Michael K. Udvardi - Publications

Affiliations: 
Plant Biology The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 

128 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Roy S, Breakspear A, Cousins D, Torres-Jerez I, Jackson KJ, Kumar A, Su Y, Krom N, Liu CW, Udvardi M, Xu P, Murray JD. Three common symbiotic ABC-B transporters in Medicago truncatula are regulated by a NIN-independent branch of the symbiosis signalling pathway. Molecular Plant-Microbe Interactions : Mpmi. PMID 33779265 DOI: 10.1094/MPMI-02-21-0036-R  0.6
2021 Wang Y, Dong W, Saha MC, Udvardi MK, Kang Y. Improved node culture methods for rapid vegetative propagation of switchgrass (Panicum virgatum L.). Bmc Plant Biology. 21: 128. PMID 33663376 DOI: 10.1186/s12870-021-02903-z  0.36
2021 Zhang W, Kang Y, Cheng X, Wen J, Zhang H, Torres-Jerez I, Krom N, Udvardi MK, Scheible WR, Zhao PX. Distinguishing HapMap Accessions Through Recursive Set Partitioning in Hierarchical Decision Trees. Frontiers in Plant Science. 12: 628421. PMID 33613609 DOI: 10.3389/fpls.2021.628421  0.6
2021 Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, ... ... Udvardi M, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1  0.56
2020 Carbonnel S, Torabi S, Griesmann M, Bleek E, Tang Y, Buchka S, Basso V, Shindo M, Boyer FD, Wang TL, Udvardi M, Waters MT, Gutjahr C. Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancy. Plos Genetics. 16: e1009249. PMID 33370251 DOI: 10.1371/journal.pgen.1009249  0.56
2020 Ding N, Huertas R, Torres-Jerez, Ivone, Liu W, Watson B, Scheible WR, Udvardi M. Transcriptional, metabolic, physiological and developmental responses of switchgrass to phosphorus limitation. Plant, Cell & Environment. PMID 32822068 DOI: 10.1111/Pce.13872  0.6
2020 Mazarei M, Baxter HL, Srivastava A, Li G, Xie H, Dumitrache A, Rodriguez M, Natzke JM, Zhang JY, Turner GB, Sykes RW, Davis MF, Udvardi MK, Wang ZY, Davison BH, et al. Silencing () in Switchgrass ( L.) Improves Lignocellulosic Biofuel Production. Frontiers in Plant Science. 11: 843. PMID 32636863 DOI: 10.3389/Fpls.2020.00843  0.6
2020 Brear EM, Bedon F, Gavrin A, Kryvoruchko IS, Torres-Jerez I, Udvardi MK, Day DA, Smith PMC. GmVTL1a is an iron transporter on the symbiosome membrane of soybean with an important role in nitrogen fixation. The New Phytologist. PMID 32533710 DOI: 10.1111/Nph.16734  0.6
2020 Boschiero C, Dai X, Lundquist PK, Roy S, de Bang T, Zhang S, Zhuang Z, Torres-Jerez I, Udvardi MK, Scheible W, Zhao PX. MtSSPdb: the Medicago truncatula Small Secreted Peptide Database. Plant Physiology. PMID 32079733 DOI: 10.1104/Pp.19.01088  0.6
2019 Roy S, Liu W, Nandety RS, Crook AD, Mysore KS, Pislariu CI, Frugoli JA, Dickstein R, Udvardi MK. Celebrating 20 years of genetic discoveries in legume nodulation and symbiotic nitrogen fixation. The Plant Cell. PMID 31649123 DOI: 10.1105/Tpc.19.00279  0.6
2019 Liu CW, Breakspear A, Stacey N, Findlay K, Nakashima J, Ramakrishnan K, Liu M, Xie F, Endre G, de Carvalho-Niebel F, Oldroyd GED, Udvardi MK, Fournier J, Murray JD. A protein complex required for polar growth of rhizobial infection threads. Nature Communications. 10: 2848. PMID 31253759 DOI: 10.1038/S41467-019-10029-Y  0.6
2019 Pislariu CI, Sinharoy S, Torres-Jerez I, Nakashima J, Blancaflor EB, Udvardi MK. The nodule-specific PLAT-domain protein NPD1 is required for nitrogen-fixing symbiosis. Plant Physiology. PMID 31061106 DOI: 10.1104/Pp.18.01613  0.6
2019 Sun L, Gill US, Nandety RS, Kwon S, Mehta P, Dickstein R, Udvardi MK, Mysore KS, Wen J. Genome-wide analysis of flanking sequences reveals that Tnt1 insertion is positively correlated with gene methylation in Medicago truncatula. The Plant Journal : For Cell and Molecular Biology. PMID 30776165 DOI: 10.1111/Tpj.14291  0.6
2018 Kang Y, Torres-Jerez I, An Z, Greve V, Huhman D, Krom N, Cui Y, Udvardi M. Genome-wide association analysis of salinity responsive traits in Medicago truncatula. Plant, Cell & Environment. PMID 30593671 DOI: 10.1111/Pce.13508  0.6
2018 Kim B, Dai X, Zhang W, Zhuang Z, Sanchez DL, Lübberstedt T, Kang Y, Udvardi M, Beavis WD, Xu S, Zhao PX. GWASpro: A High-Performance Genome-Wide Association Analysis Server. Bioinformatics (Oxford, England). PMID 30508039 DOI: 10.1093/Bioinformatics/Bty989  0.56
2018 Mazarei M, Baxter HL, Li M, Biswal AK, Kim K, Meng X, Pu Y, Wuddineh WA, Zhang JY, Turner GB, Sykes RW, Davis MF, Udvardi MK, Wang ZY, Mohnen D, et al. Functional Analysis of Cellulose Synthase and Genes in Switchgrass () by Overexpression and RNAi-Mediated Gene Silencing. Frontiers in Plant Science. 9: 1114. PMID 30127793 DOI: 10.3389/Fpls.2018.01114  0.44
2018 León-Mediavilla J, Senovilla M, Montiel J, Gil-Díez P, Saez Á, Kryvoruchko IS, Reguera M, Udvardi MK, Imperial J, González-Guerrero M. MtMTP2-Facilitated Zinc Transport Into Intracellular Compartments Is Essential for Nodule Development in . Frontiers in Plant Science. 9: 990. PMID 30042781 DOI: 10.3389/Fpls.2018.00990  0.48
2018 Zuo C, Blow M, Sreedasyam A, Kuo RC, Ramamoorthy GK, Torres-Jerez I, Li G, Wang M, Dilworth D, Barry K, Udvardi M, Schmutz J, Tang Y, Xu Y. Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing. Biotechnology For Biofuels. 11: 170. PMID 29951114 DOI: 10.1186/S13068-018-1167-Z  0.6
2018 Yang J, Udvardi M. Senescence and nitrogen use efficiency in perennial grasses for forage and biofuel production. Journal of Experimental Botany. 69: 855-865. PMID 29444307 DOI: 10.1093/Jxb/Erx241  0.4
2018 Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, ... ... Udvardi MK, et al. Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis. Nature Biotechnology. PMID 29431741 DOI: 10.1038/Nbt.4067  0.44
2018 Senovilla M, Castro-Rodríguez R, Abreu I, Escudero V, Kryvoruchko I, Udvardi MK, Imperial J, González-Guerrero M. Medicago truncatula copper transporter 1 (MtCOPT1) delivers copper for symbiotic nitrogen fixation. The New Phytologist. 218: 696-709. PMID 29349810 DOI: 10.1111/Nph.14992  0.4
2017 Nelson RS, Stewart CN, Gou J, Holladay S, Gallego-Giraldo L, Flanagan A, Mann DGJ, Hisano H, Wuddineh WA, Poovaiah CR, Srivastava A, Biswal AK, Shen H, Escamilla-Treviño LL, Yang J, ... ... Udvardi M, et al. Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance. Biotechnology For Biofuels. 10: 309. PMID 29299059 DOI: 10.1186/S13068-017-0991-X  0.6
2017 Kryvoruchko IS, Routray P, Senjuti S, Torres-Jerez I, Tejada-Jiménez M, Finney LA, Nakashima J, Pislariu CI, Benedito VA, Gonzalez-Guerrero M, Roberts DM, Udvardi MK. An Iron-Activated Citrate Transporter, MtMATE67, Is Required for Symbiotic Nitrogen Fixation. Plant Physiology. PMID 29284744 DOI: 10.1104/Pp.17.01538  0.6
2017 de Bang T, Lundquist PK, Dai X, Boschiero C, Zhuang Z, Pant P, Torres-Jerez I, Roy S, Nogales J, Veerappan V, Dickstein R, Udvardi MK, Zhao PX, Scheible W. Genome-wide Identification of Medicago Peptides involved in Macronutrient Responses and Nodulation. Plant Physiology. PMID 29030416 DOI: 10.1104/Pp.17.01096  0.6
2017 Cheng X, Krom N, Zhang S, Mysore KS, Udvardi M, Wen J. Enabling Reverse Genetics in Medicago truncatula Using High-Throughput Sequencing for Tnt1 Flanking Sequence Recovery. Methods in Molecular Biology (Clifton, N.J.). 1610: 25-37. PMID 28439855 DOI: 10.1007/978-1-4939-7003-2_3  0.6
2016 Hossain MS, Shrestha A, Zhong S, Miri M, Austin RS, Sato S, Ross L, Huebert T, Tromas A, Torres-Jerez I, Tang Y, Udvardi M, Murray JD, Szczyglowski K. Lotus japonicus NF-YA1 plays an essential role during nodule differentiation and targets members of the SHI/STY gene family. Molecular Plant-Microbe Interactions : Mpmi. PMID 27929718 DOI: 10.1094/Mpmi-10-16-0206-R  0.6
2016 Willis JD, Smith JA, Mazarei M, Zhang JY, Turner GB, Decker SR, Sykes RW, Poovaiah CR, Baxter HL, Mann DG, Davis MF, Udvardi MK, Peña MJ, Backe J, Bar-Peled M, et al. Downregulation of a UDP-Arabinomutase Gene in Switchgrass (Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans. Frontiers in Plant Science. 7: 1580. PMID 27833622 DOI: 10.3389/Fpls.2016.01580  0.44
2016 Bandyopadhyay K, Uluçay O, Şakiroğlu M, Udvardi MK, Verdier J. Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume Grains. International Journal of Molecular Sciences. 17. PMID 27618017 DOI: 10.3390/Ijms17091472  0.6
2016 Yao S, Jiang C, Huang Z, Torres-Jerez I, Chang J, Zhang H, Udvardi M, Liu R, Verdier J. The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms. The Plant Journal : For Cell and Molecular Biology. PMID 27448251 DOI: 10.1111/Tpj.13279  0.6
2016 Wuddineh WA, Mazarei M, Zhang JY, Turner GB, Sykes RW, Decker SR, Davis MF, Udvardi MK, Stewart CN. Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement. Frontiers in Plant Science. 7: 520. PMID 27200006 DOI: 10.3389/Fpls.2016.00520  0.6
2016 Mus F, Crook MB, Garcia K, Garcia Costas A, Geddes BA, Kouri ED, Paramasivan P, Ryu MH, Oldroyd GE, Poole PS, Udvardi MK, Voigt CA, Ané JM, Peters JW. Symbiotic Nitrogen Fixation and Challenges to Extending it to Non-Legumes. Applied and Environmental Microbiology. PMID 27084023 DOI: 10.1128/Aem.01055-16  0.6
2016 Kryvoruchko IS, Sinharoy S, Torres-Jerez I, Sosso D, Pislariu CI, Guan D, Murray JD, Benedito VA, Frommer WB, Udvardi MK. MtSWEET11, a Nodule-Specific Sucrose Transporter of Medicago truncatula Root Nodules. Plant Physiology. PMID 27021190 DOI: 10.1104/Pp.15.01910  0.6
2016 Yang J, Worley E, Ma Q, Li J, Torres-Jerez I, Li G, Zhao PX, Xu Y, Tang Y, Udvardi M. Nitrogen remobilization and conservation, and underlying senescence-associated gene expression in the perennial switchgrass Panicum virgatum. The New Phytologist. PMID 26935010 DOI: 10.1111/Nph.13898  0.6
2016 Sinharoy S, Liu C, Breakspear A, Guan D, Shailes S, Nakashima J, Zhang S, Wen J, Torres-Jerez I, Oldroyd GE, Murray JD, Udvardi MK. A Medicago truncatula Cystathionine Beta Synthase like domain-containing protein is required for rhizobial infection and symbiotic nitrogen fixation. Plant Physiology. PMID 26884486 DOI: 10.1104/Pp.15.01853  0.6
2015 Horváth B, Domonkos Á, Kereszt A, Szűcs A, Ábrahám E, Ayaydin F, Bóka K, Chen Y, Chen R, Murray JD, Udvardi MK, Kondorosi É, Kaló P. Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant. Proceedings of the National Academy of Sciences of the United States of America. PMID 26401023 DOI: 10.1073/Pnas.1500777112  0.6
2015 Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, ... ... Udvardi M, et al. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. The New Phytologist. PMID 26171760 DOI: 10.1111/Nph.13532  0.6
2015 Breuillin-Sessoms F, Floss DS, Gomez SK, Pumplin N, Ding Y, Levesque-Tremblay V, Noar RD, Daniels DA, Bravo A, Eaglesham JB, Benedito VA, Udvardi MK, Harrison MJ. Suppression of Arbuscule Degeneration in Medicago truncatula phosphate transporter4 Mutants is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3. The Plant Cell. 27: 1352-66. PMID 25841038 DOI: 10.1105/Tpc.114.131144  0.6
2015 Tejada-Jiménez M, Castro-Rodríguez R, Kryvoruchko I, Lucas MM, Udvardi M, Imperial J, González-Guerrero M. Medicago truncatula natural resistance-associated macrophage Protein1 is required for iron uptake by rhizobia-infected nodule cells. Plant Physiology. 168: 258-72. PMID 25818701 DOI: 10.1104/Pp.114.254672  0.4
2015 Lara-Chavez A, Lowman S, Kim S, Tang Y, Zhang J, Udvardi M, Nowak J, Flinn B, Mei C. Global gene expression profiling of two switchgrass cultivars following inoculation with Burkholderia phytofirmans strain PsJN. Journal of Experimental Botany. 66: 4337-50. PMID 25788737 DOI: 10.1093/Jxb/Erv096  0.6
2015 Sinharoy S, Pislariu CI, Udvardi MK. A high-throughput RNA interference (RNAi)-based approach using hairy roots for the study of plant-rhizobia interactions. Methods in Molecular Biology (Clifton, N.J.). 1287: 159-78. PMID 25740364 DOI: 10.1007/978-1-4939-2453-0_12  0.6
2015 Kang Y, Sakiroglu M, Krom N, Stanton-Geddes J, Wang M, Lee YC, Young ND, Udvardi M. Genome-wide association of drought-related and biomass traits with HapMap SNPs in Medicago truncatula. Plant, Cell & Environment. PMID 25707512 DOI: 10.1111/Pce.12520  0.6
2015 Noguero M, Le Signor C, Vernoud V, Bandyopadhyay K, Sanchez M, Fu C, Torres-Jerez I, Wen J, Mysore KS, Gallardo K, Udvardi M, Thompson R, Verdier J. DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. The Plant Journal : For Cell and Molecular Biology. 81: 453-66. PMID 25492260 DOI: 10.1111/Tpj.12742  0.6
2015 Wuddineh WA, Mazarei M, Zhang J, Poovaiah CR, Mann DG, Ziebell A, Sykes RW, Davis MF, Udvardi MK, Stewart CN. Identification and overexpression of gibberellin 2-oxidase (GA2ox) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance. Plant Biotechnology Journal. 13: 636-47. PMID 25400275 DOI: 10.1111/Pbi.12287  0.6
2015 Sharma MK, Sharma R, Cao P, Harkenrider M, Jenkins J, Grimwood J, Zhang J, Udvardi MK, Schmutz J, Ronald PC. Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes Bioenergy Research. DOI: 10.1007/S12155-015-9667-1  0.6
2015 Yang J, Worley E, Torres-Jerez I, Miller R, Wang M, Fu C, Wang ZY, Tang Y, Udvardi M. PvNAC1 and PvNAC2 Are Associated with Leaf Senescence and Nitrogen Use Efficiency in Switchgrass Bioenergy Research. 8: 868-880. DOI: 10.1007/S12155-014-9566-X  0.6
2015 Tadege M, Chen F, Murray J, Wen J, Ratet P, Udvardi MK, Dixon RA, Mysore KS. Control of Vegetative to Reproductive Phase Transition Improves Biomass Yield and Simultaneously Reduces Lignin Content in Medicago truncatula Bioenergy Research. 8: 857-867. DOI: 10.1007/S12155-014-9565-Y  0.6
2014 Guefrachi I, Nagymihaly M, Pislariu CI, Van de Velde W, Ratet P, Mars M, Udvardi MK, Kondorosi E, Mergaert P, Alunni B. Extreme specificity of NCR gene expression in Medicago truncatula. Bmc Genomics. 15: 712. PMID 25156206 DOI: 10.1186/1471-2164-15-712  0.6
2014 Bahulikar RA, Torres-Jerez I, Worley E, Craven K, Udvardi MK. Diversity of nitrogen-fixing bacteria associated with switchgrass in the native tallgrass prairie of northern Oklahoma. Applied and Environmental Microbiology. 80: 5636-43. PMID 25002418 DOI: 10.1128/Aem.02091-14  0.6
2014 Veerappan V, Kadel K, Alexis N, Scott A, Kryvoruchko I, Sinharoy S, Taylor M, Udvardi M, Dickstein R. Keel petal incision: a simple and efficient method for genetic crossing in Medicago truncatula. Plant Methods. 10: 11. PMID 24966878 DOI: 10.1186/1746-4811-10-11  0.6
2014 Krajinski F, Courty PE, Sieh D, Franken P, Zhang H, Bucher M, Gerlach N, Kryvoruchko I, Zoeller D, Udvardi M, Hause B. The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. The Plant Cell. 26: 1808-1817. PMID 24781114 DOI: 10.1105/Tpc.113.120436  0.6
2014 Zhang JY, Cruz DE Carvalho MH, Torres-Jerez I, Kang Y, Allen SN, Huhman DV, Tang Y, Murray J, Sumner LW, Udvardi MK. Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Plant, Cell & Environment. 37: 2553-76. PMID 24661137 DOI: 10.1111/Pce.12328  0.6
2014 Gallego-Giraldo L, Bhattarai K, Pislariu CI, Nakashima J, Jikumaru Y, Kamiya Y, Udvardi MK, Monteros MJ, Dixon RA. Lignin modification leads to increased nodule numbers in alfalfa. Plant Physiology. 164: 1139-50. PMID 24406794 DOI: 10.1104/Pp.113.232421  0.6
2014 Cheng X, Wang M, Lee HK, Tadege M, Ratet P, Udvardi M, Mysore KS, Wen J. An efficient reverse genetics platform in the model legume Medicago truncatula. The New Phytologist. 201: 1065-76. PMID 24206427 DOI: 10.1111/Nph.12575  0.6
2013 Dai X, Sinharoy S, Udvardi M, Zhao PX. PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. Bmc Bioinformatics. 14: 321. PMID 24219505 DOI: 10.1186/1471-2105-14-321  0.6
2013 Sinharoy S, Torres-Jerez I, Bandyopadhyay K, Kereszt A, Pislariu CI, Nakashima J, Benedito VA, Kondorosi E, Udvardi MK. The C2H2 transcription factor regulator of symbiosome differentiation represses transcription of the secretory pathway gene VAMP721a and promotes symbiosome development in Medicago truncatula. The Plant Cell. 25: 3584-601. PMID 24082011 DOI: 10.1105/Tpc.113.114017  0.6
2013 Verdier J, Lalanne D, Pelletier S, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Vu BL, Gouzy J, Gamas P, Udvardi MK, Buitink J. A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of medicago truncatula seeds Plant Physiology. 163: 757-774. PMID 23929721 DOI: 10.1104/Pp.113.222380  0.6
2013 Wang M, Verdier J, Benedito VA, Tang Y, Murray JD, Ge Y, Becker JD, Carvalho H, Rogers C, Udvardi M, He J. LegumeGRN: a gene regulatory network prediction server for functional and comparative studies. Plos One. 8: e67434. PMID 23844010 DOI: 10.1371/Journal.Pone.0067434  0.6
2013 Pérez-Delgado CM, García-Calderón M, Sánchez DH, Udvardi MK, Kopka J, Márquez AJ, Betti M. Transcriptomic and metabolic changes associated with photorespiratory ammonium accumulation in the model legume Lotus japonicus. Plant Physiology. 162: 1834-48. PMID 23743713 DOI: 10.1104/Pp.113.217216  0.6
2013 Guan D, Stacey N, Liu C, Wen J, Mysore KS, Torres-Jerez I, Vernié T, Tadege M, Zhou C, Wang ZY, Udvardi MK, Oldroyd GE, Murray JD. Rhizobial infection is associated with the development of peripheral vasculature in nodules of Medicago truncatula. Plant Physiology. 162: 107-15. PMID 23535942 DOI: 10.1104/Pp.113.215111  0.6
2013 Verdier J, Torres-Jerez I, Wang M, Andriankaja A, Allen SN, He J, Tang Y, Murray JD, Udvardi MK. Establishment of the Lotus japonicus Gene Expression Atlas (LjGEA) and its use to explore legume seed maturation. The Plant Journal : For Cell and Molecular Biology. 74: 351-62. PMID 23452239 DOI: 10.1111/Tpj.12119  0.6
2013 Zhang JY, Lee YC, Torres-Jerez I, Wang M, Yin Y, Chou WC, He J, Shen H, Srivastava AC, Pennacchio C, Lindquist E, Grimwood J, Schmutz J, Xu Y, Sharma M, ... ... Udvardi MK, et al. Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.). The Plant Journal : For Cell and Molecular Biology. 74: 160-73. PMID 23289674 DOI: 10.1111/Tpj.12104  0.6
2013 Bourcy M, Brocard L, Pislariu CI, Cosson V, Mergaert P, Tadege M, Mysore KS, Udvardi MK, Gourion B, Ratet P. Medicago truncatula DNF2 is a PI-PLC-XD-containing protein required for bacteroid persistence and prevention of nodule early senescence and defense-like reactions. The New Phytologist. 197: 1250-61. PMID 23278348 DOI: 10.1111/Nph.12091  0.6
2012 Xu B, Sathitsuksanoh N, Tang Y, Udvardi MK, Zhang JY, Shen Z, Balota M, Harich K, Zhang PY, Zhao B. Overexpression of AtLOV1 in Switchgrass alters plant architecture, lignin content, and flowering time. Plos One. 7: e47399. PMID 23300513 DOI: 10.1371/Journal.Pone.0047399  0.56
2012 Balestrini R, Ott T, Güther M, Bonfante P, Udvardi MK, De Tullio MC. Ascorbate oxidase: the unexpected involvement of a 'wasteful enzyme' in the symbioses with nitrogen-fixing bacteria and arbuscular mycorrhizal fungi. Plant Physiology and Biochemistry : Ppb / SociéTé FrançAise De Physiologie VéGéTale. 59: 71-9. PMID 22863656 DOI: 10.1016/J.Plaphy.2012.07.006  0.56
2012 Pislariu CI, Murray JD, Wen J, Cosson V, Muni RR, Wang M, Benedito VA, Andriankaja A, Cheng X, Jerez IT, Mondy S, Zhang S, Taylor ME, Tadege M, Ratet P, ... ... Udvardi MK, et al. A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation. Plant Physiology. 159: 1686-99. PMID 22679222 DOI: 10.1104/Pp.112.197061  0.6
2012 Verdier J, Zhao J, Torres-Jerez I, Ge S, Liu C, He X, Mysore KS, Dixon RA, Udvardi MK. MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula. Proceedings of the National Academy of Sciences of the United States of America. 109: 1766-71. PMID 22307644 DOI: 10.1073/Pnas.1120916109  0.6
2012 Hakoyama T, Niimi K, Yamamoto T, Isobe S, Sato S, Nakamura Y, Tabata S, Kumagai H, Umehara Y, Brossuleit K, Petersen TR, Sandal N, Stougaard J, Udvardi MK, Tamaoki M, et al. The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules. Plant & Cell Physiology. 53: 225-36. PMID 22123791 DOI: 10.1093/Pcp/Pcr167  0.6
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  0.6
2011 Zhou C, Han L, Pislariu C, Nakashima J, Fu C, Jiang Q, Quan L, Blancaflor EB, Tang Y, Bouton JH, Udvardi M, Xia G, Wang ZY. From model to crop: functional analysis of a STAY-GREEN gene in the model legume Medicago truncatula and effective use of the gene for alfalfa improvement. Plant Physiology. 157: 1483-96. PMID 21957014 DOI: 10.1104/Pp.111.185140  0.6
2011 Han Y, Kang Y, Torres-Jerez I, Cheung F, Town CD, Zhao PX, Udvardi MK, Monteros MJ. Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis. Bmc Genomics. 12: 1-11. PMID 21733171 DOI: 10.1186/1471-2164-12-350  0.6
2011 Murray JD, Muni RR, Torres-Jerez I, Tang Y, Allen S, Andriankaja M, Li G, Laxmi A, Cheng X, Wen J, Vaughan D, Schultze M, Sun J, Charpentier M, Oldroyd G, ... ... Udvardi MK, et al. Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula. The Plant Journal : For Cell and Molecular Biology. 65: 244-52. PMID 21223389 DOI: 10.1111/J.1365-313X.2010.04415.X  0.6
2011 Kalliampakou KI, Kouri ED, Boleti H, Pavli O, Maurousset L, Udvardi MK, Katinakis P, Lemoine R, Flemetakis E. Cloning and functional characterization of LjPLT4, a plasma membrane xylitol H(+)- symporter from Lotus japonicus. Molecular Membrane Biology. 28: 1-13. PMID 21219252 DOI: 10.3109/09687688.2010.500626  0.6
2010 Becana M, Matamoros MA, Udvardi M, Dalton DA. Recent insights into antioxidant defenses of legume root nodules New Phytologist. 188: 960-976. PMID 21039567 DOI: 10.1111/J.1469-8137.2010.03512.X  0.6
2010 Díaz P, Betti M, Sánchez DH, Udvardi MK, Monza J, Márquez AJ. Deficiency in plastidic glutamine synthetase alters proline metabolism and transcriptomic response in Lotus japonicus under drought stress. The New Phytologist. 188: 1001-13. PMID 20796214 DOI: 10.1111/J.1469-8137.2010.03440.X  0.6
2010 Lefebvre B, Timmers T, Mbengue M, Moreau S, Hervé C, Tóth K, Bittencourt-Silvestre J, Klaus D, Deslandes L, Godiard L, Murray JD, Udvardi MK, Raffaele S, Mongrand S, Cullimore J, et al. A remorin protein interacts with symbiotic receptors and regulates bacterial infection. Proceedings of the National Academy of Sciences of the United States of America. 107: 2343-8. PMID 20133878 DOI: 10.1073/Pnas.0913320107  0.6
2010 Benedito VA, Li H, Dai X, Wandrey M, He J, Kaundal R, Torres-Jerez I, Gomez SK, Harrison MJ, Tang Y, Zhao PX, Udvardi MK. Genomic inventory and transcriptional analysis of Medicago truncatula transporters. Plant Physiology. 152: 1716-30. PMID 20023147 DOI: 10.1104/Pp.109.148684  0.6
2010 Barrero JM, Millar AA, Griffiths J, Czechowski T, Scheible WR, Udvardi M, Reid JB, Ross JJ, Jacobsen JV, Gubler F. Gene expression profiling identifies two regulatory genes controlling dormancy and ABA sensitivity in Arabidopsis seeds. The Plant Journal : For Cell and Molecular Biology. 61: 611-22. PMID 19947978 DOI: 10.1111/J.1365-313X.2009.04088.X  0.36
2010 Goodrich-Blair H, Ané JM, Bever JD, Bordenstein SR, Bright M, Chaston JM, Clay K, Currie CR, Douglas AE, Gerardo N, Harrison MJ, Ley RE, McFall-Ngai M, Mukherjee A, Rader B, ... ... Udvardi M, et al. Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009 Symbiosis. 51: 1-12. DOI: 10.1007/S13199-010-0076-0  0.6
2009 He J, Benedito VA, Wang M, Murray JD, Zhao PX, Tang Y, Udvardi MK. The Medicago truncatula gene expression atlas web server. Bmc Bioinformatics. 10: 441. PMID 20028527 DOI: 10.1186/1471-2105-10-441  0.6
2009 Li H, Benedito VA, Udvardi MK, Zhao PX. TransportTP: a two-phase classification approach for membrane transporter prediction and characterization. Bmc Bioinformatics. 10: 418. PMID 20003433 DOI: 10.1186/1471-2105-10-418  0.56
2009 Libault M, Joshi T, Benedito VA, Xu D, Udvardi MK, Stacey G. Legume transcription factor genes: what makes legumes so special? Plant Physiology. 151: 991-1001. PMID 19726573 DOI: 10.1104/Pp.109.144105  0.56
2009 Høgslund N, Radutoiu S, Krusell L, Voroshilova V, Hannah MA, Goffard N, Sanchez DH, Lippold F, Ott T, Sato S, Tabata S, Liboriussen P, Lohmann GV, Schauser L, Weiller GF, ... Udvardi MK, et al. Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants. Plos One. 4: e6556. PMID 19662091 DOI: 10.1371/Journal.Pone.0006556  0.56
2009 Ott T, Sullivan J, James EK, Flemetakis E, Günther C, Gibon Y, Ronson C, Udvardi M. Absence of symbiotic leghemoglobins alters bacteroid and plant cell differentiation during development of Lotus japonicus root nodules. Molecular Plant-Microbe Interactions : Mpmi. 22: 800-8. PMID 19522562 DOI: 10.1094/Mpmi-22-7-0800  0.56
2009 Kouri ED, Labrou NE, Garbis SD, Kalliampakou KI, Stedel C, Dimou M, Udvardi MK, Katinakis P, Flemetakis E. Molecular and biochemical characterization of the parvulin-type PPIases in Lotus japonicus. Plant Physiology. 150: 1160-73. PMID 19403733 DOI: 10.1104/Pp.108.132415  0.6
2009 Lippold F, Sanchez DH, Musialak M, Schlereth A, Scheible WR, Hincha DK, Udvardi MK. AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis. Plant Physiology. 149: 1761-72. PMID 19211694 DOI: 10.1104/Pp.108.134874  0.52
2009 Guether M, Balestrini R, Hannah M, He J, Udvardi MK, Bonfante P. Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. The New Phytologist. 182: 200-12. PMID 19192192 DOI: 10.1111/J.1469-8137.2008.02725.X  0.56
2009 Young ND, Udvardi M. Translating Medicago truncatula genomics to crop legumes Current Opinion in Plant Biology. 12: 193-201. PMID 19162532 DOI: 10.1016/J.Pbi.2008.11.005  0.6
2009 Gomez SK, Javot H, Deewatthanawong P, Torres-Jerez I, Tang Y, Blancaflor EB, Udvardi MK, Harrison MJ. Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis. Bmc Plant Biology. 9: 10. PMID 19161626 DOI: 10.1186/1471-2229-9-10  0.6
2008 Sanchez DH, Redestig H, Krämer U, Udvardi MK, Kopka J. Metabolome-ionome-biomass interactions: What can we learn about salt stress by multiparallel phenotyping? Plant Signaling & Behavior. 3: 598-600. PMID 19704810 DOI: 10.4161/Psb.3.8.6347  0.6
2008 Udvardi MK, Czechowski T, Scheible WR. Eleven golden rules of quantitative RT-PCR. The Plant Cell. 20: 1736-7. PMID 18664613 DOI: 10.1105/Tpc.108.061143  0.36
2008 Kakar K, Wandrey M, Czechowski T, Gaertner T, Scheible WR, Stitt M, Torres-Jerez I, Xiao Y, Redman JC, Wu HC, Cheung F, Town CD, Udvardi MK. A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods. 4: 18. PMID 18611268 DOI: 10.1186/1746-4811-4-18  0.6
2008 Verdier J, Kakar K, Gallardo K, Le Signor C, Aubert G, Schlereth A, Town CD, Udvardi MK, Thompson RD. Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Molecular Biology. 67: 567-80. PMID 18528765 DOI: 10.1007/S11103-008-9320-X  0.6
2008 Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, ... ... Udvardi MK, et al. A gene expression atlas of the model legume Medicago truncatula. The Plant Journal : For Cell and Molecular Biology. 55: 504-13. PMID 18410479 DOI: 10.1111/J.1365-313X.2008.03519.X  0.6
2008 Ruffel S, Freixes S, Balzergue S, Tillard P, Jeudy C, Martin-Magniette ML, van der Merwe MJ, Kakar K, Gouzy J, Fernie AR, Udvardi M, Salon C, Gojon A, Lepetit M. Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula. Plant Physiology. 146: 2020-35. PMID 18287487 DOI: 10.1104/Pp.107.115667  0.6
2008 D'Antuono AL, Ott T, Krusell L, Voroshilova V, Ugalde RA, Udvardi M, Lepek VC. Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development. Molecular Plant-Microbe Interactions : Mpmi. 21: 50-60. PMID 18052882 DOI: 10.1094/Mpmi-21-1-0050  0.56
2008 Sanchez DH, Lippold F, Redestig H, Hannah MA, Erban A, Krämer U, Kopka J, Udvardi MK. Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. The Plant Journal : For Cell and Molecular Biology. 53: 973-87. PMID 18047558 DOI: 10.1111/J.1365-313X.2007.03381.X  0.6
2007 Günther C, Schlereth A, Udvardi M, Ott T. Metabolism of reactive oxygen species is attenuated in leghemoglobin-deficient nodules of Lotus japonicus. Molecular Plant-Microbe Interactions : Mpmi. 20: 1596-603. PMID 17990967 DOI: 10.1094/Mpmi-20-12-1596  0.56
2007 Udvardi MK, Kakar K, Wandrey M, Montanari O, Murray J, Andriankaja A, Zhang JY, Benedito V, Hofer JM, Chueng F, Town CD. Legume transcription factors: global regulators of plant development and response to the environment. Plant Physiology. 144: 538-49. PMID 17556517 DOI: 10.1104/Pp.107.098061  0.56
2007 Hernández G, Ramírez M, Valdés-López O, Tesfaye M, Graham MA, Czechowski T, Schlereth A, Wandrey M, Erban A, Cheung F, Wu HC, Lara M, Town CD, Kopka J, Udvardi MK, et al. Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiology. 144: 752-67. PMID 17449651 DOI: 10.1104/Pp.107.096958  0.6
2007 Morcuende R, Bari R, Gibon Y, Zheng W, Pant BD, Bläsing O, Usadel B, Czechowski T, Udvardi MK, Stitt M, Scheible WR. Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant, Cell & Environment. 30: 85-112. PMID 17177879 DOI: 10.1111/J.1365-3040.2006.01608.X  0.36
2006 Benedito VA, Dai X, He J, Zhao PX, Udvardi MK. Functional genomics of plant transporters in legume nodules. Functional Plant Biology : Fpb. 33: 731-736. PMID 32689283 DOI: 10.1071/Fp06085  0.56
2006 Flemetakis E, Efrose RC, Ott T, Stedel C, Aivalakis G, Udvardi MK, Katinakis P. Spatial and temporal organization of sucrose metabolism in Lotus japonicus nitrogen-fixing nodules suggests a role for the elusive alkaline/neutral invertase. Plant Molecular Biology. 62: 53-69. PMID 16897473 DOI: 10.1007/S11103-006-9003-4  0.56
2006 Wood CC, Porée F, Dreyer I, Koehler GJ, Udvardi MK. Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1;1. Febs Letters. 580: 3931-6. PMID 16806203 DOI: 10.1016/J.Febslet.2006.06.026  0.6
2006 Domoney C, Duc G, Ellis TH, Ferrándiz C, Firnhaber C, Gallardo K, Hofer J, Kopka J, Küster H, Madueño F, Munier-Jolain NG, Mayer K, Thompson R, Udvardi M, Salon C. Genetic and genomic analysis of legume flowers and seeds. Current Opinion in Plant Biology. 9: 133-41. PMID 16480914 DOI: 10.1016/J.Pbi.2006.01.014  0.6
2005 McGrath KC, Dombrecht B, Manners JM, Schenk PM, Edgar CI, Maclean DJ, Scheible WR, Udvardi MK, Kazan K. Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiology. 139: 949-59. PMID 16183832 DOI: 10.1104/Pp.105.068544  0.36
2005 Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology. 139: 5-17. PMID 16166256 DOI: 10.1104/Pp.105.063743  0.36
2005 Udvardi MK, Scheible WR. Plant science. GRAS genes and the symbiotic green revolution. Science (New York, N.Y.). 308: 1749-50. PMID 15961658 DOI: 10.1126/Science.1114217  0.36
2005 Oldroyd GE, Harrison MJ, Udvardi M. Peace talks and trade deals. Keys to long-term harmony in legume-microbe symbioses. Plant Physiology. 137: 1205-10. PMID 15824283 DOI: 10.1104/Pp.104.057661  0.52
2005 Krusell L, Krause K, Ott T, Desbrosses G, Krämer U, Sato S, Nakamura Y, Tabata S, James EK, Sandal N, Stougaard J, Kawaguchi M, Miyamoto A, Suganuma N, Udvardi MK. The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. The Plant Cell. 17: 1625-36. PMID 15805486 DOI: 10.1105/Tpc.104.030106  0.56
2005 Ott T, van Dongen JT, Günther C, Krusell L, Desbrosses G, Vigeolas H, Bock V, Czechowski T, Geigenberger P, Udvardi MK. Symbiotic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development. Current Biology : Cb. 15: 531-5. PMID 15797021 DOI: 10.1016/J.Cub.2005.01.042  0.56
2005 Ott T, Krusell L, Udvardi M. RNA isolation using CsCl gradients Lotus Japonicus Handbook. 125-128. DOI: 10.1007/1-4020-3735-X_10  0.6
2004 Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiology. 136: 2483-99. PMID 15375205 DOI: 10.1104/Pp.104.047019  0.36
2004 Colebatch G, Desbrosses G, Ott T, Krusell L, Montanari O, Kloska S, Kopka J, Udvardi MK. Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. The Plant Journal : For Cell and Molecular Biology. 39: 487-512. PMID 15272870 DOI: 10.1111/J.1365-313X.2004.02150.X  0.56
2004 Desbrosses G, Kopka C, Ott T, Udvardi MK. Lotus japonicus LjKUP is induced late during nodule development and encodes a potassium transporter of the plasma membrane. Molecular Plant-Microbe Interactions : Mpmi. 17: 789-97. PMID 15242173 DOI: 10.1094/Mpmi.2004.17.7.789  0.56
2004 Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK. Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. The Plant Journal : For Cell and Molecular Biology. 38: 366-79. PMID 15078338 DOI: 10.1111/J.1365-313X.2004.02051.X  0.36
2002 Sohlenkamp C, Wood CC, Roeb GW, Udvardi MK. Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane Plant Physiology. 130: 1788-1796. PMID 12481062 DOI: 10.1104/Pp.008599  0.6
2002 Moreau S, Thomson RM, Kaiser BN, Trevaskis B, Guerinot ML, Udvardi MK, Puppo A, Day DA. GmZIP1 encodes a symbiosis-specific zinc transporter in soybean. The Journal of Biological Chemistry. 277: 4738-46. PMID 11706025 DOI: 10.1074/Jbc.M106754200  0.6
1999 Fedorova E, Thomson R, Whitehead LF, Maudoux O, Udvardi MK, Day DA. Localization of H(+)-ATPases in soybean root nodules. Planta. 209: 25-32. PMID 10467028 DOI: 10.1007/S004250050603  0.6
1998 Kaiser BN, Finnegan PM, Tyerman SD, Whitehead LF, Bergersen FJ, Day DA, Udvardi MK. Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules. Science (New York, N.Y.). 281: 1202-6. PMID 9712587 DOI: 10.1126/Science.281.5380.1202  0.6
1997 Udvardi MK, Day DA. METABOLITE TRANSPORT ACROSS SYMBIOTIC MEMBRANES OF LEGUME NODULES. Annual Review of Plant Physiology and Plant Molecular Biology. 48: 493-523. PMID 15012272 DOI: 10.1146/annurev.arplant.48.1.493  0.6
1993 Udvardi MK, McDermott TR, Kahn ML. Isolation and characterization of a cDNA encoding NADP+-specific isocitrate dehydrogenase from soybean (Glycine max) Plant Molecular Biology. 21: 739-752. PMID 8467073 DOI: 10.1007/Bf00027108  0.6
1992 Udvardi MK, Lister DL, Day DA. Isolation and characterization of a ntrC mutant of Bradyrhizobium (Parasponia) sp. ANU289. Journal of General Microbiology. 138: 1019-25. PMID 1353784 DOI: 10.1099/00221287-138-5-1019  0.6
1991 Udvardi MK, Kahn ML. Isolation and analysis of a cDNA clone that encodes an alfalfa (Medicago sativa) aspartate aminotransferase Mgg Molecular &Amp; General Genetics. 231: 97-105. PMID 1753949 DOI: 10.1007/Bf00293827  0.6
1991 Udvardi MK, Lister DL, Day DA. ATPase activity and anion transport across the peribacteroid membrane of isolated soybean symbiosomes Archives of Microbiology. 156: 362-366. DOI: 10.1007/Bf00248711  0.6
1990 Ou Yang LJ, Udvardi MK, Day DA. Specificity and regulation of the dicarboxylate carrier on the peribacteroid membrane of soybean nodules. Planta. 182: 437-44. PMID 24197196 DOI: 10.1007/Bf02411397  0.48
1990 Udvardi MK, Day DA. Ammonia (C-Methylamine) Transport across the Bacteroid and Peribacteroid Membranes of Soybean Root Nodules. Plant Physiology. 94: 71-6. PMID 16667721 DOI: 10.1104/Pp.94.1.71  0.48
1989 Udvardi MK, Day DA. Electrogenic ATPase Activity on the Peribacteroid Membrane of Soybean (Glycine max L.) Root Nodules. Plant Physiology. 90: 982-7. PMID 16666909 DOI: 10.1104/Pp.90.3.982  0.48
1986 Udvardi MK, Day DA, Gresshoff PM. Stimulation of respiration and nitrogenase in bacteroids of Siratro (Macroptilium atropurpureum) by plant nodule cytosol. Plant Cell Reports. 5: 207-9. PMID 24248134 DOI: 10.1007/Bf00269120  0.48
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