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Jungnam Cho - Publications

Affiliations: 
2014-2018 Centre of Excellence for Plant and Microbial Science - Shanghai, China 
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20/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee KP, Liu K, Kim EY, Medina-Puche L, Dong H, Di M, Singh RM, Li M, Qi S, Meng Z, Cho J, Zhang H, Lozano-Duran R, Kim C. The m6A reader ECT1 drives mRNA sequestration to dampen salicylic acid-dependent stress responses in Arabidopsis. The Plant Cell. PMID 38041863 DOI: 10.1093/plcell/koad300  0.317
2022 Brestovitsky A, Iwasaki M, Cho J, Adulyanukosol N, Paszkowski J, Catoni M. Specific suppression of long terminal repeat retrotransposon mobilization in plants. Plant Physiology. PMID 36583226 DOI: 10.1093/plphys/kiac605  0.678
2022 Koo H, Kim S, Park HS, Lee SJ, Paek NC, Cho J, Yang TJ. Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dongjin. Mobile Dna. 13: 18. PMID 35698176 DOI: 10.1186/s13100-022-00274-2  0.597
2022 Park SY, Cho J, Jeong DH. Small regulatory RNAs in rice epigenetic regulation. Biochemical Society Transactions. PMID 35579290 DOI: 10.1042/BST20210336  0.354
2022 Fan W, Wang L, Chu J, Li H, Kim EY, Cho J. Tracing Mobile DNAs: From Molecular to Population Scales. Frontiers in Plant Science. 13: 837378. PMID 35178063 DOI: 10.3389/fpls.2022.837378  0.452
2021 Fan W, Cho J. Quantitative Measurement of Transposon Copy Number Using the Droplet Digital PCR. Methods in Molecular Biology (Clifton, N.J.). 2250: 171-176. PMID 33900603 DOI: 10.1007/978-1-0716-1134-0_16  0.342
2021 Kim EY, Fan W, Cho J. Determination of TE Insertion Positions Using Transposon Display. Methods in Molecular Biology (Clifton, N.J.). 2250: 115-121. PMID 33900598 DOI: 10.1007/978-1-0716-1134-0_11  0.374
2021 Wang L, Cho J, Satheesh V. Bioinformatics Analysis Guides to LTR Retrotransposon-Derived Extrachromosomal Linear DNAs Identified by ALE-seq. Methods in Molecular Biology (Clifton, N.J.). 2250: 111-114. PMID 33900597 DOI: 10.1007/978-1-0716-1134-0_10  0.35
2021 Wang L, Kim EY, Cho J. High-Throughput Profiling of Extrachromosomal Linear DNAs of Long Terminal Repeat Retrotransposons by ALE-seq. Methods in Molecular Biology (Clifton, N.J.). 2250: 103-110. PMID 33900596 DOI: 10.1007/978-1-0716-1134-0_9  0.462
2021 Satheesh V, Fan W, Chu J, Cho J. Recent advancement of NGS technologies to detect active transposable elements in plants. Genes & Genomics. PMID 33555503 DOI: 10.1007/s13258-021-01040-z  0.451
2020 Tao GY, Ramakrishnan M, Vinod KK, Yrjälä K, Satheesh V, Cho J, Fu Y, Zhou M. Multi-omics analysis of cellular pathways involved in different rapid growth stages of moso bamboo. Tree Physiology. PMID 32705116 DOI: 10.1093/Treephys/Tpaa090  0.32
2020 Choi J, Lee T, Cho J, Servante EK, Pucker B, Summers W, Bowden S, Rahimi M, An K, An G, Bouwmeester HJ, Wallington EJ, Oldroyd G, Paszkowski U. The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice. Nature Communications. 11: 2114. PMID 32355217 DOI: 10.1038/S41467-020-16021-1  0.399
2020 Ramakrishnan M, Yrjälä K, Vinod KK, Sharma A, Cho J, Satheesh V, Zhou M. Genetics and genomics of moso bamboo (Phyllostachys edulis): Current status, future challenges, and biotechnological opportunities toward a sustainable bamboo industry Food and Energy Security. DOI: 10.1002/Fes3.229  0.369
2018 Cho J, Benoit M, Catoni M, Drost HG, Brestovitsky A, Oosterbeek M, Paszkowski J. Sensitive detection of pre-integration intermediates of long terminal repeat retrotransposons in crop plants. Nature Plants. PMID 30531940 DOI: 10.1038/S41477-018-0320-9  0.411
2018 Cho J. Transposon-Derived Non-coding RNAs and Their Function in Plants. Frontiers in Plant Science. 9: 600. PMID 29774045 DOI: 10.3389/Fpls.2018.00600  0.444
2017 Cho J, Paszkowski J. Regulation of rice root development by a retrotransposon acting as a microRNA sponge. Elife. 6. PMID 28847366 DOI: 10.7554/Elife.30038  0.598
2017 Cho J, Paszkowski J. Author response: Regulation of rice root development by a retrotransposon acting as a microRNA sponge Elife. DOI: 10.7554/Elife.30038.054  0.592
2015 Kang MY, Yoo SC, Kwon HY, Lee BD, Cho JN, Noh YS, Paek NC. Negative regulatory roles of DE-ETIOLATED1 in flowering time in Arabidopsis. Scientific Reports. 5: 9728. PMID 25962685 DOI: 10.1038/Srep09728  0.337
2012 Cho JN, Ryu JY, Jeong YM, Park J, Song JJ, Amasino RM, Noh B, Noh YS. Control of seed germination by light-induced histone arginine demethylation activity. Developmental Cell. 22: 736-48. PMID 22483719 DOI: 10.1016/J.Devcel.2012.01.024  0.336
2009 Song HR, Song JD, Cho JN, Amasino RM, Noh B, Noh YS. The RNA binding protein ELF9 directly reduces SUPPRESSOR OF OVEREXPRESSION OF CO1 transcript levels in arabidopsis, possibly via nonsense-mediated mRNA decay. The Plant Cell. 21: 1195-211. PMID 19376936 DOI: 10.1105/Tpc.108.064774  0.343
Low-probability matches (unlikely to be authored by this person)
2023 Fan W, Wang L, Lei Z, Li H, Chu J, Yan M, Wang Y, Wang H, Yang J, Cho J. mA RNA demethylase AtALKBH9B promotes mobilization of a heat-activated long terminal repeat retrotransposon in . Science Advances. 9: eadf3292. PMID 38019921 DOI: 10.1126/sciadv.adf3292  0.29
2021 Lei Z, Kim EY, Cho J. Enrichment of Cytoplasmic RNA Granules from Seedlings. Bio-Protocol. 11: e4212. PMID 34859127 DOI: 10.21769/BioProtoc.4212  0.266
2021 Kim EY, Wang L, Lei Z, Li H, Fan W, Cho J. Ribosome stalling and SGS3 phase separation prime the epigenetic silencing of transposons. Nature Plants. PMID 33649597 DOI: 10.1038/s41477-021-00867-4  0.266
2023 Xie Y, Ying S, Li Z, Zhang Y, Zhu J, Zhang J, Wang M, Diao H, Wang H, Zhang Y, Ye L, Zhuang Y, Zhao F, Teng W, Zhang W, ... ... Cho J, et al. Transposable element-initiated enhancer-like elements generate the subgenome-biased spike specificity of polyploid wheat. Nature Communications. 14: 7465. PMID 37978184 DOI: 10.1038/s41467-023-42771-9  0.266
2021 Kim EY, Kim KD, Cho J. Harnessing epigenetic variability for crop improvement: current status and future prospects. Genes & Genomics. PMID 34807374 DOI: 10.1007/s13258-021-01189-7  0.264
2022 Wang L, Zhuang H, Fan W, Zhang X, Dong H, Yang H, Cho J. mA RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis. Genome Biology. 23: 244. PMID 36419179 DOI: 10.1186/s13059-022-02814-8  0.25
2023 Wang L, Li H, Lei Z, Jeong DH, Cho J. The CARBON CATABOLITE REPRESSION 4A-mediated RNA deadenylation pathway acts on the transposon RNAs that are not regulated by small RNAs. The New Phytologist. PMID 38009859 DOI: 10.1111/nph.19435  0.245
2021 Lei Z, Wang L, Kim EY, Cho J. Phase separation of chromatin and small RNA pathways in plants. The Plant Journal : For Cell and Molecular Biology. PMID 34585805 DOI: 10.1111/tpj.15517  0.235
2023 Chu J, Wang L, Cho J. PopRice extrachromosomal DNA sponges ABSCISIC ACID-INSENSITIVE 5 in rice seed-to-seedling transition. Plant Physiology. PMID 36733191 DOI: 10.1093/plphys/kiad071  0.167
2023 Cho J, Schubert D, Zhou Y. Editorial: Beyond genetics: modifications of nucleic acid and chromatin. Frontiers in Plant Science. 14: 1223443. PMID 37324725 DOI: 10.3389/fpls.2023.1223443  0.073
2023 Chu J, Zhang X, Cho J. Visualization of synthetic retroelement integration reveals determinants of permissivity to retrotransposition. Plant Physiology. PMID 37403199 DOI: 10.1093/plphys/kiad396  0.071
2011 Kim BK, Cho JN, Park HJ, Hong SP, Son JY, Lee JB, Ryu JK, Choi JY, Chang SG, Kim KS. Reversible pulmonary hypertension in adolescent with left atrial myxoma. Journal of Cardiovascular Ultrasound. 19: 221-3. PMID 22259669 DOI: 10.4250/jcu.2011.19.4.221  0.022
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