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Saima Shahid, Ph.D. - Publications

Affiliations: 
2009-2011 Biochemistry and Molecular Biology University of Dhaka, Dhaka, Dhaka Division, Bangladesh 
 2011-2017 Plant Biology Pennsylvania State University, State College, PA, United States 
 2017-2018 Molecular Genetics Ohio State University, Columbus, Columbus, OH 
 2018-2022 Donald Danforth Plant Science Center 
 2022- Plant Biology, Ecology and Evolution Oklahoma State University 
Area:
interspecies RNA interference, parasitic plants, epigenetics
Website:
https://shahidlab.github.io/
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Liu P, Cuerda-Gil D, Shahid S, Slotkin RK. The Epigenetic Control of the Transposable Element Life Cycle in Plant Genomes and Beyond. Annual Review of Genetics. 56: 63-87. PMID 36449356 DOI: 10.1146/annurev-genet-072920-015534  0.722
2020 Shahid S. On UPF Proteins, Baking Cookies, and the Many Targets of Nonsense-Mediated RNA Decay. The Plant Cell. 32: 2665-2666. PMID 33589935 DOI: 10.1105/tpc.20.00602  0.501
2020 Shahid S. Untangling the many targets of Nonsense-mediated RNA decay. The Plant Cell. PMID 32732310 DOI: 10.1105/Tpc.20.00602  0.6
2020 Yates-Stewart AD, Daron J, Wijeratne S, Shahid S, Edgington HA, Slotkin RK, Michel A. Soybean aphids adapted to host-plant resistance by down regulating putative effectors and up regulating transposable elements. Insect Biochemistry and Molecular Biology. 103363. PMID 32201218 DOI: 10.1016/J.Ibmb.2020.103363  0.755
2020 Shahid S, Slotkin RK. The current revolution in transposable element biology enabled by long reads. Current Opinion in Plant Biology. 54: 49-56. PMID 32007731 DOI: 10.1016/J.Pbi.2019.12.012  0.668
2019 Shahid S. To Be or Not to Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen's Response to Different Hosts. The Plant Cell. PMID 31852776 DOI: 10.1105/Tpc.19.00976  0.426
2019 Yang Z, Wafula EK, Kim G, Shahid S, McNeal JR, Ralph PE, Timilsena PR, Yu WB, Kelly EA, Zhang H, Person TN, Altman NS, Axtell MJ, Westwood JH, dePamphilis CW. Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants. Nature Plants. PMID 31332314 DOI: 10.1038/S41477-019-0458-0  0.787
2019 Choudury SG, Shahid S, Cuerda-Gil D, Panda K, Cullen A, Ashraf QUA, Sigman MJ, McCue AD, Slotkin RK. The RNA export factor ALY1 enables genome-wide RNA-directed DNA methylation. The Plant Cell. PMID 30814259 DOI: 10.1105/Tpc.18.00624  0.577
2018 Shahid S, Kim G, Johnson NR, Wafula E, Wang F, Coruh C, Bernal-Galeano V, Phifer T, dePamphilis CW, Westwood JH, Axtell MJ. MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs. Nature. 553: 82-85. PMID 29300014 DOI: 10.1038/Nature25027  0.748
2017 Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, Hossen QM, Hossain MZ, Ahmed R, Hossain MS, Kabir SM, Khan MS, Khan MM, Hasan R, Aktar N, ... ... Shahid S, et al. Comparative genomics of two jute species and insight into fibre biogenesis. Nature Plants. 3: 16223. PMID 28134914 DOI: 10.1038/Nplants.2016.223  0.523
2016 Shahid S, Begum R, Razzaque S, Jesmin, Seraj ZI. Variability in amylose content of Bangladeshi rice cultivars due to unique SNPs in Waxy allele Journal of Cereal Science. 71: 1-9. DOI: 10.1016/J.Jcs.2016.07.006  0.662
2015 Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ. Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants. The Plant Cell. PMID 26209555 DOI: 10.1105/Tpc.15.00228  0.794
2015 Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC. A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation. The Biochemical Journal. 467: 91-102. PMID 25793418 DOI: 10.1042/Bj20141063  0.568
2014 Coruh C, Shahid S, Axtell MJ. Seeing the forest for the trees: annotating small RNA producing genes in plants. Current Opinion in Plant Biology. 18: 87-95. PMID 24632306 DOI: 10.1016/J.Pbi.2014.02.008  0.808
2014 Shahid S, Axtell MJ. Identification and annotation of small RNA genes using ShortStack. Methods (San Diego, Calif.). 67: 20-7. PMID 24139974 DOI: 10.1016/J.Ymeth.2013.10.004  0.746
2011 Lisa LA, Elias SM, Rahman MS, Shahid S, Iwasaki T, Hasan AKMM, Kosuge K, Fukami Y, Seraj ZI. Physiology and gene expression of the rice landrace Horkuch under salt stress. Functional Plant Biology : Fpb. 38: 282-292. PMID 32480884 DOI: 10.1071/Fp10198  0.662
2011 Azad AK, Shahid S, Noman N, Lee H. Prediction of plant promoters based on hexamers and random triplet pair analysis. Algorithms For Molecular Biology : Amb. 6: 19. PMID 21711543 DOI: 10.1186/1748-7188-6-19  0.366
1970 Shahid S, Elias SM, Biswas S, Seraj ZI. READS - A Resource for Plant Non-coding Regulatory Sequence Analysis Plant Tissue Culture and Biotechnology. 20: 211-223. DOI: 10.3329/Ptcb.V20I2.6916  0.688
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