| Year |
Citation |
Score |
| 2023 |
Crosby KC, Rojas M, Sharma P, Johnson MA, Mazloom R, Kvitko BH, Smits THM, Venter SN, Coutinho TA, Heath LS, Palmer M, Vinatzer BA. Genomic delineation and description of species and within-species lineages in the genus . Frontiers in Microbiology. 14: 1254999. PMID 38029109 DOI: 10.3389/fmicb.2023.1254999 |
0.327 |
|
| 2023 |
Johnson MA, Vinatzer BA, Li S. Reference-Free Plant Disease Detection Using Machine Learning and Long-Read Metagenomic Sequencing. Applied and Environmental Microbiology. e0026023. PMID 37184398 DOI: 10.1128/aem.00260-23 |
0.467 |
|
| 2022 |
Johnson MA, Liu H, Bush E, Sharma P, Yang S, Mazloom R, Heath LS, Nita M, Li S, Vinatzer BA. Investigating plant disease outbreaks with long-read metagenomics: sensitive detection and highly resolved phylogenetic reconstruction applied to . Microbial Genomics. 8. PMID 35584001 DOI: 10.1099/mgen.0.000822 |
0.372 |
|
| 2022 |
Yang S, Johnson MA, Hansen MA, Bush E, Li S, Vinatzer BA. Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata. Scientific Reports. 12: 1399. PMID 35082361 DOI: 10.1038/s41598-022-05381-x |
0.338 |
|
| 2021 |
Yang S, Coleman J, Vinatzer B. Genome Resource: Draft genome of Fusarium avenaceum, strain F156N33, isolated from the atmosphere above Virginia and annotated based on RNA sequencing data. Plant Disease. PMID 34293917 DOI: 10.1094/PDIS-04-21-0787-A |
0.321 |
|
| 2020 |
Roman-Reyna V, Truchon A, Sharma P, Hand FP, Mazloom R, Vinatzer BA, Jacobs JM, Allen C. Genome Resource: Phylotype II Sequevar 1 (Race 3 Biovar 2) Strain UW848 From the 2020 U.S. Geranium Introduction. Plant Disease. PDIS06201269A. PMID 33175669 DOI: 10.1094/Pdis-06-20-1269-A |
0.358 |
|
| 2020 |
Mechan Llontop ME, Hurley K, Tian L, Bernal Galeano VA, Wildschutte HK, Marine SC, Yoder KS, Vinatzer BA. Exploring Rain as Source of Biological Control Agents for Fire Blight on Apple. Frontiers in Microbiology. 11: 199. PMID 32117187 DOI: 10.3389/fmicb.2020.00199 |
0.445 |
|
| 2020 |
Vasebi Y, Khakvar R, Tian L, Moubarak P, Valentini F, Weisberg AJ, Vinatzer BA. Phenotypic characterization and phylogenetic analysis of Pseudomonas syringae strains associated with canker disease on apricot in Iran within the context of the global genetic diversity of the P. syringae complex European Journal of Plant Pathology. 158: 545-560. DOI: 10.1007/S10658-020-02101-X |
0.328 |
|
| 2019 |
Mechan Llontop ME, Sharma P, Aguilera Flores M, Yang S, Pollock J, Tian L, Huang C, Rideout S, Heath LS, Li S, Vinatzer B. Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences. Phytopathology. PMID 31829116 DOI: 10.1094/Phyto-09-19-0351-R |
0.405 |
|
| 2019 |
Vinatzer BA, Heath LS, Almohri HMJ, Stulberg MJ, Lowe C, Li S. Cyberbiosecurity Challenges of Pathogen Genome Databases. Frontiers in Bioengineering and Biotechnology. 7: 106. PMID 31157218 DOI: 10.3389/Fbioe.2019.00106 |
0.316 |
|
| 2019 |
Balestra GM, Taratufolo MC, Vinatzer BA, Mazzaglia A. A Multiplex PCR Assay for Detection of Pseudomonas syringae pv. actinidiae and Differentiation of Populations with Different Geographic Origin. Plant Disease. 97: 472-478. PMID 30722225 DOI: 10.1094/PDIS-06-12-0590-RE |
0.334 |
|
| 2019 |
Visnovsky SB, Marroni MV, Pushparajah S, Everett KR, Taylor RK, Vinatzer BA, Pitman AR. Using multilocus sequence analysis to distinguish pathogenic from saprotrophic strains of Pseudomonas from stone fruit and kiwifruit European Journal of Plant Pathology. 155: 643-658. DOI: 10.1007/s10658-019-01799-8 |
0.304 |
|
| 2018 |
Eckshtain-Levi N, Weisberg AJ, Vinatzer BA. The population genetic test Tajima's D identifies genes encoding pathogen-associated molecular patterns and other virulence-related genes in Ralstonia solanacearum. Molecular Plant Pathology. 19: 2187-2192. PMID 29660239 DOI: 10.1111/Mpp.12688 |
0.374 |
|
| 2018 |
Markel E, Dalenberg H, Monteil CL, Vinatzer BA, Swingle B. An AlgU-regulated antisense transcript encoded within the Pseudomonas syringae fleQ gene has a positive effect on motility. Journal of Bacteriology. PMID 29311280 DOI: 10.1128/Jb.00576-17 |
0.35 |
|
| 2017 |
Clarke CR, Vinatzer BA. Characterizing the Immune-Eliciting Activity of Putative Microbe-Associated Molecular Patterns in Tomato. Methods in Molecular Biology (Clifton, N.J.). 1578: 249-261. PMID 28220431 DOI: 10.1007/978-1-4939-6859-6_21 |
0.513 |
|
| 2016 |
Sakthivel K, Gautam RK, Kumar K, Dam Roy S, Kumar A, Devendrakumar C, Vibhuti M, Neelam S, Vinatzer BA. Diversity of Ralstonia solanacearum Strains on the Andaman Islands in India. Plant Disease. 100: 732-738. PMID 30688609 DOI: 10.1094/PDIS-03-15-0258-RE |
0.307 |
|
| 2016 |
Monteil CL, Yahara K, Studholme DJ, Mageiros L, Méric G, Swingle B, Morris CE, Vinatzer BA, Sheppard SK. Population-genomic insights into emergence, crop adaptation and dissemination of Pseudomonas syringae pathogens. Microbial Genomics. 2: e000089. PMID 28348830 DOI: 10.1099/mgen.0.000089 |
0.418 |
|
| 2016 |
Clarke CR, Hayes BW, Runde BJ, Markel E, Swingle BM, Vinatzer BA. Comparative genomics of Pseudomonas syringae pathovar tomato reveals novel chemotaxis pathways associated with motility and plant pathogenicity. Peerj. 4: e2570. PMID 27812402 DOI: 10.7717/peerj.2570 |
0.547 |
|
| 2016 |
Vinatzer B, Weisberg A, Monteil CL, Elmarakeby HA, Sheppard SK, Heath LS. A proposal for a genome similarity-based taxonomy for plant pathogenic bacteria that is sufficiently precise to reflect phylogeny, host range, and outbreak affiliation applied to Pseudomonas syringae sensu lato as a proof of concept. Phytopathology. PMID 27552324 DOI: 10.1094/Phyto-07-16-0252-R |
0.426 |
|
| 2016 |
Hind SR, Strickler SR, Boyle PC, Dunham DM, Bao Z, O'Doherty IM, Baccile JA, Hoki JS, Viox EG, Clarke CR, Vinatzer BA, Schroeder FC, Martin GB. Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system. Nature Plants. 2: 16128. PMID 27548463 DOI: 10.1038/Nplants.2016.128 |
0.449 |
|
| 2016 |
Klosterman SJ, Rollins JA, Sudarshana MR, Vinatzer B. Disease Management in the Genomics Era. Phytopathology. PMID 27482626 DOI: 10.1094/PHYTO-07-16-0276-FI |
0.44 |
|
| 2015 |
Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay MC, Wicker E, Castillo JA, Vinatzer BA. Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors. Phytopathology. 105: 597-607. PMID 25710204 DOI: 10.1094/Phyto-12-14-0373-R |
0.566 |
|
| 2015 |
Bartoli C, Lamichhane JR, Berge O, Guilbaud C, Varvaro L, Balestra GM, Vinatzer BA, Morris CE. A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: The example of kiwifruit canker Molecular Plant Pathology. 16: 137-149. PMID 24986268 DOI: 10.1111/mpp.12167 |
0.35 |
|
| 2014 |
Vinatzer BA, Monteil CL, Clarke CR. Harnessing population genomics to understand how bacterial pathogens emerge, adapt to crop hosts, and disseminate. Annual Review of Phytopathology. 52: 19-43. PMID 24820995 DOI: 10.1146/annurev-phyto-102313-045907 |
0.403 |
|
| 2014 |
Clarke CR, Hayes BW, Runde BJ, Wicker E, Vinatzer BA. Eggplant and related species are promising genetic resources to dissect the plant immune response to Pseudomonas syringae and Xanthomonas euvesicatoria and to identify new resistance determinants. Molecular Plant Pathology. 15: 814-22. PMID 24684604 DOI: 10.1111/mpp.12140 |
0.405 |
|
| 2014 |
Kumar A, Prameela TP, Suseelabhai R, Siljo A, Anandaraj M, Vinatzer BA. Host specificity and genetic diversity of race 4 strains ofRalstonia solanacearum Plant Pathology. 63: 1138-1148. DOI: 10.1111/PPA.12189 |
0.304 |
|
| 2013 |
Clarke CR, Chinchilla D, Hind SR, Taguchi F, Miki R, Ichinose Y, Martin GB, Leman S, Felix G, Vinatzer BA. Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility. The New Phytologist. 200: 847-60. PMID 23865782 DOI: 10.1111/Nph.12408 |
0.502 |
|
| 2013 |
Monteil CL, Cai R, Liu H, Llontop ME, Leman S, Studholme DJ, Morris CE, Vinatzer BA. Nonagricultural reservoirs contribute to emergence and evolution of Pseudomonas syringae crop pathogens. The New Phytologist. 199: 800-11. PMID 23692644 DOI: 10.1111/Nph.12316 |
0.427 |
|
| 2013 |
Sarris PF, Trantas EA, Baltrus DA, Bull CT, Wechter WP, Yan S, Ververidis F, Almeida NF, Jones CD, Dangl JL, Panopoulos NJ, Vinatzer BA, Goumas DE. Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots. Plos One. 8: e59366. PMID 23555661 DOI: 10.1371/Journal.Pone.0059366 |
0.481 |
|
| 2012 |
Vinatzer BA. "Listening in" on how a bacterium takes over the plant vascular system. Mbio. 3: e00269-12. PMID 22967979 DOI: 10.1128/mBio.00269-12 |
0.365 |
|
| 2012 |
Mazzaglia A, Studholme DJ, Taratufolo MC, Cai R, Almeida NF, Goodman T, Guttman DS, Vinatzer BA, Balestra GM. Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. Plos One. 7: e36518. PMID 22590555 DOI: 10.1371/Journal.Pone.0036518 |
0.526 |
|
| 2012 |
Demba Diallo M, Monteil CL, Vinatzer BA, Clarke CR, Glaux C, Guilbaud C, Desbiez C, Morris CE. Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic. The Isme Journal. 6: 1325-35. PMID 22237542 DOI: 10.1038/ismej.2011.202 |
0.555 |
|
| 2012 |
Sohn KH, Saucet SB, Clarke CR, Vinatzer BA, O'Brien HE, Guttman DS, Jones JD. HopAS1 recognition significantly contributes to Arabidopsis nonhost resistance to Pseudomonas syringae pathogens. The New Phytologist. 193: 58-66. PMID 22053875 DOI: 10.1111/J.1469-8137.2011.03950.X |
0.702 |
|
| 2011 |
Jackson RW, Vinatzer B, Arnold DL, Dorus S, Murillo J. The influence of the accessory genome on bacterial pathogen evolution. Mobile Genetic Elements. 1: 55-65. PMID 22016845 DOI: 10.4161/Mge.1.1.16432 |
0.513 |
|
| 2011 |
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, Zaccardelli M, Setubal JC, Morales-Lizcano NP, Bernal A, Coaker G, ... ... Vinatzer BA, et al. The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. Plos Pathogens. 7: e1002130. PMID 21901088 DOI: 10.1371/Journal.Ppat.1002130 |
0.484 |
|
| 2011 |
Cai R, Yan S, Liu H, Leman S, Vinatzer BA. Reconstructing host range evolution of bacterial plant pathogens using Pseudomonas syringae pv. tomato and its close relatives as a model. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1738-51. PMID 21802528 DOI: 10.1016/J.Meegid.2011.07.012 |
0.593 |
|
| 2011 |
Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, et al. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. Bmc Genomics. 12: 146. PMID 21396108 DOI: 10.1186/1471-2164-12-146 |
0.437 |
|
| 2011 |
Bull CT, Clarke CR, Cai R, Vinatzer BA, Jardini TM, Koike ST. Multilocus sequence typing of Pseudomonas syringae sensu lato confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley. Phytopathology. 101: 847-58. PMID 21323469 DOI: 10.1094/PHYTO-11-10-0318 |
0.391 |
|
| 2010 |
Moreira LM, Almeida NF, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, ... ... Vinatzer BA, et al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. Bmc Genomics. 11: 238. PMID 20388224 DOI: 10.1186/1471-2164-11-238 |
0.348 |
|
| 2010 |
Bull CT, Manceau C, Lydon J, Kong H, Vinatzer BA, Fischer-Le Saux M. Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended species Pseudomonas cannabina (ex Sutic & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999. Systematic and Applied Microbiology. 33: 105-15. PMID 20227217 DOI: 10.1016/j.syapm.2010.02.001 |
0.338 |
|
| 2010 |
Almeida NF, Yan S, Cai R, Clarke CR, Morris CE, Schaad NW, Schuenzel EL, Lacy GH, Sun X, Jones JB, Castillo JA, Bull CT, Leman S, Guttman DS, Setubal JC, ... Vinatzer BA, et al. PAMDB, a multilocus sequence typing and analysis database and website for plant-associated microbes. Phytopathology. 100: 208-15. PMID 20128693 DOI: 10.1094/Phyto-100-3-0208 |
0.74 |
|
| 2010 |
Clarke CR, Cai R, Studholme DJ, Guttman DS, Vinatzer BA. Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Molecular Plant-Microbe Interactions : Mpmi. 23: 198-210. PMID 20064063 DOI: 10.1094/Mpmi-23-2-0198 |
0.608 |
|
| 2009 |
Ferrante P, Clarke CR, Cavanaugh KA, Michelmore RW, Buonaurio R, Vinatzer BA. Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Molecular Plant Pathology. 10: 837-42. PMID 19849789 DOI: 10.1111/J.1364-3703.2009.00577.X |
0.412 |
|
| 2009 |
Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT, Michelmore RW. Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiology. 150: 1733-49. PMID 19571308 DOI: 10.1104/Pp.109.140251 |
0.776 |
|
| 2009 |
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, ... ... Vinatzer BA, et al. A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Molecular Plant-Microbe Interactions : Mpmi. 22: 52-62. PMID 19061402 DOI: 10.1094/Mpmi-22-1-0052 |
0.53 |
|
| 2008 |
Vinatzer BA, Yan S. Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence. Molecular Plant Pathology. 9: 105-18. PMID 18705888 DOI: 10.1111/j.1364-3703.2007.00438.x |
0.356 |
|
| 2008 |
Yan S, Liu H, Mohr TJ, Jenrette J, Chiodini R, Zaccardelli M, Setubal JC, Vinatzer BA. Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain. Applied and Environmental Microbiology. 74: 3171-81. PMID 18378665 DOI: 10.1128/AEM.00180-08 |
0.512 |
|
| 2008 |
Mohr TJ, Liu H, Yan S, Morris CE, Castillo JA, Jelenska J, Vinatzer BA. Naturally occurring nonpathogenic isolates of the plant pathogen Pseudomonas syringae lack a type III secretion system and effector gene orthologues. Journal of Bacteriology. 190: 2858-70. PMID 18263729 DOI: 10.1128/Jb.01757-07 |
0.711 |
|
| 2008 |
Morris CE, Sands DC, Vinatzer BA, Glaux C, Guilbaud C, Buffière A, Yan S, Dominguez H, Thompson BM. The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. The Isme Journal. 2: 321-34. PMID 18185595 DOI: 10.1038/ismej.2007.113 |
0.467 |
|
| 2007 |
Jelenska J, Yao N, Vinatzer BA, Wright CM, Brodsky JL, Greenberg JT. A J domain virulence effector of Pseudomonas syringae remodels host chloroplasts and suppresses defenses. Current Biology : Cb. 17: 499-508. PMID 17350264 DOI: 10.1016/J.Cub.2007.02.028 |
0.74 |
|
| 2007 |
Vinatzer BA, Greenberg JT. Whole-genome analysis to identify type III-secreted effectors. Methods in Molecular Biology (Clifton, N.J.). 354: 19-34. PMID 17172741 DOI: 10.1385/1-59259-966-4:19 |
0.772 |
|
| 2006 |
Vinatzer BA, Teitzel GM, Lee MW, Jelenska J, Hotton S, Fairfax K, Jenrette J, Greenberg JT. The type III effector repertoire of Pseudomonas syringae pv. syringae B728a and its role in survival and disease on host and non-host plants. Molecular Microbiology. 62: 26-44. PMID 16942603 DOI: 10.1111/J.1365-2958.2006.05350.X |
0.706 |
|
| 2005 |
Vinatzer BA, Jelenska J, Greenberg JT. Bioinformatics correctly identifies many type III secretion substrates in the plant pathogen Pseudomonas syringae and the biocontrol isolate P. fluorescens SBW25. Molecular Plant-Microbe Interactions : Mpmi. 18: 877-88. PMID 16134900 DOI: 10.1094/Mpmi-18-0877 |
0.718 |
|
| 2003 |
Greenberg JT, Vinatzer BA. Identifying type III effectors of plant pathogens and analyzing their interaction with plant cells. Current Opinion in Microbiology. 6: 20-8. PMID 12615215 DOI: 10.1016/S1369-5274(02)00004-8 |
0.753 |
|
| 2002 |
Guttman DS, Vinatzer BA, Sarkar SF, Ranall MV, Kettler G, Greenberg JT. A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae. Science (New York, N.Y.). 295: 1722-6. PMID 11872842 DOI: 10.1126/Science.295.5560.1722 |
0.752 |
|
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