| Year |
Citation |
Score |
| 2020 |
Casanova NG, Zhou T, Gonzalez-Garay M, Lussier YA, Sweiss N, Ma SF, Noth I, Knox KS, Garcia JGN. MicroRNA and Protein-Coding Gene Expression Analysis in Idiopathic Pulmonary Fibrosis Yields Novel Biomarker Signatures Associated to Survival. Translational Research : the Journal of Laboratory and Clinical Medicine. PMID 32711186 DOI: 10.1016/J.Trsl.2020.07.009 |
0.335 |
|
| 2019 |
Rachid Zaim S, Kenost C, Berghout J, Vitali F, Zhang HH, Lussier YA. Evaluating single-subject study methods for personal transcriptomic interpretations to advance precision medicine. Bmc Medical Genomics. 12: 96. PMID 31296218 DOI: 10.1186/S12920-019-0513-8 |
0.32 |
|
| 2019 |
Schissler AG, Aberasturi D, Kenost C, Lussier YA. A Single-Subject Method to Detect Pathways Enriched With Alternatively Spliced Genes. Frontiers in Genetics. 10: 414. PMID 31143202 DOI: 10.3389/Fgene.2019.00414 |
0.35 |
|
| 2019 |
Yang X, Lee Y, Fan H, Sun X, Lussier YA. Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. Chinese Science Bulletin = Kexue Tongbao. 55: 3576-3589. PMID 21340045 DOI: 10.1007/S11434-010-4051-1 |
0.314 |
|
| 2017 |
Fan JW, Lussier YA. Word-of-Mouth Innovation: Hypothesis Generation for Supplement Repurposing based on Consumer Reviews. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 689-695. PMID 29854134 |
0.448 |
|
| 2017 |
Vitali F, Li Q, Schissler AG, Berghout J, Kenost C, Lussier YA. Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. Briefings in Bioinformatics. PMID 29272327 DOI: 10.1093/Bib/Bbx149 |
0.333 |
|
| 2017 |
Fan JW, Li J, Lussier YA. Semantic Modeling for Exposomics with Exploratory Evaluation in Clinical Context. Journal of Healthcare Engineering. 2017: 3818302. PMID 29065591 DOI: 10.1155/2017/3818302 |
0.548 |
|
| 2017 |
Zhou T, Casanova N, Pouladi N, Wang T, Lussier Y, Knox KS, Garcia JGN. Identification of Jak-STAT signaling involvement in sarcoidosis severity via a novel microRNA-regulated peripheral blood mononuclear cell gene signature. Scientific Reports. 7: 4237. PMID 28652588 DOI: 10.1038/S41598-017-04109-6 |
0.308 |
|
| 2017 |
Li Q, Schissler AG, Gardeux V, Achour I, Kenost C, Berghout J, Li H, Zhang HH, Lussier YA. N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes. Bmc Medical Genomics. 10: 27. PMID 28589853 DOI: 10.1186/S12920-017-0263-4 |
0.31 |
|
| 2017 |
Schissler AG, Piegorsch WW, Lussier YA. Testing for differentially expressed genetic pathways with single-subject N-of-1 data in the presence of inter-gene correlation. Statistical Methods in Medical Research. 962280217712271. PMID 28552011 DOI: 10.1177/0962280217712271 |
0.308 |
|
| 2016 |
Li H, Achour I, Bastarache L, Berghout J, Gardeux V, Li J, Lee Y, Pesce L, Yang X, Ramos KS, Foster I, Denny JC, Moore JH, Lussier YA. Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions. Npj Genomic Medicine. 1. PMID 27482468 DOI: 10.1038/Npjgenmed.2016.6 |
0.317 |
|
| 2016 |
Pouladi N, Bime C, Garcia JG, Lussier YA. Complex genetics of pulmonary diseases: lessons from genome-wide association studies and next-generation sequencing. Translational Research : the Journal of Laboratory and Clinical Medicine. 168: 22-39. PMID 26006746 DOI: 10.1016/J.Trsl.2015.04.016 |
0.325 |
|
| 2015 |
Huang Y, Ma SF, Vij R, Oldham JM, Herazo-Maya J, Broderick SM, Strek ME, White SR, Hogarth DK, Sandbo NK, Lussier YA, Gibson KF, Kaminski N, Garcia JG, Noth I. A functional genomic model for predicting prognosis in idiopathic pulmonary fibrosis. Bmc Pulmonary Medicine. 15: 147. PMID 26589497 DOI: 10.1186/S12890-015-0142-8 |
0.302 |
|
| 2015 |
Li H, Pouladi N, Achour I, Gardeux V, Li J, Li Q, Zhang HH, Martinez FD, 'Skip' Garcia JG, Lussier YA. eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. Journal of Biomedical Informatics. PMID 26524128 DOI: 10.1016/J.Jbi.2015.10.010 |
0.304 |
|
| 2015 |
Schissler AG, Gardeux V, Li Q, Achour I, Li H, Piegorsch WW, Lussier YA. Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. Bioinformatics (Oxford, England). 31: i293-i302. PMID 26072495 DOI: 10.1093/Bioinformatics/Btv253 |
0.3 |
|
| 2014 |
Gardeux V, Arslan AD, Achour I, Ho TT, Beck WT, Lussier YA. Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study Bmc Medical Genomics. 7. PMID 25079003 DOI: 10.1186/1755-8794-7-S1-S1 |
0.333 |
|
| 2014 |
Maienschein-Cline M, Lei Z, Gardeux V, Abbasi T, Machado RF, Gordeuk V, Desai AA, Saraf S, Bahroos N, Lussier Y. ARTS: automated randomization of multiple traits for study design. Bioinformatics (Oxford, England). 30: 1637-9. PMID 24493035 DOI: 10.1093/Bioinformatics/Btu075 |
0.301 |
|
| 2013 |
Chen JL, Hsu A, Yang X, Li J, Lee Y, Parinandi G, Li H, Lussier YA. Curation-free biomodules mechanisms in prostate cancer predict recurrent disease. Bmc Medical Genomics. 6: S4. PMID 23819917 DOI: 10.1186/1755-8794-6-S2-S4 |
0.318 |
|
| 2013 |
Payne PR, Pressler TR, Sarkar IN, Lussier Y. People, organizational, and leadership factors impacting informatics support for clinical and translational research. Bmc Medical Informatics and Decision Making. 13: 20. PMID 23388243 DOI: 10.1186/1472-6947-13-20 |
0.318 |
|
| 2013 |
Lee Y, Li H, Li J, Rebman E, Achour I, Regan KE, Gamazon ER, Chen JL, Yang XH, Cox NJ, Lussier YA. Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. Journal of the American Medical Informatics Association : Jamia. 20: 619-29. PMID 23355459 DOI: 10.1136/Amiajnl-2012-001519 |
0.315 |
|
| 2012 |
Lussier YA, Li H. Breakthroughs in genomics data integration for predicting clinical outcome. Journal of Biomedical Informatics. 45: 1199-201. PMID 23117078 DOI: 10.1016/J.Jbi.2012.10.003 |
0.309 |
|
| 2012 |
Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA. Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. Journal of the American Medical Informatics Association : Jamia. 19: 306-16. PMID 22319180 DOI: 10.1136/Amiajnl-2011-000656 |
0.325 |
|
| 2012 |
Yang X, Regan K, Huang Y, Zhang Q, Li J, Seiwert TY, Cohen EE, Xing HR, Lussier YA. Single sample expression-anchored mechanisms predict survival in head and neck cancer. Plos Computational Biology. 8: e1002350. PMID 22291585 DOI: 10.1371/Journal.Pcbi.1002350 |
0.334 |
|
| 2012 |
Lussier YA, Stadler WM, Chen JL. Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. Journal of the American Medical Informatics Association : Jamia. 19: 156-60. PMID 22101905 DOI: 10.1136/Amiajnl-2011-000419 |
0.328 |
|
| 2012 |
Zhang Q, Yang X, Shen J, Salama JK, Khodarev N, Hasselle MD, Huang Y, Fan H, Khan SA, Darga TE, Hoffma RM, Chmura S, Lussier YA, Weichselbaum RR, Xing RH. Abstract 1369: Mouse models of clinical oligo- and poly-metastatic progression Cancer Research. 72: 1369-1369. DOI: 10.1158/1538-7445.Am2012-1369 |
0.304 |
|
| 2011 |
Lussier YA, Chen JL. The emergence of genome-based drug repositioning. Science Translational Medicine. 3: 96ps35. PMID 21849663 DOI: 10.1126/Scitranslmed.3001512 |
0.318 |
|
| 2011 |
Sarkar IN, Butte AJ, Lussier YA, Tarczy-Hornoch P, Ohno-Machado L. Translational bioinformatics: linking knowledge across biological and clinical realms. Journal of the American Medical Informatics Association : Jamia. 18: 354-7. PMID 21561873 DOI: 10.1136/Amiajnl-2011-000245 |
0.349 |
|
| 2011 |
Godley LA, Cunningham J, Dolan ME, Huang RS, Gurbuxani S, McNerney ME, Larson RA, Leong H, Lussier Y, Onel K, Odenike O, Stock W, White KP, Le Beau MM. An integrated genomic approach to the assessment and treatment of acute myeloid leukemia. Seminars in Oncology. 38: 215-24. PMID 21421111 DOI: 10.1053/J.Seminoncol.2011.01.003 |
0.329 |
|
| 2010 |
Borlawsky TB, Li J, Shagina L, Crowson MG, Liu Y, Friedman C, Lussier YA. Evaluation of an Ontology-anchored Natural Language-based Approach for Asserting Multi-scale Biomolecular Networks for Systems Medicine. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2010: 6-10. PMID 21347135 |
0.542 |
|
| 2010 |
Lussier YA, Butte AJ, Hunter L. Current methodologies for translational bioinformatics. Journal of Biomedical Informatics. 43: 355-7. PMID 20470899 DOI: 10.1016/J.Jbi.2010.05.002 |
0.348 |
|
| 2010 |
Lee Y, Yang X, Huang Y, Fan H, Zhang Q, Wu Y, Li J, Hasina R, Cheng C, Lingen MW, Gerstein MB, Weichselbaum RR, Xing HR, Lussier YA. Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. Plos Computational Biology. 6: e1000730. PMID 20369013 DOI: 10.1371/Journal.Pcbi.1000730 |
0.313 |
|
| 2010 |
Chen J, Sam L, Huang Y, Lee Y, Li J, Liu Y, Xing HR, Lussier YA. Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. Journal of Biomedical Informatics. 43: 385-96. PMID 20350617 DOI: 10.1016/J.Jbi.2010.03.009 |
0.335 |
|
| 2009 |
Pantazatos SP, Li J, Pavlidis P, Lussier YA. Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Cancer Informatics. 8: 75-94. PMID 20495688 DOI: 10.4137/Cin.S1046 |
0.347 |
|
| 2009 |
Yang X, Huang Y, Chen JL, Xie J, Sun X, Lussier YA. Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. Bmc Bioinformatics. 10: S6. PMID 19761576 DOI: 10.1186/1471-2105-10-S9-S6 |
0.307 |
|
| 2009 |
Sam LT, Mendonça EA, Li J, Blake J, Friedman C, Lussier YA. PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. Bmc Bioinformatics. 10: S8. PMID 19208196 DOI: 10.1186/1471-2105-10-S2-S8 |
0.585 |
|
| 2007 |
Sam L, Borlawsky T, Tao Y, Li J, Friedman C, Smith B, Lussier YA. Information-theoretic classification of SNOMED improves the organization of context-sensitive excerpts from Cochrane reviews. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1100. PMID 18694197 |
0.508 |
|
| 2007 |
Chen ES, Stetson PD, Lussier YA, Markatou M, Hripcsak G, Friedman C. Detection of practice pattern trends through Natural Language Processing of clinical narratives and biomedical literature. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 120-4. PMID 18693810 |
0.491 |
|
| 2007 |
Sam L, Liu Y, Li J, Friedman C, Lussier YA. Discovery of protein interaction networks shared by diseases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 76-87. PMID 17992746 |
0.466 |
|
| 2007 |
Tao Y, Sam L, Li J, Friedman C, Lussier YA. Information theory applied to the sparse gene ontology annotation network to predict novel gene function. Bioinformatics (Oxford, England). 23: i529-38. PMID 17646340 DOI: 10.1093/bioinformatics/btm195 |
0.5 |
|
| 2007 |
Chen JL, Liu Y, Sam LT, Li J, Lussier YA. Evaluation of high-throughput functional categorization of human disease genes. Bmc Bioinformatics. 8: S7. PMID 17493290 DOI: 10.1186/1471-2105-8-S3-S7 |
0.342 |
|
| 2007 |
Tulipano PK, Tao Y, Millar WS, Zanzonico P, Kolbert K, Xu H, Yu H, Chen L, Lussier YA, Friedman C. Natural language processing and visualization in the molecular imaging domain. Journal of Biomedical Informatics. 40: 270-81. PMID 17084109 DOI: 10.1016/J.Jbi.2006.08.002 |
0.728 |
|
| 2006 |
Borlawsky T, Friedman C, Lussier YA. Generating executable knowledge for evidence-based medicine using natural language and semantic processing. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 56-60. PMID 17238302 |
0.51 |
|
| 2006 |
Liu Y, Li J, Sam L, Goh CS, Gerstein M, Lussier YA. An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits. Plos Computational Biology. 2: e159. PMID 17112314 DOI: 10.1371/Journal.Pcbi.0020159 |
0.356 |
|
| 2006 |
Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C. PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 64-75. PMID 17094228 |
0.555 |
|
| 2006 |
Goh CS, Gianoulis TA, Liu Y, Li J, Paccanaro A, Lussier YA, Gerstein M. Integration of curated databases to identify genotype-phenotype associations. Bmc Genomics. 7: 257. PMID 17038185 DOI: 10.1186/1471-2164-7-257 |
0.364 |
|
| 2006 |
Friedman C, Borlawsky T, Shagina L, Xing HR, Lussier YA. Bio-Ontology and text: bridging the modeling gap. Bioinformatics (Oxford, England). 22: 2421-9. PMID 16870928 DOI: 10.1093/Bioinformatics/Btl405 |
0.584 |
|
| 2006 |
Zhou L, Tao Y, Cimino JJ, Chen ES, Liu H, Lussier YA, Hripcsak G, Friedman C. Terminology model discovery using natural language processing and visualization techniques. Journal of Biomedical Informatics. 39: 626-36. PMID 16360342 DOI: 10.1016/J.Jbi.2005.10.006 |
0.543 |
|
| 2005 |
Tulipano PK, Tao Y, Zanzonico P, Kolbert K, Lussier Y, Friedman C. Natural language processing in the molecular imaging domain. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1143. PMID 16779429 |
0.733 |
|
| 2005 |
Tao Y, Friedman C, Lussier YA. Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics (Oxford, England). 21: 1659-67. PMID 15598839 DOI: 10.1093/Bioinformatics/Bti210 |
0.568 |
|
| 2004 |
Tao Y, Liu Y, Friedman C, Lussier YA. Information Visualization Techniques in Bioinformatics during the Postgenomic Era. Drug Discovery Today. Biosilico. 2: 237-245. PMID 20976032 DOI: 10.1016/S1741-8364(04)02423-0 |
0.534 |
|
| 2004 |
Friedman C, Shagina L, Lussier Y, Hripcsak G. Automated encoding of clinical documents based on natural language processing. Journal of the American Medical Informatics Association : Jamia. 11: 392-402. PMID 15187068 DOI: 10.1197/Jamia.M1552 |
0.526 |
|
| 2004 |
Cantor MN, Lussier YA. Mining OMIM™ for insight into complex diseases Studies in Health Technology and Informatics. 107: 753-757. DOI: 10.3233/978-1-60750-949-3-753 |
0.364 |
|
| 2004 |
Wang X, Quek HN, Cantor M, Kra P, Schultz A, Lussier YA. Automated Terminology Networks for the Integration of Heterogeneous Databases Studies in Health Technology and Informatics. 107: 555-559. DOI: 10.3233/978-1-60750-949-3-555 |
0.32 |
|
| 2004 |
Tao Y, Mendonça EA, Lussier YA. A tool for abstracting relevant classes of concepts: the Common Ancestry Summarizer. Studies in Health Technology and Informatics. 107: 449-453. DOI: 10.3233/978-1-60750-949-3-449 |
0.317 |
|
| 2001 |
Liu H, Lussier YA, Friedman C. Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method. Journal of Biomedical Informatics. 34: 249-61. PMID 11977807 DOI: 10.1006/Jbin.2001.1023 |
0.526 |
|
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