Seung Yon Rhee - Publications

Carnegie Institution for Science, USA 
systems biology, plant biology, metabolism

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Rhee SY, Parker JE, Mockler TC. A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor. Genome Biology. 17: 3. PMID 26754022 DOI: 10.1186/s13059-016-0870-y  0.4
2015 Guo J, Fan J, Hauser BA, Rhee SY. Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing. G3 (Bethesda, Md.). PMID 26530422 DOI: 10.1534/g3.115.023671  0.4
2015 Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. Bmc Bioinformatics. 16: 44. PMID 25886899 DOI: 10.1186/s12859-015-0474-7  0.4
2015 Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network. Plant Physiology. 167: 1685-98. PMID 25670818 DOI: 10.1104/pp.114.252361  0.4
2014 Jones AM, Xuan Y, Xu M, Wang RS, Ho CH, Lalonde S, You CH, Sardi MI, Parsa SA, Smith-Valle E, Su T, Frazer KA, Pilot G, Pratelli R, Grossmann G, ... ... Rhee SY, et al. Border control--a membrane-linked interactome of Arabidopsis. Science (New York, N.Y.). 344: 711-6. PMID 24833385 DOI: 10.1126/science.1251358  0.4
2014 Chae L, Kim T, Nilo-Poyanco R, Rhee SY. Genomic signatures of specialized metabolism in plants Science. 344: 510-513. PMID 24786077 DOI: 10.1126/science.1252076  0.4
2014 Rhee SY. Interview with Seung Yon Rhee. Trends in Plant Science. 19: 198-9. PMID 24630074 DOI: 10.1016/j.tplants.2014.02.007  0.4
2012 Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, et al. Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Frontiers in Plant Science. 3: 15. PMID 22645570 DOI: 10.3389/fpls.2012.00015  0.4
2011 Hwang S, Rhee SY, Marcotte EM, Lee I. Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network. Nature Protocols. 6: 1429-42. PMID 21886106 DOI: 10.1038/nprot.2011.372  0.4
2010 Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, Parsa SA, Kim DY, Acharya BR, Stein EV, Hu HC, Villiers F, Takeda K, Yang Y, Han YS, ... ... Rhee SY, et al. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Frontiers in Physiology. 1: 24. PMID 21423366 DOI: 10.3389/fphys.2010.00024  0.4
2010 Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell. 19: 765-77. PMID 21074725 DOI: 10.1016/j.devcel.2010.10.010  0.4
2010 Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, ... ... Rhee SY, et al. a web portal for plant metabolomics experiments. Plant Physiology. 152: 1807-16. PMID 20147492 DOI: 10.1104/pp.109.151027  0.4
2010 Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nature Biotechnology. 28: 149-56. PMID 20118918 DOI: 10.1038/nbt.1603  0.4
2008 Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA. The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. Bmc Genomics. 9: 438. PMID 18811951 DOI: 10.1186/1471-2164-9-438  0.4
2008 Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, et al. The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research. 36: D449-54. PMID 18194960 DOI: 10.1093/nar/gkm908  0.4
2008 Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research. 36: D623-31. PMID 17965431 DOI: 10.1093/nar/gkm900  0.4
2007 Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, ... Rhee SY, et al. The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology. 143: 587-99. PMID 17142475 DOI: 10.1104/pp.106.092825  0.4
2006 Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology. 142: 414-28. PMID 16905665 DOI: 10.1104/pp.106.085720  0.4
2006 Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research. 34: D511-6. PMID 16381923 DOI: 10.1093/nar/gkj128  0.4
2005 Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F. Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comparative and Functional Genomics. 6: 388-97. PMID 18629207 DOI: 10.1002/cfg.496  0.4
2005 Bard J, Rhee SY, Ashburner M. An ontology for cell types. Genome Biology. 6: R21. PMID 15693950 DOI: 10.1186/gb-2005-6-2-r21  0.4
2004 Zhang X, Fowler SG, Cheng H, Lou Y, Rhee SY, Stockinger EJ, Thomashow MF. Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 39: 905-19. PMID 15341633 DOI: 10.1111/j.1365-313X.2004.02176.x  0.4
2004 Tian GW, Mohanty A, Chary SN, Li S, Paap B, Drakakaki G, Kopec CD, Li J, Ehrhardt D, Jackson D, Rhee SY, Raikhel NV, Citovsky V. High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiology. 135: 25-38. PMID 15141064 DOI: 10.1104/pp.104.040139  0.4
2004 Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research. 32: D438-42. PMID 14681452 DOI: 10.1093/nar/gkh100  0.4
2003 Rhee SY, Osborne E, Poindexter PD, Somerville CR. Microspore Separation in the quartet 3 Mutants of Arabidopsis Is Impaired by a Defect in a Developmentally Regulated Polygalacturonase Required for Pollen Mother Cell Wall Degradation Plant Physiology. 133: 1170-1180. PMID 14551328 DOI: 10.1104/pp.103.028266  0.4
2003 Clarke B, Lambrecht M, Rhee SY. Arabidopsis genomic information for interpreting wheat EST sequences. Functional & Integrative Genomics. 3: 33-8. PMID 12590341 DOI: 10.1007/s10142-002-0075-1  0.4
2002 Garcia-Hernandez M, Berardini TZ, Chen G, Crist D, Doyle A, Huala E, Knee E, Lambrecht M, Miller N, Mueller LA, Mundodi S, Reiser L, Rhee SY, Scholl R, Tacklind J, et al. TAIR: a resource for integrated Arabidopsis data. Functional & Integrative Genomics. 2: 239-53. PMID 12444417 DOI: 10.1007/s10142-002-0077-z  0.4
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