Matthew Hudson - Publications

Affiliations: 
Crop Sciences University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mitros T, Session AM, James BT, Wu GA, Belaffif MB, Clark LV, Shu S, Dong H, Barling A, Holmes JR, Mattick JE, Bredeson JV, Liu S, Farrar K, Głowacka K, ... ... Hudson ME, et al. Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature Communications. 11: 5442. PMID 33116128 DOI: 10.1038/s41467-020-18923-6  0.36
2020 Avalos A, Fang M, Pan H, Ramirez Lluch A, Lipka AE, Zhao SD, Giray T, Robinson GE, Zhang G, Hudson ME. Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies. Proceedings of the National Academy of Sciences of the United States of America. PMID 32631983 DOI: 10.1073/Pnas.1922927117  0.36
2018 Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Hudson M, et al. Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30425353 DOI: 10.1038/S41588-018-0293-7  0.6
2018 Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Hudson M, et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30297971 DOI: 10.1038/S41588-018-0237-2  0.6
2017 Avalos A, Pan H, Li C, Acevedo-Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE, Hudson ME, Zhang G. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nature Communications. 8: 1550. PMID 29142254 DOI: 10.1038/S41467-017-01800-0  0.36
2017 Su Z, Klein JD, DU J, Franch HA, Zhang L, Hassounah F, Hudson MB, Wang XH. Chronic kidney disease induces autophagy leading to dysfunction of mitochondria in skeletal muscle. American Journal of Physiology. Renal Physiology. ajprenal.00600.2016. PMID 28381463 DOI: 10.1152/ajprenal.00600.2016  0.4
2016 Yu N, Lee TG, Rosa DP, Hudson M, Diers BW. Impact of Rhg1 copy number, type, and interaction with Rhg4 on resistance to Heterodera glycines in soybean. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27581541 DOI: 10.1007/s00122-016-2779-y  0.52
2015 Chang HX, Domier L, Radwan O, Yendrek C, Hudson M, Hartman GL. Identification of multiple phytotoxins produced by Fusarium virguliforme including a phytotoxic effector (FvNIS1) associated with sudden death syndrome foliar symptoms. Molecular Plant-Microbe Interactions : Mpmi. PMID 26646532 DOI: 10.1094/Mpmi-09-15-0219-R  0.52
2015 Li Q, Li Y, Moose SP, Hudson ME. Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. Bmc Plant Biology. 15: 168. PMID 26139102 DOI: 10.1186/s12870-015-0549-7  0.52
2015 Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, et al. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science (New York, N.Y.). 348: 1139-43. PMID 25977371 DOI: 10.1126/Science.Aaa4788  0.52
2015 Lipka AE, Kandianis CB, Hudson ME, Yu J, Drnevich J, Bradbury PJ, Gore MA. From association to prediction: statistical methods for the dissection and selection of complex traits in plants. Current Opinion in Plant Biology. 24: 110-8. PMID 25795170 DOI: 10.1016/j.pbi.2015.02.010  0.52
2015 Hudson KA, Hudson ME. A classification of basic helix-loop-helix transcription factors of soybean. International Journal of Genomics. 2015: 603182. PMID 25763382 DOI: 10.1155/2015/603182  0.52
2015 Lee TG, Kumar I, Diers BW, Hudson ME. Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus. Molecular Ecology. 24: 1774-91. PMID 25735447 DOI: 10.1111/mec.13138  0.52
2015 Brind'Amour J, Liu S, Hudson M, Chen C, Karimi MM, Lorincz MC. An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations. Nature Communications. 6: 6033. PMID 25607992 DOI: 10.1038/ncomms7033  0.52
2014 Hudson MB, Rahnert JA, Zheng B, Woodworth-Hobbs ME, Franch HA, Price SR. miR-182 attenuates atrophy-related gene expression by targeting FoxO3 in skeletal muscle. American Journal of Physiology. Cell Physiology. 307: C314-9. PMID 24871856 DOI: 10.1152/ajpcell.00395.2013  0.36
2014 Woodworth-Hobbs ME, Hudson MB, Rahnert JA, Zheng B, Franch HA, Price SR. Docosahexaenoic acid prevents palmitate-induced activation of proteolytic systems in C2C12 myotubes. The Journal of Nutritional Biochemistry. 25: 868-74. PMID 24835079 DOI: 10.1016/j.jnutbio.2014.03.017  0.36
2014 Li Y, Varala K, Hudson ME. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science. 5: 156. PMID 24808898 DOI: 10.3389/fpls.2014.00156  0.52
2014 Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, ... ... Hudson ME, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. Bmc Genomics. 15: 86. PMID 24479613 DOI: 10.1186/1471-2164-15-86  0.52
2014 Akpertey A, Belaffif M, Graef GL, Rouf Mian MA, Grover Shannon J, Cregan PB, Hudson ME, Diers BW, Nelson RL. Effects of selective genetic introgression from wild soybean to soybean Crop Science. 54: 2683-2695. DOI: 10.2135/cropsci2014.03.0189  0.52
2014 Hudson KA, Hudson ME. The Basic Helix-Loop-Helix Transcription Factor Family in the Sacred Lotus, Nelumbo Nucifera Tropical Plant Biology. 7: 65-70. DOI: 10.1007/s12042-014-9138-4  0.52
2013 Barling A, Swaminathan K, Mitros T, James BT, Morris J, Ngamboma O, Hall MC, Kirkpatrick J, Alabady M, Spence AK, Hudson ME, Rokhsar DS, Moose SP. A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. Bmc Genomics. 14: 864. PMID 24320546 DOI: 10.1186/1471-2164-14-864  0.52
2013 Cingolani P, Cao X, Khetani RS, Chen CC, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM. Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees. Bmc Genomics. 14: 666. PMID 24079845 DOI: 10.1186/1471-2164-14-666  0.52
2013 Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, ... ... Hudson ME, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41  0.6
2012 Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/journal.pone.0047043  0.52
2012 Cook DE, Lee TG, Guo X, Melito S, Wang K, Bayless AM, Wang J, Hughes TJ, Willis DK, Clemente TE, Diers BW, Jiang J, Hudson ME, Bent AF. Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean. Science (New York, N.Y.). 338: 1206-9. PMID 23065905 DOI: 10.1126/science.1228746  0.52
2012 Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO. Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. Bmc Plant Biology. 12: 177. PMID 23031057 DOI: 10.1186/1471-2229-12-177  0.52
2012 Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP. Repeat associated small RNAs vary among parents and following hybridization in maize. Proceedings of the National Academy of Sciences of the United States of America. 109: 10444-9. PMID 22689990 DOI: 10.1073/pnas.1202073109  0.52
2012 Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. Bmc Genomics. 13: 142. PMID 22524439 DOI: 10.1186/1471-2164-13-142  0.52
2012 James BT, Chen C, Rudolph A, Swaminathan K, Murray JE, Na JK, Spence AK, Smith B, Hudson ME, Moose SP, Ming R. Development of microsatellite markers in autopolyploid sugarcane and comparative analysis of conserved microsatellites in sorghum and sugarcane Molecular Breeding. 30: 661-669. DOI: 10.1007/s11032-011-9651-1  0.52
2011 Varala K, Swaminathan K, Li Y, Hudson ME. Rapid genotyping of soybean cultivars using high throughput sequencing. Plos One. 6: e24811. PMID 21949759 DOI: 10.1371/journal.pone.0024811  0.52
2011 Li Y, Swaminathan K, Hudson ME. Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings. Plant Physiology. 156: 2124-40. PMID 21653191 DOI: 10.1104/pp.111.179416  0.52
2011 Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proceedings of the National Academy of Sciences of the United States of America. 108: 7472-7. PMID 21482769 DOI: 10.1073/Pnas.1103457108  0.52
2010 Kim KS, Hill CB, Hartman GL, Hyten DL, Hudson ME, Diers BW. Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 599-610. PMID 20454773 DOI: 10.1007/S00122-010-1333-6  0.52
2010 Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics. 185: 727-44. PMID 20421607 DOI: 10.1534/Genetics.109.113753  0.52
2010 Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. Bmc Genomics. 11: 261. PMID 20416060 DOI: 10.1186/1471-2164-11-261  0.52
2010 Toth AL, Varala K, Henshaw MT, Rodriguez-Zas SL, Hudson ME, Robinson GE. Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages. Proceedings. Biological Sciences / the Royal Society. 277: 2139-48. PMID 20236980 DOI: 10.1098/Rspb.2010.0090  0.52
2010 Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/Gb-2010-11-2-R12  0.52
2010 Kim KS, Bellendir S, Hudson KA, Hill CB, Hartman GL, Hyten DL, Hudson ME, Diers BW. Fine mapping the soybean aphid resistance gene Rag1 in soybean. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1063-71. PMID 20035316 DOI: 10.1007/S00122-009-1234-8  0.52
2010 Muellner MG, Attene-Ramos MS, Hudson ME, Wagner ED, Plewa MJ. Human cell toxicogenomic analysis of bromoacetic acid: a regulated drinking water disinfection by-product. Environmental and Molecular Mutagenesis. 51: 205-14. PMID 19753638 DOI: 10.1002/em.20530  0.52
2009 Schwarz D, Robertson HM, Feder JL, Varala K, Hudson ME, Ragland GJ, Hahn DA, Berlocher SH. Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella. Bmc Genomics. 10: 633. PMID 20035631 DOI: 10.1186/1471-2164-10-633  0.52
2009 Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO. Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats. The Plant Cell. 21: 3063-77. PMID 19820189 DOI: 10.1105/tpc.109.069856  0.4
2009 Hudson ME, Kane NC. Plant genomes do a balancing act. Molecular Ecology. 18: 2743-5. PMID 19457202 DOI: 10.1111/J.1365-294X.2009.04205.X  0.52
2009 Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiology. 150: 858-78. PMID 19386812 DOI: 10.1104/Pp.108.130757  0.52
2009 Kikis EA, Oka Y, Hudson ME, Nagatani A, Quail PH. Residues clustered in the light-sensing knot of phytochrome B are necessary for conformer-specific binding to signaling partner PIF3. Plos Genetics. 5: e1000352. PMID 19165330 DOI: 10.1371/journal.pgen.1000352  0.52
2008 Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, et al. A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biology. 9: R158. PMID 19000309 DOI: 10.1186/Gb-2008-9-11-R158  0.52
2008 Bekal S, Craig JP, Hudson ME, Niblack TL, Domier LL, Lambert KN. Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing. Molecular Genetics and Genomics : Mgg. 279: 535-43. PMID 18324416 DOI: 10.1007/s00438-008-0331-8  0.52
2008 Hudson ME. Sequencing breakthroughs for genomic ecology and evolutionary biology Molecular Ecology Resources. 8: 3-17. DOI: 10.1111/j.1471-8286.2007.02019.x  0.52
2007 Walley JW, Coughlan S, Hudson ME, Covington MF, Kaspi R, Banu G, Harmer SL, Dehesh K. Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. Plos Genetics. 3: 1800-12. PMID 17953483 DOI: 10.1371/journal.pgen.0030172  0.52
2007 Toth AL, Varala K, Newman TC, Miguez FE, Hutchison SK, Willoughby DA, Simons JF, Egholm M, Hunt JH, Hudson ME, Robinson GE. Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science (New York, N.Y.). 318: 441-4. PMID 17901299 DOI: 10.1126/Science.1146647  0.52
2007 Swaminathan K, Varala K, Hudson ME. Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey Bmc Genomics. 8. PMID 17524145 DOI: 10.1186/1471-2164-8-132  0.52
2007 Hudson ME, Bruggink T, Chang SH, Yu W, Han B, Wang X, Van Der Toorn P, Zhu T. Analysis of gene expression during Brassica seed germination using a cross-species microarray platform Crop Science. 47. DOI: 10.2135/cropsci2006.12.0758tpg  0.52
2007 Hudson M. Photoreceptor Biotechnology Light and Plant Development. 267-289. DOI: 10.1002/9780470988893.ch11  0.52
2005 Chen WJ, Chang SH, Hudson ME, Kwan WK, Li J, Estes B, Knoll D, Shi L, Zhu T. Contribution of transcriptional regulation to natural variations in Arabidopsis. Genome Biology. 6: R32. PMID 15833119 DOI: 10.1186/gb-2005-6-4-r32  0.52
2004 Huq E, Al-Sady B, Hudson M, Kim C, Apel K, Quail PH. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science (New York, N.Y.). 305: 1937-41. PMID 15448264 DOI: 10.1126/science.1099728  0.52
2004 Tepperman JM, Hudson ME, Khanna R, Zhu T, Chang SH, Wang X, Quail PH. Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. The Plant Journal : For Cell and Molecular Biology. 38: 725-39. PMID 15144375 DOI: 10.1111/j.1365-313X.2004.02084.x  0.52
2003 Hudson ME, Quail PH. Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiology. 133: 1605-16. PMID 14681527 DOI: 10.1104/pp.103.030437  0.52
2003 Hudson ME, Lisch DR, Quail PH. The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. The Plant Journal : For Cell and Molecular Biology. 34: 453-71. PMID 12753585 DOI: 10.1046/j.1365-313X.2003.01741.x  0.52
2000 Hudson ME. The genetics of phytochrome signalling in Arabidopsis Seminars in Cell and Developmental Biology. 11: 475-483. PMID 11145877 DOI: 10.1006/scdb.2000.0204  0.52
1999 Hudson M, Ringli C, Boylan MT, Quail PH. The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes & Development. 13: 2017-27. PMID 10444599 DOI: 10.1101/gad.13.15.2017  0.52
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