| Year |
Citation |
Score |
| 2018 |
Qu Z, Titus ASCLS, Xuan Z, D'Mello SR. Neuroprotection by Heat Shock Factor-1 (HSF1) and Trimerization-Deficient Mutant Identifies Novel Alterations in Gene Expression. Scientific Reports. 8: 17255. PMID 30467350 DOI: 10.1038/S41598-018-35610-1 |
0.333 |
|
| 2017 |
Liu X, Zhang Y, Chen Y, Li M, Zhou F, Li K, Cao H, Ni M, Liu Y, Gu Z, Dickerson KE, Xie S, Hon GC, Xuan Z, Zhang MQ, et al. In Situ Capture of Chromatin Interactions by Biotinylated dCas9. Cell. 170: 1028-1043.e19. PMID 28841410 DOI: 10.1016/J.Cell.2017.08.003 |
0.576 |
|
| 2016 |
Dai Q, Bao C, Hai Y, Ma S, Zhou T, Wang C, Wang Y, Huo W, Liu X, Yao Y, Xuan Z, Chen M, Zhang MQ. MTGIpick allows robust identification of genomic islands from a single genome. Briefings in Bioinformatics. PMID 28025178 DOI: 10.1093/Bib/Bbw118 |
0.535 |
|
| 2016 |
Xu Y, Chen Y, Li D, Liu Q, Xuan Z, Li WH. TargetLink, a new method for identifying the endogenous target set of a specific microRNA in intact living cells. Rna Biology. 0. PMID 27982722 DOI: 10.1080/15476286.2016.1270006 |
0.333 |
|
| 2016 |
Lal S, Alam MM, Hooda J, Shah A, Cao TM, Xuan Z, Zhang L. The Swi3 Protein Plays a Unique Role in Regulating Aerobic Respiration in Eukaryotes. Bioscience Reports. PMID 27190130 DOI: 10.1042/Bsr20160083 |
0.371 |
|
| 2016 |
Shi X, Wang Q, Gu J, Xuan Z, Wu JI. SMARCA4/Brg1 coordinates genetic and epigenetic networks underlying Shh-type medulloblastoma development. Oncogene. PMID 27065321 DOI: 10.1038/Onc.2016.108 |
0.41 |
|
| 2016 |
Chen Y, Wang Y, Xuan Z, Chen M, Zhang MQ. De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles. Nucleic Acids Research. PMID 27060148 DOI: 10.1093/Nar/Gkw225 |
0.51 |
|
| 2015 |
Sathe A, Zhang YA, Ma X, Ray P, Cadinu D, Wang YW, Yao X, Liu X, Tang H, Wang Y, Huang Y, Liu C, Gu J, Akerman M, Mo Y, ... ... Xuan Z, et al. SCT Promoter Methylation is a Highly Discriminative Biomarker for Lung and Many Other Cancers. Ieee Life Sciences Letters. 1: 30-33. PMID 33758771 DOI: 10.1109/lls.2015.2488438 |
0.406 |
|
| 2015 |
Cao J, Dai X, Wan L, Wang H, Zhang J, Goff PS, Sviderskaya EV, Xuan Z, Xu Z, Xu X, Hinds P, Flaherty KT, Faller DV, Goding CR, Wang Y, et al. The E3 ligase APC/CCdh1 promotes ubiquitylation-mediated proteolysis of PAX3 to suppress melanocyte proliferation and melanoma growth. Science Signaling. 8: ra87. PMID 26329581 DOI: 10.1126/Scisignal.Aab1995 |
0.316 |
|
| 2015 |
Liu C, Xuan Z. Prioritization of cancer-related genomic variants by SNP association network. Cancer Informatics. 14: 57-70. PMID 25995611 DOI: 10.4137/Cin.S17288 |
0.337 |
|
| 2015 |
Sathe A, Zhang Y, Ma X, Ray P, Cadinu D, Wang Y, Yao X, Liu X, Tang H, Wang Y, Huang Y, Liu C, Gu J, Akerman M, Mo Y, ... ... Xuan Z, et al. SCT Promoter Methylation Is a Highly Discriminative Biomarker for Lung and Many Other Cancers Ieee Life Sciences Letters. 1: 30-33. DOI: 10.1109/LLS.2015.2488438 |
0.373 |
|
| 2013 |
Li J, Xuan Z, Liu C. Long non-coding RNAs and complex human diseases. International Journal of Molecular Sciences. 14: 18790-808. PMID 24036441 DOI: 10.3390/Ijms140918790 |
0.32 |
|
| 2013 |
Zhu L, Yan Z, Zhang Z, Zhou Q, Zhou J, Wakeland EK, Fang X, Xuan Z, Shen D, Li QZ. Complete genome analysis of three Acinetobacter baumannii clinical isolates in China for insight into the diversification of drug resistance elements. Plos One. 8: e66584. PMID 23826102 DOI: 10.1371/Journal.Pone.0066584 |
0.332 |
|
| 2013 |
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Xuan Z, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022 |
0.522 |
|
| 2012 |
Wen H, Li Y, Malek SN, Kim YC, Xu J, Chen P, Xiao F, Huang X, Zhou X, Xuan Z, Mankala S, Hou G, Rowley JD, Zhang MQ, Wang SM. New fusion transcripts identified in normal karyotype acute myeloid leukemia. Plos One. 7: e51203. PMID 23251452 DOI: 10.1371/Journal.Pone.0051203 |
0.474 |
|
| 2012 |
Ma X, Kulkarni A, Zhang Z, Xuan Z, Serfling R, Zhang MQ. A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information. Nucleic Acids Research. 40: e50. PMID 22228832 DOI: 10.1093/Nar/Gkr1135 |
0.462 |
|
| 2011 |
Xu XM, Wang J, Xuan Z, Goldshmidt A, Borrill PG, Hariharan N, Kim JY, Jackson D. Chaperonins facilitate KNOTTED1 cell-to-cell trafficking and stem cell function. Science (New York, N.Y.). 333: 1141-4. PMID 21868675 DOI: 10.1126/Science.1205727 |
0.313 |
|
| 2011 |
Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD, Brunet A. The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor. Oncogene. 30: 3207-21. PMID 21423206 DOI: 10.1038/Onc.2011.35 |
0.502 |
|
| 2011 |
Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE, Burbano HA, Plyusnina IZ, Trut L, Andersson L, Schöneberg T, et al. Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity. 107: 205-14. PMID 21304545 DOI: 10.1038/Hdy.2011.4 |
0.34 |
|
| 2011 |
Zhang B, Chen B, Wu T, Tan Y, Qiu S, Xuan Z, Zhu X, Chen R. Estimating the quality of reprogrammed cells using ES cell differentiation expression patterns. Plos One. 6: e15336. PMID 21283513 DOI: 10.1371/Journal.Pone.0015336 |
0.315 |
|
| 2010 |
Zheng R, Shen Z, Tripathi V, Xuan Z, Freier SM, Bennett CF, Prasanth SG, Prasanth KV. Polypurine-repeat-containing RNAs: a novel class of long non-coding RNA in mammalian cells. Journal of Cell Science. 123: 3734-44. PMID 20940252 DOI: 10.1242/Jcs.070466 |
0.339 |
|
| 2010 |
Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, Zhang MQ, Sedel F, Jourdren L, Coulpier F, Triller A, Spector DL, Bessis A. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. The Embo Journal. 29: 3082-93. PMID 20729808 DOI: 10.1038/Emboj.2010.199 |
0.514 |
|
| 2010 |
Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, et al. Targeted investigation of the Neandertal genome by array-based sequence capture. Science (New York, N.Y.). 328: 723-5. PMID 20448179 DOI: 10.1126/Science.1188046 |
0.412 |
|
| 2010 |
Rosa-Rosa JM, Gracia-Aznárez FJ, Hodges E, Pita G, Rooks M, Xuan Z, Bhattacharjee A, Brizuela L, Silva JM, Hannon GJ, Benitez J. Deep sequencing of target linkage assay-identified regions in familial breast cancer: methods, analysis pipeline and troubleshooting. Plos One. 5: e9976. PMID 20368986 DOI: 10.1371/Journal.Pone.0009976 |
0.344 |
|
| 2010 |
McFadden DG, Xuan Z, Rosebrock A, Politi K, Santiago P, Hodges E, Winslow M, Hiramatsu N, Pirun M, Crowley D, Bronson R, Socci N, Varmus H, Hannon G, Jacks T. Abstract LB-151: Targeted gene resequencing in a K-ras-dependent mouse model of metastatic lung adenocarcinoma Cancer Research. 70. DOI: 10.1158/1538-7445.Am10-Lb-151 |
0.326 |
|
| 2009 |
Bric A, Miething C, Bialucha CU, Scuoppo C, Zender L, Krasnitz A, Xuan Z, Zuber J, Wigler M, Hicks J, McCombie RW, Hemann MT, Hannon GJ, Powers S, Lowe SW. Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model. Cancer Cell. 16: 324-35. PMID 19800577 DOI: 10.1016/J.Ccr.2009.08.015 |
0.316 |
|
| 2009 |
Rosenfeld JA, Xuan Z, DeSalle R. Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3. Epigenetics : Official Journal of the Dna Methylation Society. 4: 476-86. PMID 19786836 DOI: 10.4161/Epi.4.7.9809 |
0.471 |
|
| 2009 |
Smith AD, Chung WY, Hodges E, Kendall J, Hannon G, Hicks J, Xuan Z, Zhang MQ. Updates to the RMAP short-read mapping software. Bioinformatics (Oxford, England). 25: 2841-2. PMID 19736251 DOI: 10.1093/Bioinformatics/Btp533 |
0.518 |
|
| 2009 |
Yoon S, Xuan Z, Makarov V, Ye K, Sebat J. Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Research. 19: 1586-92. PMID 19657104 DOI: 10.1101/Gr.092981.109 |
0.373 |
|
| 2009 |
Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Research. 19: 1593-605. PMID 19581485 DOI: 10.1101/Gr.095190.109 |
0.593 |
|
| 2009 |
Hodges E, Rooks M, Xuan Z, Bhattacharjee A, Benjamin Gordon D, Brizuela L, Richard McCombie W, Hannon GJ. Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing. Nature Protocols. 4: 960-74. PMID 19478811 DOI: 10.1038/Nprot.2009.68 |
0.424 |
|
| 2009 |
Kim YC, Wu Q, Chen J, Xuan Z, Jung YC, Zhang MQ, Rowley JD, Wang SM. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 8278-83. PMID 19416867 DOI: 10.1073/Pnas.0903390106 |
0.525 |
|
| 2009 |
Wang X, Xuan Z, Zhao X, Li Y, Zhang MQ. High-resolution human core-promoter prediction with CoreBoost_HM. Genome Research. 19: 266-75. PMID 18997002 DOI: 10.1101/Gr.081638.108 |
0.606 |
|
| 2008 |
Wu Q, Kim YC, Lu J, Xuan Z, Chen J, Zheng Y, Zhou T, Zhang MQ, Wu CI, Wang SM. Poly A- transcripts expressed in HeLa cells. Plos One. 3: e2803. PMID 18665230 DOI: 10.1371/Journal.Pone.0002803 |
0.579 |
|
| 2008 |
Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grützner F, Stark A, Hannon GJ. Conservation of small RNA pathways in platypus. Genome Research. 18: 995-1004. PMID 18463306 DOI: 10.1101/Gr.073056.107 |
0.328 |
|
| 2008 |
Smith AD, Xuan Z, Zhang MQ. Using quality scores and longer reads improves accuracy of Solexa read mapping. Bmc Bioinformatics. 9: 128. PMID 18307793 DOI: 10.1186/1471-2105-9-128 |
0.574 |
|
| 2008 |
Chen J, Kim YC, Jung YC, Xuan Z, Dworkin G, Zhang Y, Zhang MQ, Wang SM. Scanning the human genome at kilobase resolution. Genome Research. 18: 751-62. PMID 18292219 DOI: 10.1101/Gr.068304.107 |
0.552 |
|
| 2007 |
Hodges E, Xuan Z, Balija V, Kramer M, Molla MN, Smith SW, Middle CM, Rodesch MJ, Albert TJ, Hannon GJ, McCombie WR. Genome-wide in situ exon capture for selective resequencing. Nature Genetics. 39: 1522-7. PMID 17982454 DOI: 10.1038/Ng.2007.42 |
0.412 |
|
| 2007 |
Wang X, Bandyopadhyay S, Xuan Z, Zhao X, Zhang MQ, Zhang X. Prediction of transcription start sites based on feature selection using AMOSA. Computational Systems Bioinformatics. Computational Systems Bioinformatics Conference. 6: 183-93. PMID 17951823 |
0.434 |
|
| 2007 |
Murchison EP, Stein P, Xuan Z, Pan H, Zhang MQ, Schultz RM, Hannon GJ. Critical roles for Dicer in the female germline. Genes & Development. 21: 682-93. PMID 17369401 DOI: 10.1101/Gad.1521307 |
0.568 |
|
| 2007 |
Zhao X, Xuan Z, Zhang MQ. Boosting with stumps for predicting transcription start sites. Genome Biology. 8: R17. PMID 17274821 DOI: 10.1186/Gb-2007-8-2-R17 |
0.524 |
|
| 2007 |
Jiang C, Xuan Z, Zhao F, Zhang MQ. TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Research. 35: D137-40. PMID 17202159 DOI: 10.1093/Nar/Gkl1041 |
0.561 |
|
| 2006 |
Kim YC, Jung YC, Xuan Z, Dong H, Zhang MQ, Wang SM. Pan-genome isolation of low abundance transcripts using SAGE tag. Febs Letters. 580: 6721-9. PMID 17113583 DOI: 10.1016/J.Febslet.2006.11.013 |
0.591 |
|
| 2006 |
Das R, Dimitrova N, Xuan Z, Rollins RA, Haghighi F, Edwards JR, Ju J, Bestor TH, Zhang MQ. Computational prediction of methylation status in human genomic sequences. Proceedings of the National Academy of Sciences of the United States of America. 103: 10713-6. PMID 16818882 DOI: 10.1073/Pnas.0602949103 |
0.522 |
|
| 2006 |
Zhang C, Xuan Z, Otto S, Hover JR, McCorkle SR, Mandel G, Zhang MQ. A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome. Nucleic Acids Research. 34: 2238-46. PMID 16670430 DOI: 10.1093/Nar/Gkl248 |
0.556 |
|
| 2006 |
Smith AD, Sumazin P, Xuan Z, Zhang MQ. DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proceedings of the National Academy of Sciences of the United States of America. 103: 6275-80. PMID 16606849 DOI: 10.1073/Pnas.0508169103 |
0.594 |
|
| 2005 |
Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, Spector DL. Regulating gene expression through RNA nuclear retention. Cell. 123: 249-63. PMID 16239143 DOI: 10.1016/J.Cell.2005.08.033 |
0.497 |
|
| 2005 |
Xuan Z, Zhao F, Wang J, Chen G, Zhang MQ. Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome Biology. 6: R72. PMID 16086854 DOI: 10.1186/Gb-2005-6-8-R72 |
0.629 |
|
| 2005 |
Xuan Z, Zhang MQ. From worm to human: bioinformatics approaches to identify FOXO target genes. Mechanisms of Ageing and Development. 126: 209-15. PMID 15610780 DOI: 10.1016/J.Mad.2004.09.021 |
0.55 |
|
| 2005 |
Zhao F, Xuan Z, Liu L, Zhang MQ. TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. Nucleic Acids Research. 33: D103-7. PMID 15608156 DOI: 10.1093/Nar/Gki004 |
0.583 |
|
| 2004 |
Dike S, Balija VS, Nascimento LU, Xuan Z, Ou J, Zutavern T, Palmer LE, Hannon G, Zhang MQ, McCombie WR. The mouse genome: experimental examination of gene predictions and transcriptional start sites. Genome Research. 14: 2424-9. PMID 15574821 DOI: 10.1101/Gr.3158304 |
0.586 |
|
| 2003 |
Xuan Z, Wang J, Zhang MQ. Computational comparison of two mouse draft genomes and the human golden path. Genome Biology. 4: R1. PMID 12537546 DOI: 10.1186/Gb-2002-4-1-R1 |
0.604 |
|
| 2002 |
Carmell MA, Xuan Z, Zhang MQ, Hannon GJ. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes & Development. 16: 2733-42. PMID 12414724 DOI: 10.1101/Gad.1026102 |
0.472 |
|
| 2002 |
Xuan Z, McCombie WR, Zhang MQ. GFScan: a gene family search tool at genomic DNA level. Genome Research. 12: 1142-9. PMID 12097353 DOI: 10.1101/Gr.220102 |
0.518 |
|
| 2002 |
Bao Q, Tian Y, Li W, Xu Z, Xuan Z, Hu S, Dong W, Yang J, Chen Y, Xue Y, Xu Y, Lai X, Huang L, Dong X, Ma Y, et al. A complete sequence of the T. tengcongensis genome. Genome Research. 12: 689-700. PMID 11997336 DOI: 10.1101/Gr.219302 |
0.399 |
|
| 2002 |
Li W, Fang W, Ling L, Wang J, Xuan Z, Chen R. Phylogeny based on whole genome as inferred from complete information set analysis Journal of Biological Physics. 28: 439-447. DOI: 10.1023/A:1020316706928 |
0.369 |
|
| 2001 |
Xu H, Huang K, Qu X, Gao Z, Liu Q, Chen R, Xuan Z. Identification of selenocysteine insertion sequence (SECIS) element in eukaryotic selenoproteins by RNA Draw program Chinese Science Bulletin. 46: 1159-1161. DOI: 10.1007/Bf02900592 |
0.321 |
|
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