Ying Wang - Publications

Affiliations: 
Mississippi State University 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Xu T, Xiong M, Hong Q, Pan B, Xu M, Wang Y, Sun Y, Sun H, Pan Y, Wang S, He B. Hsa_circ_0007990 promotes breast cancer growth via inhibiting YBX1 protein degradation to activate E2F1 transcription. Cell Death & Disease. 15: 153. PMID 38378679 DOI: 10.1038/s41419-024-06527-7  0.32
2023 Ma J, Dissanayaka Mudiyanselage SD, Hao J, Wang Y. Cellular roadmaps of viroid infection. Trends in Microbiology. PMID 37349206 DOI: 10.1016/j.tim.2023.05.014  0.392
2023 Wang Y, Folimonova SY. Long noncoding RNAs in plant-pathogen interactions. Phytopathology. PMID 36945729 DOI: 10.1094/PHYTO-02-23-0051-IA  0.383
2022 Yang LZ, Gao BQ, Huang Y, Wang Y, Yang L, Chen LL. Multi-color RNA imaging with CRISPR-Cas13b systems in living cells. Cell Insight. 1: 100044. PMID 37192858 DOI: 10.1016/j.cellin.2022.100044  0.346
2022 Teng C, Kong F, Mo J, Lin W, Jin C, Wang K, Wang Y. The roles of RNA N-methyladenosine in esophageal cancer. Heliyon. 8: e11430. PMID 36387447 DOI: 10.1016/j.heliyon.2022.e11430  0.35
2022 Dissanayaka Mudiyanselage SD, Ma J, Pechan T, Pechanova O, Liu B, Wang Y. A remodeled RNA polymerase II complex catalyzing viroid RNA-templated transcription. Plos Pathogens. 18: e1010850. PMID 36121876 DOI: 10.1371/journal.ppat.1010850  0.33
2022 Li X, Yu K, Li F, Lu W, Wang Y, Zhang W, Bai Y. Novel Method of Full-Length RNA-seq That Expands the Identification of Non-Polyadenylated RNAs Using Nanopore Sequencing. Analytical Chemistry. PMID 36018770 DOI: 10.1021/acs.analchem.2c01128  0.314
2022 Ma J, Dissanayaka Mudiyanselage SD, Park WJ, Wang M, Takeda R, Liu B, Wang Y. A nuclear import pathway exploited by pathogenic noncoding RNAs. The Plant Cell. PMID 35877068 DOI: 10.1093/plcell/koac210  0.366
2022 Ma J, Wang Y. Studies on Viroid Shed Light on the Role of RNA Three-Dimensional Structural Motifs in RNA Trafficking in Plants. Frontiers in Plant Science. 13: 836267. PMID 35401640 DOI: 10.3389/fpls.2022.836267  0.398
2022 Ma J, Mudiyanselage SDD, Wang Y. Emerging value of the viroid model in molecular biology and beyond. Virus Research. 313: 198730. PMID 35263622 DOI: 10.1016/j.virusres.2022.198730  0.38
2022 Gao X, Ma XK, Li X, Li GW, Liu CX, Zhang J, Wang Y, Wei J, Chen J, Chen LL, Yang L. Knockout of circRNAs by base editing back-splice sites of circularized exons. Genome Biology. 23: 16. PMID 35012611 DOI: 10.1186/s13059-021-02563-0  0.329
2022 Mudiyanselage SDD, Wang Y. Fluorescein-Based Electrophoretic Mobility Shift Assay. Methods in Molecular Biology (Clifton, N.J.). 2316: 133-140. PMID 34845691 DOI: 10.1007/978-1-0716-1464-8_12  0.345
2022 Smith HN, Ma J, Wang Y. Analysis on RNA Motif-Based RNA Trafficking in Plants. Methods in Molecular Biology (Clifton, N.J.). 2316: 29-37. PMID 34845682 DOI: 10.1007/978-1-0716-1464-8_3  0.395
2021 Jia E, Shi H, Wang Y, Zhou Y, Liu Z, Pan M, Bai Y, Zhao X, Ge Q. Optimization of library preparation based on SMART for ultralow RNA-seq in mice brain tissues. Bmc Genomics. 22: 809. PMID 34758728 DOI: 10.1186/s12864-021-08132-w  0.313
2021 Xu Y, Tian Y, Li F, Wang Y, Yang J, Gong H, Wan X, Ouyang M. Circular RNA HECTD1 Mitigates Ulcerative Colitis by Promoting Enterocyte Autophagy Via miR-182-5p/HuR Axis. Inflammatory Bowel Diseases. PMID 34427642 DOI: 10.1093/ibd/izab188  0.321
2021 Wang Y. Current view and perspectives in viroid replication. Current Opinion in Virology. 47: 32-37. PMID 33460914 DOI: 10.1016/j.coviro.2020.12.004  0.377
2020 Zhang L, Wei Z, Wang Y, Xu F, Cheng Z. Long noncoding RNA ROR1-AS1 enhances STC2-mediated cell growth and autophagy in cervical cancer through miR-670-3p. Journal of Receptor and Signal Transduction Research. 1-11. PMID 33081599 DOI: 10.1080/10799893.2020.1836495  0.315
2020 Wang Y, Li D, Lu J, Chen L, Zhang S, Qi W, Li W, Xu H. Long noncoding RNA TTN-AS1 facilitates tumorigenesis and metastasis by maintaining TTN expression in skin cutaneous melanoma. Cell Death & Disease. 11: 664. PMID 32820147 DOI: 10.1038/s41419-020-02895-y  0.31
2020 Lin L, Zhou G, Chen P, Wang Y, Han J, Chen M, He Y, Zhang S. Which long noncoding RNAs and circular RNAs contribute to inflammatory bowel disease? Cell Death & Disease. 11: 456. PMID 32541691 DOI: 10.1038/s41419-020-2657-z  0.318
2020 Wang Y, Liu B. Circular RNA in Diseased Heart. Cells. 9. PMID 32429565 DOI: 10.3390/cells9051240  0.313
2020 Dissanayaka Mudiyanselage SD, Wang Y. Evidence Supporting That RNA Polymerase II Catalyzes De Novo Transcription Using Potato Spindle Tuber Viroid Circular RNA Templates. Viruses. 12. PMID 32230827 DOI: 10.3390/v12040371  0.303
2020 Zhang ZJ, Gao Q, Fang XD, Ding ZH, Gao DM, Xu WY, Cao Q, Qiao JH, Yang YZ, Han C, Wang Y, Yuan X, Li D, Wang XB. CCR4, a RNA decay factor, is hijacked by a plant cytorhabdovirus phosphoprotein to facilitate virus replication. Elife. 9. PMID 32207684 DOI: 10.7554/eLife.53753  0.332
2019 Wang Y, Liu S, Zhu HJ, Zhong J. Molecular characterization of a novel mycovirus from the plant pathogenic fungus Colletotrichum gloeosporioides. Archives of Virology. PMID 31385115 DOI: 10.1007/s00705-019-04354-2  0.34
2019 Jiang J, Ma J, Liu B, Wang Y. Combining a Simple Method for DNA/RNA/Protein Co-Purification and Arabidopsis Protoplast Assay to Facilitate Viroid Research. Viruses. 11. PMID 30987196 DOI: 10.3390/v11040324  0.305
2018 Dissanayaka Mudiyanselage SD, Qu J, Tian N, Jiang J, Wang Y. Potato Spindle Tuber Viroid RNA-Templated Transcription: Factors and Regulation. Viruses. 10. PMID 30227597 DOI: 10.3390/v10090503  0.348
2018 Jiang J, Smith HN, Ren D, Dissanayaka SM, Dawe AL, Wang L, Wang Y. Potato spindle tuber viroid modulates its replication through a direct interaction with a splicing regulator. Journal of Virology. PMID 30068655 DOI: 10.1128/JVI.01004-18  0.363
2018 Takeda R, Zirbel CL, Leontis NB, Wang Y, Ding B. Allelic RNA Motifs in Regulating Systemic Trafficking of Potato Spindle Tuber Viroid. Viruses. 10. PMID 29601476 DOI: 10.3390/V10040160  0.67
2018 Wang Y, Zirbel CL, Leontis NB, Ding B. RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution. Plos Pathogens. 14: e1006801. PMID 29470541 DOI: 10.1371/Journal.Ppat.1006801  0.624
2018 Yu JX, Zhu JZ, Wang Y, Zhang CJ, Zhong J, Zhu HJ, Da Gao B, Zhou Q. Molecular characterization of a putative gammapartitivirus in the phytopathogenic fungus Nigrospora oryzae. Archives of Virology. PMID 29302791 DOI: 10.1007/s00705-017-3671-z  0.307
2017 Guo Z, Wang XB, Wang Y, Li WX, Gal-On A, Ding SW. Identification of a new host factor required for antiviral RNAi and amplification of viral siRNAs. Plant Physiology. PMID 29184028 DOI: 10.1104/Pp.17.01370  0.351
2017 Zheng Y, Ding B, Fei Z, Wang Y. Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors. Scientific Reports. 7: 9771. PMID 28852064 DOI: 10.1038/S41598-017-10143-1  0.58
2017 Zhang XP, Liu DS, Yan T, Fang XD, Dong K, Xu J, Wang Y, Yu JL, Wang XB. Cucumber mosaic virus coat protein modulates the accumulation of 2b protein and antiviral silencing that causes symptom recovery in planta. Plos Pathogens. 13: e1006522. PMID 28727810 DOI: 10.1371/journal.ppat.1006522  0.342
2017 Zheng Y, Wang Y, Ding B, Fei Z. Comprehensive transcriptome analyses reveal that potato spindle tuber viroid triggers genome-wide changes in alternative splicing, inducible trans-acting activity of phasiRNAs and immune responses. Journal of Virology. PMID 28331096 DOI: 10.1128/Jvi.00247-17  0.584
2016 Xu J, Liu D, Zhang Y, Wang Y, Han C, Li D, Yu JL, Wang XB. Improved Pathogenicity of a Beet Black Scorch Virus Variant by Low Temperature and Co-infection with Its Satellite RNA. Frontiers in Microbiology. 7: 1771. PMID 27867378 DOI: 10.3389/fmicb.2016.01771  0.39
2016 Wang Y, Qu J, Ji S, Wallace AJ, Wu J, Li Y, Gopalan V, Ding B. A Land Plant-specific Transcription Factor Directly Enhances Transcription of a Pathogenic Noncoding RNA Template by DNA-dependent RNA Polymerase II. The Plant Cell. PMID 27113774 DOI: 10.1105/Tpc.16.00100  0.635
2015 Jiang YY, Yuan ZY, Xu YX, Zang W, Cao JP, Wang Y, Yin JH, Shen YJ. [Molecular characteristics and RNA interference efficiency of Schistosoma japonicum Sj79 gene]. Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi = Chinese Journal of Schistosomiasis Control. 27: 273-6, 289. PMID 26510359  0.328
2015 Itaya A, Lucas WJ, Qi Y, Qu F, Wang Y, Zhong X, Liu CM. In memory of Professor Biao Ding (1960-2015). Journal of Integrative Plant Biology. 57: 730-1. PMID 26182880 DOI: 10.1111/Jipb.12381  0.681
2015 Zheng Y, Wang Y, Wu J, Ding B, Fei Z. A dynamic evolutionary and functional landscape of plant phased small interfering RNAs. Bmc Biology. 13: 32. PMID 25980406 DOI: 10.1186/S12915-015-0142-4  0.556
2015 Dong K, Wang Y, Zhang Z, Chai LX, Tong X, Xu J, Li D, Wang XB. Two amino acids near the N-terminus of Cucumber mosaic virus 2b play critical roles in the suppression of RNA silencing and viral infectivity. Molecular Plant Pathology. PMID 25893424 DOI: 10.1111/mpp.12270  0.316
2014 Wu WQ, Fan HY, Jiang N, Wang Y, Zhang ZY, Zhang YL, Wang XB, Li DW, Yu JL, Han CG. Infection of Beet necrotic yellow vein virus with RNA4-encoded P31 specifically up-regulates pathogenesis-related protein 10 in Nicotiana benthamiana. Virology Journal. 11: 118. PMID 24961274 DOI: 10.1186/1743-422X-11-118  0.317
2014 Liu N, Wu S, Van Houten J, Wang Y, Ding B, Fei Z, Clarke TH, Reed JW, van der Knaap E. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. Journal of Experimental Botany. 65: 2507-20. PMID 24723401 DOI: 10.1093/Jxb/Eru141  0.528
2014 Fan H, Sun H, Wang Y, Zhang Y, Wang X, Li D, Yu J, Han C. Deep sequencing-based transcriptome profiling reveals comprehensive insights into the responses of Nicotiana benthamiana to beet necrotic yellow vein virus infections containing or lacking RNA4. Plos One. 9: e85284. PMID 24416380 DOI: 10.1371/journal.pone.0085284  0.32
2013 Zhou H, Sun Y, Wang Y, Liu M, Liu C, Wang W, Liu X, Li L, Deng F, Wang H, Guo Y, Lou Z. The nucleoprotein of severe fever with thrombocytopenia syndrome virus processes a stable hexameric ring to facilitate RNA encapsidation. Protein & Cell. 4: 445-55. PMID 23702688 DOI: 10.1007/s13238-013-3901-4  0.303
2012 Wang Y, Chen X, Liu ZP, Huang Q, Wang Y, Xu D, Zhang XS, Chen R, Chen L. De novo prediction of RNA-protein interactions from sequence information. Molecular Biosystems. 9: 133-42. PMID 23138266 DOI: 10.1039/C2Mb25292A  0.302
2012 Wu Q, Wang Y, Cao M, Pantaleo V, Burgyan J, Li WX, Ding SW. Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm. Proceedings of the National Academy of Sciences of the United States of America. 109: 3938-43. PMID 22345560 DOI: 10.1073/pnas.1117815109  0.352
2011 Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B. Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. The Plant Cell. 23: 3185-203. PMID 21917547 DOI: 10.1105/Tpc.111.088013  0.665
2011 Wang Y, Fan H, Wang XB, Li M, Han C, Li D, Yu J. Detection and characterization of spontaneous internal deletion mutants of Beet Necrotic yellow vein virus RNA3 from systemic host Nicotiana benthamiana. Virology Journal. 8: 335. PMID 21718549 DOI: 10.1186/1743-422X-8-335  0.354
2011 Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. The Plant Cell. 23: 1625-38. PMID 21467580 DOI: 10.1105/Tpc.110.082305  0.366
2011 Wang Y, Shibuya M, Taneda A, Kurauchi T, Senda M, Owens RA, Sano T. Accumulation of Potato spindle tuber viroid-specific small RNAs is accompanied by specific changes in gene expression in two tomato cultivars. Virology. 413: 72-83. PMID 21353278 DOI: 10.1016/j.virol.2011.01.021  0.374
2011 Wang Y, Sun DQ, Liu DG. Tumor suppression by RNA from C/EBPβ 3'UTR through the inhibition of protein kinase Cε activity. Plos One. 6: e16543. PMID 21283634 DOI: 10.1371/journal.pone.0016543  0.304
2010 Wang Y, Ding B. Viroids: Small probes for exploring the vast universe of RNA trafficking in plants Journal of Integrative Plant Biology. 52: 28-39. PMID 20074138 DOI: 10.1111/J.1744-7909.2010.00900.X  0.64
2009 George CX, Li Z, Okonski KM, Toth AM, Wang Y, Samuel CE. Tipping the balance: Antagonism of pkr kinase and adar1 deaminase functions by virus gene products Journal of Interferon and Cytokine Research. 29: 477-487. PMID 19715457 DOI: 10.1089/jir.2009.0065  0.344
2009 Ding B, Wang Y. Viroids: uniquely simple and tractable models to elucidate regulation of cell-to-cell trafficking of RNA. Dna and Cell Biology. 28: 51-6. PMID 19105595 DOI: 10.1089/Dna.2008.0811  0.648
2007 Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R, Harris AR, Molina C, Nelson RS, Ding B. A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. Journal of Virology. 81: 2980-94. PMID 17202210 DOI: 10.1128/Jvi.02339-06  0.722
2007 Wang Y, Zhong X, Itaya A, Ding B. Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo. Journal of Virology. 81: 2074-7. PMID 17135317 DOI: 10.1128/Jvi.01781-06  0.741
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