated inversion polymorphisms. Human Molecular Genetics. 18: 2555-66. PMID 19383631 DOI: 10.1093/Hmg/Ddp187 |
0.809 |
|
| 2009 |
Bekpen C, Marques-Bonet T, Alkan C, Antonacci F, Leogrande MB, Ventura M, Kidd JM, Siswara P, Howard JC, Eichler EE. Death and resurrection of the human IRGM gene. Plos Genetics. 5: e1000403. PMID 19266026 DOI: 10.1371/Journal.Pgen.1000403 |
0.802 |
|
| 2009 |
Casals F, Ferrer-Admetlla A, Sikora M, Ramírez-Soriano A, Marquès-Bonet T, Despiau S, Roubinet F, Calafell F, Bertranpetit J, Blancher A. Human pseudogenes of the ABO family show a complex evolutionary dynamics and loss of function. Glycobiology. 19: 583-91. PMID 19218399 DOI: 10.1093/Glycob/Cwp017 |
0.526 |
|
| 2009 |
Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, et al. A burst of segmental duplications in the genome of the African great ape ancestor. Nature. 457: 877-81. PMID 19212409 DOI: 10.1038/Nature07744 |
0.855 |
|
| 2009 |
Girirajan S, Chen L, Graves T, Marques-Bonet T, Ventura M, Fronick C, Fulton L, Rocchi M, Fulton RS, Wilson RK, Mardis ER, Eichler EE. Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites. Genome Research. 19: 178-90. PMID 19029537 DOI: 10.1101/Gr.086041.108 |
0.788 |
|
| 2009 |
Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Nazareth LV, Muzny DM, Alkan C, Aksay G, Girirajan S, et al. A burst of segmental duplications in the genome of the African great ape ancestor Nature. 458: 238. DOI: 10.1038/nature07881 |
0.83 |
|
| 2008 |
Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Stone AC, Hurles ME, Tyler-Smith C, Eichler EE, Carter NP, Lee C, Redon R. Copy number variation and evolution in humans and chimpanzees. Genome Research. 18: 1698-710. PMID 18775914 DOI: 10.1101/Gr.082016.108 |
0.709 |
|
| 2008 |
Marques-Bonet T, Cheng Z, She X, Eichler EE, Navarro A. The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements. Bmc Genomics. 9: 384. PMID 18699995 DOI: 10.1186/1471-2164-9-384 |
0.803 |
|
| 2007 |
Marques-Bonet T, Sànchez-Ruiz J, Armengol L, Khaja R, Bertranpetit J, Lopez-Bigas N, Rocchi M, Gazave E, Navarro A. On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees. Genome Biology. 8: R230. PMID 17971225 DOI: 10.1186/Gb-2007-8-10-R230 |
0.686 |
|
| 2007 |
Jiang Z, Tang H, Ventura M, Cardone MF, Marques-Bonet T, She X, Pevzner PA, Eichler EE. Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. Nature Genetics. 39: 1361-8. PMID 17922013 DOI: 10.1038/Ng.2007.9 |
0.815 |
|
| 2007 |
Gazave E, Marqués-Bonet T, Fernando O, Charlesworth B, Navarro A. Patterns and rates of intron divergence between humans and chimpanzees. Genome Biology. 8: R21. PMID 17309804 DOI: 10.1186/Gb-2007-8-2-R21 |
0.669 |
|
| 2006 |
Okamura K, Feuk L, Marquès-Bonet T, Navarro A, Scherer SW. Frequent appearance of novel protein-coding sequences by frameshift translation. Genomics. 88: 690-7. PMID 16890400 DOI: 10.1016/J.Ygeno.2006.06.009 |
0.672 |
|
| 2006 |
Soldevila M, Andrés AM, Ramírez-Soriano A, Marquès-Bonet T, Calafell F, Navarro A, Bertranpetit J. The prion protein gene in humans revisited: lessons from a worldwide resequencing study. Genome Research. 16: 231-9. PMID 16369046 DOI: 10.1101/Gr.4345506 |
0.68 |
|
| 2005 |
Lalueza-Fox C, Castresana J, Sampietro L, Marquès-Bonet T, Alcover JA, Bertranpetit J. Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal. Bmc Evolutionary Biology. 5: 70. PMID 16332256 DOI: 10.1186/1471-2148-5-70 |
0.412 |
|
| 2005 |
Armengol L, Marquès-Bonet T, Cheung J, Khaja R, González JR, Scherer SW, Navarro A, Estivill X. Murine segmental duplications are hot spots for chromosome and gene evolution. Genomics. 86: 692-700. PMID 16256303 DOI: 10.1016/J.Ygeno.2005.08.008 |
0.724 |
|
| 2005 |
Marquès-Bonet T, Lao O, Goertsches R, Comabella M, Montalban X, Navarro A. Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans. Bioinformatics (Oxford, England). 21: ii180-1. PMID 16204099 DOI: 10.1093/Bioinformatics/Bti1118 |
0.66 |
|
| 2005 |
Marques-Bonet T, Navarro A. Chromosomal rearrangements are associated with higher rates of molecular evolution in mammals. Gene. 353: 147-54. PMID 15951139 DOI: 10.1016/J.Gene.2005.05.007 |
0.719 |
|
| 2004 |
Marquès-Bonet T, Cáceres M, Bertranpetit J, Preuss TM, Thomas JW, Navarro A. Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees. Trends in Genetics : Tig. 20: 524-9. PMID 15475109 DOI: 10.1016/J.Tig.2004.08.009 |
0.718 |
|
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