Chad Niederhuth - Publications

Affiliations: 
Plant Biology Michigan State University, East Lansing, MI 

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kenchanmane Raju SK, Ritter EJ, Niederhuth CE. Establishment, maintenance, and biological roles of non-CG methylation in plants. Essays in Biochemistry. PMID 31652316 DOI: 10.1042/EBC20190032  0.36
2017 Bewick AJ, Niederhuth CE, Ji L, Rohr NA, Griffin PT, Leebens-Mack J, Schmitz RJ. The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants. Genome Biology. 18: 65. PMID 28457232 DOI: 10.1186/s13059-017-1195-1  1
2016 Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, et al. Widespread natural variation of DNA methylation within angiosperms. Genome Biology. 17: 194. PMID 27671052 DOI: 10.1186/s13059-016-1059-0  1
2016 Niederhuth CE, Schmitz RJ. Putting DNA methylation in context: from genomes to gene expression in plants. Biochimica Et Biophysica Acta. PMID 27590871 DOI: 10.1016/j.bbagrm.2016.08.009  1
2016 Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/pnas.1604666113  1
2016 Griffin PT, Niederhuth CE, Schmitz RJ. A Comparative Analysis of 5-Azacytidine and Zebularine induced DNA Demethylation. G3 (Bethesda, Md.). PMID 27402357 DOI: 10.1534/g3.116.030262  1
2016 Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, ... ... Niederhuth CE, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/ng.3517  1
2015 Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SKT. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. 11: 990. PMID 28843284 DOI: 10.1016/j.celrep.2015.04.041  1
2015 Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, et al. From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. Plos One. 10: e0125000. PMID 25902288 DOI: 10.1371/journal.pone.0125000  1
2015 Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SK. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. PMID 25683717 DOI: 10.1016/j.celrep.2015.01.021  1
2014 Lane AK, Niederhuth CE, Ji L, Schmitz RJ. pENCODE: a plant encyclopedia of DNA elements. Annual Review of Genetics. 48: 49-70. PMID 25149370 DOI: 10.1146/annurev-genet-120213-092443  1
2014 Niederhuth CE, Schmitz RJ. Covering your bases: inheritance of DNA methylation in plant genomes. Molecular Plant. 7: 472-80. PMID 24270503 DOI: 10.1093/mp/sst165  1
2013 Niederhuth CE, Cho SK, Seitz K, Walker JC. Letting go is never easy: Abscission and receptor-like protein kinases Journal of Integrative Plant Biology. 55: 1251-1263. PMID 24138310 DOI: 10.1111/jipb.12116  1
2013 Niederhuth CE, Patharkar OR, Walker JC. Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq. Bmc Genomics. 14: 37. PMID 23327667 DOI: 10.1186/1471-2164-14-37  1
2012 Valdivia ER, Chevalier D, Sampedro J, Taylor I, Niederhuth CE, Walker JC. DVL genes play a role in the coordination of socket cell recruitment and differentiation. Journal of Experimental Botany. 63: 1405-12. PMID 22112938 DOI: 10.1093/jxb/err378  1
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