Seung Yon Rhee - Publications

Carnegie Institution for Science, USA 
systems biology, plant biology, metabolism

91 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cho H, Banf M, Shahzad Z, Van Leene J, Bossi F, Ruffel S, Bouain N, Cao P, Krouk G, De Jaeger G, Lacombe B, Brandizzi F, Rhee SY, Rouached H. ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis. Current Biology : Cb. PMID 36963384 DOI: 10.1016/j.cub.2023.03.005  0.755
2023 Field S, Jang GJ, Dean C, Strader LC, Rhee SY. Plants use molecular mechanisms mediated by biomolecular condensates to integrate environmental cues with development. The Plant Cell. PMID 36879427 DOI: 10.1093/plcell/koad062  0.31
2023 Zhao K, Rhee SY. Interpreting omics data with pathway enrichment analysis. Trends in Genetics : Tig. PMID 36750393 DOI: 10.1016/j.tig.2023.01.003  0.748
2022 Ginzburg DN, Bossi F, Rhee SY. Uncoupling differential water usage from drought resistance in a dwarf Arabidopsis mutant. Plant Physiology. PMID 36053183 DOI: 10.1093/plphys/kiac411  0.765
2022 Bossi F, Jin B, Lazarus E, Cartwright H, Dorone Y, Rhee SY. CHIQUITA1 maintains temporal transition between proliferation and differentiation in Arabidopsis thaliana. Development (Cambridge, England). PMID 35574989 DOI: 10.1242/dev.200565  0.738
2022 Zhao K, Rhee SY. Omics-guided metabolic pathway discovery in plants: Resources, approaches, and opportunities. Current Opinion in Plant Biology. 67: 102222. PMID 35512431 DOI: 10.1016/j.pbi.2022.102222  0.785
2021 Dorone Y, Boeynaems S, Rhee SY. Live imaging embryos under different hydration conditions. Star Protocols. 2: 101025. PMID 34977672 DOI: 10.1016/j.xpro.2021.101025  0.759
2021 Nam HI, Shahzad Z, Dorone Y, Clowez S, Zhao K, Bouain N, Lay-Pruitt KS, Cho H, Rhee SY, Rouached H. Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling. Nature Communications. 12: 7211. PMID 34893639 DOI: 10.1038/s41467-021-27548-2  0.746
2021 Zhao K, Kong D, Jin B, Smolke CD, Rhee SY. A novel form of bivalent chromatin associates with rapid induction of camalexin biosynthesis genes in response to a pathogen signal in Arabidopsis. Elife. 10. PMID 34523419 DOI: 10.7554/eLife.69508  0.774
2021 Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, ... ... Rhee SY, et al. Vision, challenges and opportunities for a Plant Cell Atlas. Elife. 10. PMID 34491200 DOI: 10.7554/eLife.66877  0.304
2021 Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, Rice S, Cole B, Paley S, Karp P, Rhee SY. Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. Journal of Integrative Plant Biology. PMID 34403192 DOI: 10.1111/jipb.13163  0.782
2021 Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, et al. Plant single-cell solutions for energy and the environment. Communications Biology. 4: 962. PMID 34385583 DOI: 10.1038/s42003-021-02477-4  0.626
2021 Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, ... ... Rhee SY, et al. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Cell. PMID 34233164 DOI: 10.1016/j.cell.2021.06.009  0.733
2021 Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, ... ... Rhee SY, et al. Author Correction: Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nature Communications. 12: 1665. PMID 33686081 DOI: 10.1038/s41467-021-21987-7  0.739
2020 Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, ... ... Rhee SY, et al. Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nature Communications. 11: 5875. PMID 33208749 DOI: 10.1038/s41467-020-19681-1  0.786
2020 Rice S, Fryer E, Ghosh Jha S, Malkovskiy A, Meyer H, Thomas J, Weizbauer R, Zhao K, Birnbaum K, Ehrhardt D, Wang Z, Rhee SY. First plant cell atlas workshop report. Plant Direct. 4: e00271. PMID 33083684 DOI: 10.1002/pld3.271  0.781
2020 Lin F, Lazarus EZ, Rhee SY. QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. G3 (Bethesda, Md.). PMID 32430305 DOI: 10.1534/G3.120.401122  0.408
2019 Bouain N, Korte A, Satbhai SB, Nam HI, Rhee SY, Busch W, Rouached H. Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation. Plos Genetics. 15: e1008392. PMID 31693663 DOI: 10.1371/Journal.Pgen.1008392  0.358
2019 Lin F, Fan J, Rhee SY. QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice. G3 (Bethesda, Md.). PMID 31358562 DOI: 10.1534/G3.119.400319  0.392
2019 Rhee SY, Birnbaum KD, Ehrhardt DW. Towards Building a Plant Cell Atlas. Trends in Plant Science. PMID 30777643 DOI: 10.1016/J.Tplants.2019.01.006  0.391
2019 Banf M, Zhao K, Rhee SY. METACLUSTER - an R package for context-specific expression analysis of metabolic gene clusters. Bioinformatics (Oxford, England). PMID 30657869 DOI: 10.1093/Bioinformatics/Btz021  0.771
2017 Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, ... ... Rhee S, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490  0.583
2017 Bossi F, Fan J, Xiao J, Chandra L, Shen M, Dorone Y, Wagner D, Rhee SY. Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction. Bmc Genomics. 18: 480. PMID 28651538 DOI: 10.1186/S12864-017-3853-9  0.725
2017 Chavali AK, Rhee SY. Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites. Briefings in Bioinformatics. PMID 28398567 DOI: 10.1093/Bib/Bbx020  0.384
2017 Schlapfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Genome-wide prediction of metabolic enzymes, pathways and gene clusters in plants. Plant Physiology. PMID 28228535 DOI: 10.1104/Pp.16.01942  0.43
2017 Banf M, Rhee SY. Enhancing gene regulatory network inference through data integration with markov random fields. Scientific Reports. 7: 41174. PMID 28145456 DOI: 10.1038/Srep41174  0.353
2017 Rouached H, Rhee SY. System-level understanding of plant mineral nutrition in the big data era Current Opinion in Systems Biology. 4: 71-77. DOI: 10.1016/J.Coisb.2017.07.008  0.406
2016 Walsh JR, Schaeffer ML, Zhang P, Rhee SY, Dickerson JA, Sen TZ. The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. Bmc Systems Biology. 10: 129. PMID 27899149 DOI: 10.1186/S12918-016-0369-X  0.345
2016 Zheng Y, Jiao C, Sun H, Rosli HG, Pombo MA, Zhang P, Banf M, Dai X, Martin GB, Giovannoni JJ, Zhao PX, Rhee SY, Fei Z. iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases. Molecular Plant. PMID 27717919 DOI: 10.1016/J.Molp.2016.09.014  0.381
2016 Banf M, Rhee SY. Computational inference of gene regulatory networks: approaches, limitations and opportunities. Biochimica Et Biophysica Acta. PMID 27641093 DOI: 10.1016/J.Bbagrm.2016.09.003  0.381
2016 Rhee SY, Parker JE, Mockler TC. A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor. Genome Biology. 17: 3. PMID 26754022 DOI: 10.1186/S13059-016-0870-Y  0.434
2015 de Klein N, Magnani E, Banf M, Rhee SY. microProtein Prediction Program (miP3): A Software for Predicting microProteins and Their Target Transcription Factors. International Journal of Genomics. 2015: 734147. PMID 26060811 DOI: 10.1155/2015/734147  0.324
2015 Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. Bmc Bioinformatics. 16: 44. PMID 25886899 DOI: 10.1186/S12859-015-0474-7  0.493
2015 Ladics GS, Bartholomaeus A, Bregitzer P, Doerrer NG, Gray A, Holzhauser T, Jordan M, Keese P, Kok E, Macdonald P, Parrott W, Privalle L, Raybould A, Rhee SY, Rice E, et al. Genetic basis and detection of unintended effects in genetically modified crop plants. Transgenic Research. PMID 25716164 DOI: 10.1007/S11248-015-9867-7  0.374
2015 Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network. Plant Physiology. 167: 1685-98. PMID 25670818 DOI: 10.1104/Pp.114.252361  0.35
2014 Xu M, Rhee SY. Becoming data-savvy in a big-data world. Trends in Plant Science. 19: 619-22. PMID 25213119 DOI: 10.1016/J.Tplants.2014.08.003  0.307
2014 Jones AM, Xuan Y, Xu M, Wang RS, Ho CH, Lalonde S, You CH, Sardi MI, Parsa SA, Smith-Valle E, Su T, Frazer KA, Pilot G, Pratelli R, Grossmann G, ... ... Rhee SY, et al. Border control--a membrane-linked interactome of Arabidopsis. Science (New York, N.Y.). 344: 711-6. PMID 24833385 DOI: 10.1126/Science.1251358  0.414
2014 Chae L, Kim T, Nilo-Poyanco R, Rhee SY. Genomic signatures of specialized metabolism in plants Science. 344: 510-513. PMID 24786077 DOI: 10.1126/Science.1252076  0.403
2014 Magnani E, de Klein N, Nam HI, Kim JG, Pham K, Fiume E, Mudgett MB, Rhee SY. A comprehensive analysis of microProteins reveals their potentially widespread mechanism of transcriptional regulation. Plant Physiology. 165: 149-59. PMID 24616380 DOI: 10.1104/Pp.114.235903  0.392
2014 Rhee SY, Mutwil M. Towards revealing the functions of all genes in plants. Trends in Plant Science. 19: 212-21. PMID 24231067 DOI: 10.1016/J.Tplants.2013.10.006  0.442
2012 Bassel GW, Gaudinier A, Brady SM, Hennig L, Rhee SY, De Smet I. Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. The Plant Cell. 24: 3859-75. PMID 23110892 DOI: 10.1105/Tpc.112.100776  0.368
2012 Chen J, Lalonde S, Obrdlik P, Noorani Vatani A, Parsa SA, Vilarino C, Revuelta JL, Frommer WB, Rhee SY. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Frontiers in Plant Science. 3: 124. PMID 22737156 DOI: 10.3389/Fpls.2012.00124  0.411
2012 Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, et al. Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Frontiers in Plant Science. 3: 15. PMID 22645570 DOI: 10.3389/Fpls.2012.00015  0.403
2012 Chae L, Lee I, Shin J, Rhee SY. Towards understanding how molecular networks evolve in plants. Current Opinion in Plant Biology. 15: 177-84. PMID 22280840 DOI: 10.1016/J.Pbi.2012.01.006  0.348
2011 Hwang S, Rhee SY, Marcotte EM, Lee I. Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network. Nature Protocols. 6: 1429-42. PMID 21886106 DOI: 10.1038/Nprot.2011.372  0.441
2010 Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, Parsa SA, Kim DY, Acharya BR, Stein EV, Hu HC, Villiers F, Takeda K, Yang Y, Han YS, ... ... Rhee SY, et al. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Frontiers in Physiology. 1: 24. PMID 21423366 DOI: 10.3389/Fphys.2010.00024  0.417
2010 Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell. 19: 765-77. PMID 21074725 DOI: 10.1016/J.Devcel.2010.10.010  0.426
2010 Zhang P, Dreher K, Karthikeyan A, Chi A, Pujar A, Caspi R, Karp P, Kirkup V, Latendresse M, Lee C, Mueller LA, Muller R, Rhee SY. Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. Plant Physiology. 153: 1479-91. PMID 20522724 DOI: 10.1104/Pp.110.157396  0.375
2010 Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, ... ... Rhee SY, et al. a web portal for plant metabolomics experiments. Plant Physiology. 152: 1807-16. PMID 20147492 DOI: 10.1104/Pp.109.151027  0.405
2010 Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nature Biotechnology. 28: 149-56. PMID 20118918 DOI: 10.1038/Nbt.1603  0.462
2008 Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA. The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. Bmc Genomics. 9: 438. PMID 18811951 DOI: 10.1186/1471-2164-9-438  0.433
2008 Rhee SY, Wood V, Dolinski K, Draghici S. Use and misuse of the gene ontology annotations. Nature Reviews. Genetics. 9: 509-15. PMID 18475267 DOI: 10.1038/Nrg2363  0.354
2008 Yoo D, Xu I, Berardini TZ, Rhee SY, Narayanasamy V, Twigger S. PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature. Current Protocols in Bioinformatics. Unit9.7. PMID 18428773 DOI: 10.1002/0471250953.Bi0907S13  0.331
2008 Reiser L, Rhee SY. Using the Arabidopsis Information Resource (TAIR) to find information about Arabidopsis genes. Current Protocols in Bioinformatics. Unit 1.11. PMID 18428741 DOI: 10.1002/0471250953.Bi0111S9  0.365
2008 Pennycooke JC, Cheng H, Roberts SM, Yang Q, Rhee SY, Stockinger EJ. The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements. Plant Molecular Biology. 67: 483-97. PMID 18415686 DOI: 10.1007/S11103-008-9333-5  0.374
2008 Lalonde S, Ehrhardt DW, Loqué D, Chen J, Rhee SY, Frommer WB. Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations. The Plant Journal : For Cell and Molecular Biology. 53: 610-35. PMID 18269572 DOI: 10.1111/J.1365-313X.2007.03332.X  0.405
2008 Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, et al. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research. 36: D449-54. PMID 18194960 DOI: 10.1093/Nar/Gkm908  0.465
2008 Harris MA, Deegan JI, Ireland A, Lomax J, Ashburner M, Tweedie S, Carbon S, Lewis S, Mungall C, Day-Richter J, Eilbeck K, Blake JA, Bult C, Diehl AD, Dolan M, ... ... Rhee SY, et al. The Gene Ontology project in 2008 Nucleic Acids Research. 36. PMID 17984083 DOI: 10.1093/Nar/Gkm883  0.377
2008 Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research. 36: D623-31. PMID 17965431 DOI: 10.1093/Nar/Gkm900  0.335
2008 Berardini TZ, Hill DP, Rhee SY, Blake JA. Homeodomain proteins in mice and plants: What we know and what we don't Developmental Biology. 319: 564. DOI: 10.1016/J.Ydbio.2008.05.343  0.314
2007 Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, ... Rhee SY, et al. The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology. 143: 587-99. PMID 17142475 DOI: 10.1104/Pp.106.092825  0.476
2007 Rhee SY, Dickerson J, Xu D. Bioinformatics and its applications in plant biology. Annual Review of Plant Biology. 57: 335-60. PMID 16669765 DOI: 10.1146/Annurev.Arplant.56.032604.144103  0.399
2007 Fiehn O, Sumner LW, Rhee SY, Ward J, Dickerson J, Lange BM, Lane G, Roessner U, Last R, Nikolau B. Minimum reporting standards for plant biology context information in metabolomic studies Metabolomics. 3: 195-201. DOI: 10.1007/S11306-007-0068-0  0.436
2006 Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology. 142: 414-28. PMID 16905665 DOI: 10.1104/Pp.106.085720  0.443
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, ... ... Rhee SY, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  0.359
2006 Li S, Ehrhardt DW, Rhee SY. Systematic analysis of Arabidopsis organelles and a protein localization database for facilitating fluorescent tagging of full-length Arabidopsis proteins. Plant Physiology. 141: 527-39. PMID 16617091 DOI: 10.1104/Pp.106.078881  0.301
2006 Zimmermann P, Schildknecht B, Craigon D, Garcia-Hernandez M, Gruissem W, May S, Mukherjee G, Parkinson H, Rhee S, Wagner U, Hennig L. MIAME/Plant - adding value to plant microarrray experiments. Plant Methods. 2: 1. PMID 16401339 DOI: 10.1186/1746-4811-2-1  0.407
2006 Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research. 34: D511-6. PMID 16381923 DOI: 10.1093/Nar/Gkj128  0.39
2005 Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F. Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comparative and Functional Genomics. 6: 388-97. PMID 18629207 DOI: 10.1002/Cfg.496  0.453
2005 Zhang P, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY. MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiology. 138: 27-37. PMID 15888675 DOI: 10.1104/Pp.105.060376  0.422
2005 Rhee SY, Crosby B. Biological databases for plant research. Plant Physiology. 138: 1-3. PMID 15888672 DOI: 10.1104/Pp.104.900158  0.341
2005 Bard J, Rhee SY, Ashburner M. An ontology for cell types. Genome Biology. 6: R21. PMID 15693950 DOI: 10.1186/Gb-2005-6-2-R21  0.358
2005 Schlueter SD, Wilkerson MD, Huala E, Rhee SY, Brendel V. Community-based gene structure annotation. Trends in Plant Science. 10: 9-14. PMID 15642518 DOI: 10.1016/J.Tplants.2004.11.002  0.361
2004 Zhang X, Fowler SG, Cheng H, Lou Y, Rhee SY, Stockinger EJ, Thomashow MF. Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 39: 905-19. PMID 15341633 DOI: 10.1111/J.1365-313X.2004.02176.X  0.459
2004 Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, ... ... Rhee SY, et al. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiology. 135: 745-55. PMID 15173566 DOI: 10.1104/Pp.104.040071  0.669
2004 Tian GW, Mohanty A, Chary SN, Li S, Paap B, Drakakaki G, Kopec CD, Li J, Ehrhardt D, Jackson D, Rhee SY, Raikhel NV, Citovsky V. High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiology. 135: 25-38. PMID 15141064 DOI: 10.1104/Pp.104.040139  0.365
2004 Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY, Stitt M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. The Plant Journal : For Cell and Molecular Biology. 37: 914-39. PMID 14996223 DOI: 10.1111/J.1365-313X.2004.02016.X  0.395
2004 Rhee SY. Carpe Diem. Retooling the "Publish or Perish" Model into the "Share and Survive" Model Plant Physiology. 134: 543-547. PMID 14966244 DOI: 10.1104/Pp.103.035907  0.352
2003 Rhee SY, Osborne E, Poindexter PD, Somerville CR. Microspore Separation in the quartet 3 Mutants of Arabidopsis Is Impaired by a Defect in a Developmentally Regulated Polygalacturonase Required for Pollen Mother Cell Wall Degradation Plant Physiology. 133: 1170-1180. PMID 14551328 DOI: 10.1104/Pp.103.028266  0.543
2003 Mueller LA, Zhang P, Rhee SY. AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiology. 132: 453-60. PMID 12805578 DOI: 10.1104/Pp.102.017236  0.386
2003 Clarke B, Lambrecht M, Rhee SY. Arabidopsis genomic information for interpreting wheat EST sequences. Functional & Integrative Genomics. 3: 33-8. PMID 12590341 DOI: 10.1007/S10142-002-0075-1  0.385
2003 Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research. 31: 224-8. PMID 12519987 DOI: 10.1093/Nar/Gkg076  0.659
2002 Garcia-Hernandez M, Berardini TZ, Chen G, Crist D, Doyle A, Huala E, Knee E, Lambrecht M, Miller N, Mueller LA, Mundodi S, Reiser L, Rhee SY, Scholl R, Tacklind J, et al. TAIR: a resource for integrated Arabidopsis data. Functional & Integrative Genomics. 2: 239-53. PMID 12444417 DOI: 10.1007/S10142-002-0077-Z  0.423
2002 Reiser L, Mueller LA, Rhee SY. Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems. Plant Molecular Biology. 48: 59-74. DOI: 10.1007/978-94-010-0448-0_5  0.325
2001 Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, ... ... Rhee SY, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Research. 29: 102-5. PMID 11125061 DOI: 10.1093/Nar/29.1.102  0.612
2000 Rhee SY. Bioinformatic resources, challenges, and opportunities, using Arabidopsis as a model organism in a post-genomic era Plant Physiology. 124: 1460-1464. PMID 11115859 DOI: 10.1104/Pp.124.4.1460  0.412
2000 Rhee SY. Paternal genomic imprinting in plants Genome Biology. 1. DOI: 10.1186/Gb-2000-1-2-Reports0054  0.381
2000 Rhee SY. Mutagenesis of a large MYB gene family in Arabidopsis Genome Biology. 1. DOI: 10.1186/Gb-2000-1-1-Reports025  0.317
1998 Rhee SY, Somerville CR. Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall Plant Journal. 15: 79-88. PMID 9744097 DOI: 10.1046/J.1365-313X.1998.00183.X  0.502
1995 Rhee SY, Somerville CR. Flat-Surface grafting in Arabidopsis thaliana Plant Molecular Biology Reporter. 13: 118-123. DOI: 10.1007/Bf02668781  0.529
1994 Preuss D, Rhee SY, Davis RW. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes. Science (New York, N.Y.). 264: 1458-60. PMID 8197459 DOI: 10.1126/Science.8197459  0.356
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