Isabel R. Gerhardt - Related publications

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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Birukou I, Zawadzki M, Graser G, Young S. Protein Characterization by MALDI In-Source Decay Mass Spectrometry in Support of Safety Assessments of Genetically Modified Crops. Journal of Agricultural and Food Chemistry. PMID 34428040 DOI: 10.1021/acs.jafc.1c00512   
2021 Xu M, Zhang X, Yu J, Guo Z, Li Y, Song X, He K, Li G, Chi Y. Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in in Peanuts. Frontiers in Microbiology. 12: 719337. PMID 34489910 DOI: 10.3389/fmicb.2021.719337   
2021 Azizi M, Tasharofi S, Koolivand A, Oloumi A, Rion H, Khaledi MG. Improving identification of low abundance and hydrophobic proteins using fluoroalcohol mediated supramolecular biphasic systems with quaternary ammonium salts. Journal of Chromatography. A. 1655: 462483. PMID 34492580 DOI: 10.1016/j.chroma.2021.462483   
2021 Parada C, Neri-Badillo IC, Vallecillo AJ, Segura E, Silva-Miranda M, Guzmán-Gutiérrez SL, Ortega PA, Coronado-Aceves EW, Cancino-Villeda L, Torres-Larios A, Aceves Sánchez MJ, Flores Valdez MA, Espitia C. New Insights into the Methylation of Heparin Binding Hemagglutinin Adhesin Expressed in . Pathogens (Basel, Switzerland). 10. PMID 34578171 DOI: 10.3390/pathogens10091139   
2021 Pathanraj D, Choowongkomon K, Roytrakul S, Yokthongwattana C. Structural Distinctive 26SK, a Ribosome-Inactivating Protein from Jatropha curcas and Its Biological Activities. Applied Biochemistry and Biotechnology. PMID 34669111 DOI: 10.1007/s12010-021-03714-6   
2021 Giaveri S, Schmitt AM, Roset Julià L, Scamarcio V, Murello A, Cheng S, Menin L, Ortiz D, Patiny L, Bolisetty S, Mezzenga R, Maerkl SJ, Stellacci F. Nature-Inspired Circular-Economy Recycling for Proteins: Proof of Concept. Advanced Materials (Deerfield Beach, Fla.). e2104581. PMID 34554608 DOI: 10.1002/adma.202104581   
2021 Zhu Y, Qiu W, Li Y, Tan J, Han X, Wu L, Jiang Y, Deng Z, Wu C, Zhuo R. Quantitative proteome analysis reveals changes of membrane transport proteins in Sedum plumbizincicola under cadmium stress. Chemosphere. 287: 132302. PMID 34563781 DOI: 10.1016/j.chemosphere.2021.132302   
2021 Niu X, Yang G, Lin H, Liu Y, Li P, Zheng A. A Novel, Small Cysteine-Rich Effector, RsSCR10 in Is Sufficient to Trigger Plant Cell Death. Frontiers in Microbiology. 12: 684923. PMID 34497591 DOI: 10.3389/fmicb.2021.684923   
2021 Zhang Y, Zhang J, Song M, Lin X, Tong Z, Ding M. Comprehensive Analysis of Five  -like Genes and Their Potential Functions in Flower Development. International Journal of Molecular Sciences. 22. PMID 34639205 DOI: 10.3390/ijms221910868   
2021 Huang HJ, Yan XT, Wei ZY, Wang YZ, Chen JP, Li JM, Sun ZT, Zhang CX. Identification of   Salivary Proteins and Their Roles in Inducing Plant Defenses. Biology. 10. PMID 34439985 DOI: 10.3390/biology10080753   
2021 Numan M, Bukhari SA, Rehman MU, Mustafa G, Sadia B. Phylogenetic analyses, protein modeling and active site prediction of two pathogenesis related (PR2 and PR3) genes from bread wheat. Plos One. 16: e0257392. PMID 34506613 DOI: 10.1371/journal.pone.0257392   
2021 Leissing F, Misch NV, Wang X, Werner L, Huang L, Conrath U, Beckers GJM. Purification of MAP-kinase protein complexes and identification of candidate components by XL-TAP-MS. Plant Physiology. PMID 34609515 DOI: 10.1093/plphys/kiab446   
2021 Rosario FJ, Pardo S, Michelsen TM, Erickson K, Moore L, Powell TL, Weintraub ST, Jansson T. Characterization of the Primary Human Trophoblast Cell Secretome Using Stable Isotope Labeling With Amino Acids in Cell Culture. Frontiers in Cell and Developmental Biology. 9: 704781. PMID 34595166 DOI: 10.3389/fcell.2021.704781   
2021 Smythers AL, Iannetta AA, Hicks LM. Crosslinking mass spectrometry unveils novel interactions and structural distinctions in the model green alga . Molecular Omics. PMID 34499065 DOI: 10.1039/d1mo00197c   
2021 Chepyala SR, Liu X, Yang K, Wu Z, Breuer AM, Cho JH, Li Y, Mancieri A, Jiao Y, Zhang H, Peng J. JUMPt: Comprehensive Protein Turnover Modeling of In Vivo Pulse SILAC Data by Ordinary Differential Equations. Analytical Chemistry. PMID 34587451 DOI: 10.1021/acs.analchem.1c02309   
2021 Hippe K, Lilley C, William Berkenpas J, Chandana Pocha C, Kishaba K, Ding H, Hou J, Si D, Cao R. ZoomQA: residue-level protein model accuracy estimation with machine learning on sequential and 3D structural features. Briefings in Bioinformatics. PMID 34553747 DOI: 10.1093/bib/bbab384   
2021 Yin B, Caggiano LR, Li RC, McGowan E, Holmes JW, Ewald SE. Automated Spatially Targeted Optical Microproteomics Investigates Inflammatory Lesions . Journal of Proteome Research. PMID 34436902 DOI: 10.1021/acs.jproteome.1c00505   
2021 Jorasia K, Paul RK, Rathore NS, Lal P, Singh R, Sareen M. Production of bioactive recombinant ovine cysteine-rich secretory protein 1 in Escherichia coli. Systems Biology in Reproductive Medicine. 1-11. PMID 34459353 DOI: 10.1080/19396368.2021.1963012   
2021 Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA. Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells. Acs Chemical Biology. PMID 34590824 DOI: 10.1021/acschembio.1c00649   
2021 Robin X, Haas J, Gumienny R, Smolinski A, Tauriello G, Schwede T. Continuous Automated Model EvaluatiOn (CAMEO)-Perspectives on the future of fully automated evaluation of structure prediction methods. Proteins. PMID 34387007 DOI: 10.1002/prot.26213   
2021 Pal A, Mulumudy R, Mitra P. Modularity-based Parallel Protein Design Algorithm with an Implementation using Shared Memory Programming. Proteins. PMID 34651333 DOI: 10.1002/prot.26263   
2021 Lucas FLR, Versloot RCA, Yakovlieva L, Walvoort MTC, Maglia G. Protein identification by nanopore peptide profiling. Nature Communications. 12: 5795. PMID 34608150 DOI: 10.1038/s41467-021-26046-9   
2021 Peng J, Zhu KX, Guo XN, Zhou HM. Egg white protein addition induces protein aggregation and fibrous structure formation of textured wheat gluten. Food Chemistry. 371: 131102. PMID 34537616 DOI: 10.1016/j.foodchem.2021.131102   
2021 Feng Y, Wang R, Su D, Zhai Y, Wang L, Yu L, Zhang Y, Ma X, Ma F. Identifying new sperm Western blot loading controls. Andrologia. e14226. PMID 34478154 DOI: 10.1111/and.14226   
2021 Li J, Cai Z, Vaites LP, Shen N, Mitchell DC, Huttlin EL, Paulo JA, Harry BL, Gygi SP. Proteome-wide mapping of short-lived proteins in human cells. Molecular Cell. PMID 34626566 DOI: 10.1016/j.molcel.2021.09.015   
2021 Ahmed H, Ajat M, Mahmood RI, Mansor R, Razak ISA, Al-Obaidi JR, Razali N, Jaji AZ, Danmaigoro A, Bakar MZA. LC-MS/MS Proteomic Study of MCF-7 Cell Treated with Dox and Dox-Loaded Calcium Carbonate Nanoparticles Revealed Changes in Proteins Related to Glycolysis, Actin Signalling, and Energy Metabolism. Biology. 10. PMID 34571787 DOI: 10.3390/biology10090909   
2021 Tian Y, Tirrell M, Davis C, Wesson JA. Protein primary structure correlates with calcium oxalate stone matrix preference. Plos One. 16: e0257515. PMID 34555074 DOI: 10.1371/journal.pone.0257515   
2021 Mao Y, Zheng J, Feng S, Tian R. [Comparison of the performance of secretome analysis based on metabolic labeling by three unnatural sugars]. SE Pu = Chinese Journal of Chromatography. 39: 1086-1093. PMID 34505430 DOI: 10.3724/SP.J.1123.2021.04017   
2021 Islam MS, Mia MAK, Rahman MS, Arefin MS, Dhar PK, Koshiba T. Frequent contiguous pattern mining over biological sequences of protein misfolded diseases. Bmc Bioinformatics. 22: 435. PMID 34511072 DOI: 10.1186/s12859-021-04341-y   
2021 Wu Y, Shen YB. Sulfuric Acid and Gibberellic Acid (GA) Treatment Combined with Exposure to Cold Temperature Modulates Seed Proteins during Breaking of Dormancy to Germination in Tilia miqueliana. The Protein Journal. PMID 34480247 DOI: 10.1007/s10930-021-10018-5   
2021 Jin YT, Jin TY, Zhang ZL, Ye YN, Deng Z, Wang J, Guo FB. Quantitative elucidation of associations between nucleotide identity and physicochemical properties of amino acids and the functional insight. Computational and Structural Biotechnology Journal. 19: 4042-4048. PMID 34527183 DOI: 10.1016/j.csbj.2021.07.012   
2021 Merli ML, Padgett-Pagliai KA, Cuaycal AE, Garcia L, Marano MR, Lorca GL, Gonzalez CF. ' Liberibacter asiaticus' Multimeric LotP Mediates Defense Response Activation. Frontiers in Microbiology. 12: 661547. PMID 34421834 DOI: 10.3389/fmicb.2021.661547   
2021 Kundu S. ProTG4: A Web Server to Approximate the Sequence of a Generic Protein From an in Silico Library of Translatable G-Quadruplex (4)-Mapped Peptides. Bioinformatics and Biology Insights. 15: 11779322211045878. PMID 34602814 DOI: 10.1177/11779322211045878   
2021 Queiroz LS, Regnard M, Jessen F, Mohammadifar MA, Sloth JJ, Petersen HO, Ajalloueian F, Brouzes CMC, Fraihi W, Fallquist H, de Carvalho AF, Casanova F. Physico-chemical and colloidal properties of protein extracted from black soldier fly (Hermetia illucens) larvae. International Journal of Biological Macromolecules. 186: 714-723. PMID 34274399 DOI: 10.1016/j.ijbiomac.2021.07.081   
2021 Pérez-Ramírez IF, Cariño-Sarabia A, Castaño-Tostado E, Vázquez-Landaverde PA, Ramos-Gómez M, Reynoso-Camacho R, Amaya-Llano SL. Chemical and sensorial characterization of Tejate, a Mexican traditional maize-cocoa beverage, and improvement of its nutritional value by protein addition. Journal of Food Science and Technology. 58: 3548-3560. PMID 34366472 DOI: 10.1007/s13197-021-05073-w   
2021 Yurgel SN, Qu Y, Rice J, Ajeethan N, Zink E, Brown J, Purvine S, Lipton M, Kahn M. Specialization in a nitrogen-fixing symbiosis: proteome differences between Sinorhizobium medicae bacteria and bacteroids. Molecular Plant-Microbe Interactions : Mpmi. PMID 34402628 DOI: 10.1094/MPMI-07-21-0180-R   
2021 Li M, Zheng X, Shanker S, Jaroentomeechai T, Moeller TD, Hulbert SW, Koçer I, Byrne J, Cox EC, Fu Q, Zhang S, Labonte JW, Gray JJ, DeLisa MP. Shotgun scanning glycomutagenesis: A simple and efficient strategy for constructing and characterizing neoglycoproteins. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34551980 DOI: 10.1073/pnas.2107440118   
2021 Zulfiqar H, Yuan SS, Huang QL, Sun ZJ, Dao FY, Yu XL, Lin H. Identification of cyclin protein using gradient boost decision tree algorithm. Computational and Structural Biotechnology Journal. 19: 4123-4131. PMID 34527186 DOI: 10.1016/j.csbj.2021.07.013   
2021 Shah P, Chen CS. Systematical Screening of Intracellular Protein Targets of Polyphemusin-I Using Proteome Microarrays. International Journal of Molecular Sciences. 22. PMID 34502067 DOI: 10.3390/ijms22179158   
2021 Hong G, Su X, Xu K, Liu B, Wang G, Li J, Wang R, Zhu M, Li G. Salt stress downregulates 2-hydroxybutyrylation in Arabidopsis siliques. Journal of Proteomics. 104383. PMID 34562664 DOI: 10.1016/j.jprot.2021.104383   
2021 Li X, Wang Z, Fu Y, Cheng X, Zhang Y, Fan B, Zhu C, Chen Z. Two ubiquitin-associated ER proteins interact with COPT copper transporters and modulate their accumulation. Plant Physiology. PMID 34618061 DOI: 10.1093/plphys/kiab381   
2021 Johnson RL, Blaber HG, Evans T, Worthy HL, Pope JR, Jones DD. Designed Artificial Protein Heterodimers With Coupled Functions Constructed Using Bio-Orthogonal Chemistry. Frontiers in Chemistry. 9: 733550. PMID 34422774 DOI: 10.3389/fchem.2021.733550   
2021 Sim SYJ, Srv A, Chiang JH, Henry CJ. Plant Proteins for Future Foods: A Roadmap. Foods (Basel, Switzerland). 10. PMID 34441744 DOI: 10.3390/foods10081967   
2021 Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, et al. Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic. Proteins. PMID 34580920 DOI: 10.1002/prot.26250   
2021 Santilli RT, Williamson JE, Shibata Y, Sowers RP, Fleischman AN, Tan S. The Penn State Protein Ladder system for inexpensive protein molecular weight markers. Scientific Reports. 11: 16703. PMID 34408191 DOI: 10.1038/s41598-021-96051-x   
2021 Pedreira T, Elfmann C, Singh N, Stülke J. SynWiki: Functional annotation of the first artificial organism Mycoplasma mycoides JCVI-syn3A. Protein Science : a Publication of the Protein Society. PMID 34515387 DOI: 10.1002/pro.4179   
2021 Li M, Xue Y, He R, Huang Q. Isolation of Protein Complexes Associated with Long Non-coding RNAs. Methods in Molecular Biology (Clifton, N.J.). 2372: 27-33. PMID 34417740 DOI: 10.1007/978-1-0716-1697-0_4   
2021 McLellan H, Armstrong MR, Birch PRJ. Yeast Two-Hybrid Screening for Identification of Protein-Protein Interactions in Solanum tuberosum. Methods in Molecular Biology (Clifton, N.J.). 2354: 95-110. PMID 34448156 DOI: 10.1007/978-1-0716-1609-3_4   
2021 Collins JM, Wang D. Cytochrome P450 3A4 (CYP3A4) protein quantification using capillary western blot technology and total protein normalization. Journal of Pharmacological and Toxicological Methods. 107117. PMID 34474151 DOI: 10.1016/j.vascn.2021.107117   
2021 Soares JRA, Pereira E Silva A, de Souza Oliveira AL, Guimarães IM, das Neves Faccini CRJ, de Aquino Mattos EB, Rodrigues SKPM, Marmello BO, Teixeira GAPB. Allergen extraction: Factors influencing immunogenicity and sensitivity of immunoassays. Journal of Immunological Methods. 498: 113125. PMID 34450115 DOI: 10.1016/j.jim.2021.113125