Bin Yu - Publications

Affiliations: 
The University of Nebraska - Lincoln, Lincoln, NE 

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Li Q, Liu Y, Li B, Zheng C, Yu B, Niu K, Qiao Y. Bioinformatics analysis of oxidative stress genes in the pathogenesis of ulcerative colitis based on a competing endogenous RNA regulatory network. Peerj. 12: e17213. PMID 39161963 DOI: 10.7717/peerj.17213  0.397
2024 Zhou B, Yu H, Xue Y, Li M, Zhang C, Yu B. The spliceosome-associated protein CWC15 promotes miRNA biogenesis in Arabidopsis. Nature Communications. 15: 2399. PMID 38493158 DOI: 10.1038/s41467-024-46676-z  0.637
2023 Li M, Yu H, Zhou B, Gan L, Li S, Zhang C, Yu B. JANUS, a spliceosome-associated protein, promotes miRNA biogenesis in Arabidopsis. Nucleic Acids Research. PMID 37994727 DOI: 10.1093/nar/gkad1105  0.53
2023 Lv N, Zhang Y, Wang L, Suo Y, Zeng W, Yu Q, Yu B, Jiang X. LncRNA/CircRNA-miRNA-mRNA Axis in Atherosclerotic Inflammation: Research Progress. Current Pharmaceutical Biotechnology. PMID 37842894 DOI: 10.2174/0113892010267577231005102901  0.516
2022 Guo J, Fang X, Zhou J, Zeng L, Yu B. Identification and validation of miR-509-5p as a prognosticator for favorable survival in osteosarcoma. Medicine. 101: e29705. PMID 35984199 DOI: 10.1097/MD.0000000000029705  0.326
2022 Yu B, Zhu Z, Hu T, Lu J, Shen B, Wu T, Guo K, Chaudhary SK, Feng H, Zhao W, Wu D. Construction of a circular RNA-based competing endogenous RNA network to screen biomarkers related to intervertebral disc degeneration. Bmc Musculoskeletal Disorders. 23: 675. PMID 35840955 DOI: 10.1186/s12891-022-05579-0  0.511
2022 Pan HT, Shi XL, Fang M, Sun XM, Chen PP, Ding JL, Xia GY, Yu B, Zhang T, Zhu HD. Profiling of exosomal microRNAs expression in umbilical cord blood from normal and preeclampsia patients. Bmc Pregnancy and Childbirth. 22: 124. PMID 35152894 DOI: 10.1186/s12884-022-04449-w  0.309
2021 Qian X, Lin G, Wang J, Zhang S, Ma J, Yu B, Wu R, Liu M. CircRNA_01477 influences axonal growth via regulating miR-3075/FosB/Stat3 axis. Experimental Neurology. 113905. PMID 34699790 DOI: 10.1016/j.expneurol.2021.113905  0.455
2021 Li M, Yu H, Liu K, Yang W, Zhou B, Gan L, Li S, Zhang C, Yu B. Serrate-Associated Protein 1, a splicing-related protein, promotes miRNA biogenesis in Arabidopsis. The New Phytologist. PMID 34449907 DOI: 10.1111/nph.17691  0.55
2021 Meng X, Li A, Yu B, Li S. Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation. Computational and Structural Biotechnology Journal. 19: 2567-2574. PMID 34025943 DOI: 10.1016/j.csbj.2021.04.062  0.56
2021 Yu B, Zhou S, Liang H, Ye Q, Wang Y. Development and Validation of a Novel Circulating miRNA-Based Diagnostic Score for Early Detection of Hepatocellular Carcinoma. Digestive Diseases and Sciences. PMID 33982217 DOI: 10.1007/s10620-021-07031-0  0.341
2021 Zhang F, Li SP, Zhang T, Yu B, Zhang J, Ding HG, Ye FJ, Yuan H, Ma YY, Pan HT, He Y. High throughput microRNAs sequencing profile of serum exosomes in women with and without polycystic ovarian syndrome. Peerj. 9: e10998. PMID 33763302 DOI: 10.7717/peerj.10998  0.379
2021 Zhang F, Li SP, Zhang T, Yu B, Zhang J, Ding HG, Ye FJ, Yuan H, Ma YY, Pan HT, He Y. High throughput microRNAs sequencing profile of serum exosomes in women with and without polycystic ovarian syndrome. Peerj. 9: e10998. PMID 33763302 DOI: 10.7717/peerj.10998  0.379
2021 Li M, Yu B. Recent advances in the regulation of plant miRNA biogenesis. Rna Biology. PMID 33666136 DOI: 10.1080/15476286.2021.1899491  0.57
2021 Gan L, Yu B. Forkhead-associated domain 2 links light signal to miRNA biogenesis. Molecular Plant. PMID 33647479 DOI: 10.1016/j.molp.2021.02.009  0.401
2021 Gan L, Yu B. Forkhead-associated domain 2 links light signal to miRNA biogenesis. Molecular Plant. PMID 33647479 DOI: 10.1016/j.molp.2021.02.009  0.401
2020 Li S, Li M, Liu K, Zhang H, Zhang S, Zhang C, Yu B. MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities. Proceedings of the National Academy of Sciences of the United States of America. PMID 32887800 DOI: 10.1073/pnas.2008283117  0.543
2019 Wu R, Mao S, Wang Y, Zhou S, Liu Y, Liu M, Gu X, Yu B. Differential Circular RNA Expression Profiles Following Spinal Cord Injury in Rats: A Temporal and Experimental Analysis. Frontiers in Neuroscience. 13: 1303. PMID 31920480 DOI: 10.3389/fnins.2019.01303  0.405
2019 Wang H, She G, Zhou W, Liu K, Miao J, Yu B. Expression profile of circular RNAs in placentas of women with gestational diabetes mellitus. Endocrine Journal. PMID 30814439 DOI: 10.1507/endocrj.EJ18-0291  0.355
2018 Pang P, Yu B, Shi Y, Deng L, Xu H, Wu S, Chen X. Alteration of Intestinal Flora Stimulates Pulmonary microRNAs to Interfere with Host Antiviral Immunity in Influenza. Molecules (Basel, Switzerland). 23. PMID 30513647 DOI: 10.3390/molecules23123151  0.407
2018 Li S, Xu R, Li A, Liu K, Gu L, Li M, Zhang H, Zhang Y, Zhuang S, Wang Q, Gao G, Li N, Zhang C, Li Y, Yu B. SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis. Nucleic Acids Research. PMID 29982637 DOI: 10.1093/nar/gky591  0.557
2018 Wang X, Wang Y, Dou Y, Chen L, Wang J, Jiang N, Guo C, Yao Q, Wang C, Liu L, Yu B, Zheng B, Chekanova JA, Ma J, Ren G. Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29941559 DOI: 10.1073/pnas.1721917115  0.831
2018 Zhang S, Dou Y, Li S, Ren G, Chevalier D, Zhang C, Yu B. DAWDLE interacts with DICER-LIKE proteins to mediate small RNA biogenesis. Plant Physiology. PMID 29784765 DOI: 10.1104/pp.18.00354  0.808
2018 Wang Z, Ma Z, Castillo-González C, Sun D, Li Y, Yu B, Zhao B, Li P, Zhang X. SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production. Nature. PMID 29769717 DOI: 10.1038/S41586-018-0135-X  0.539
2018 Li S, Liu K, Zhou B, Li M, Zhang S, Zeng L, Zhang C, Yu B. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. The Plant Cell. PMID 29437988 DOI: 10.1105/tpc.17.00953  0.534
2017 Li S, Yu B. miRNA limits MAP kinase-mediated immunity: optimization of plant fitness. Journal of Experimental Botany. 68: 5685-5687. PMID 29267907 DOI: 10.1093/jxb/erx385  0.348
2017 Dou Y, Li S, Yang W, Liu K, Du Q, Ren G, Yu B, Zhang C. Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana. Current Genomics. 18: 360-365. PMID 29081691 DOI: 10.2174/1389202918666170307161124  0.633
2017 Jia T, Zhang B, You C, Zhang Y, Zeng L, Li S, Johnson KCM, Yu B, Li X, Chen X. The Arabidopsis MOS4-associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing. The Plant Cell. PMID 28947490 DOI: 10.1105/Tpc.17.00370  0.82
2017 Ren G, Wang X, Yu B. Analysis of the Uridylation of Both ARGONAUTE-Bound MiRNAs and 5' Cleavage Products of Their Target RNAs in Plants. Methods in Molecular Biology (Clifton, N.J.). 1640: 23-37. PMID 28608332 DOI: 10.1007/978-1-4939-7165-7_2  0.807
2017 Li S, Liu K, Zhang S, Wang X, Rogers K, Ren G, Zhang C, Yu B. STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28115696 DOI: 10.1073/Pnas.1613069114  0.785
2016 Li S, Castillo-Gonzalez C, Yu B, Zhang X. The functions of plant small RNAs in development and in stress responses. The Plant Journal : For Cell and Molecular Biology. PMID 27943457 DOI: 10.1111/tpj.13444  0.498
2016 Wang H, Zhang C, Dou Y, Yu B, Liu Y, Heng-Moss TM, Lu G, Wachholtz M, Bradshaw JD, Twigg P, Scully E, Palmer N, Sarath G. Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing. Gene. PMID 27838454 DOI: 10.1016/J.Gene.2016.11.014  0.508
2016 Feng B, Ma S, Chen S, Zhu N, Zhang S, Yu B, Yu Y, Le B, Chen X, Dinesh-Kumar SP, Shan L, He P. PARylation of the forkhead-associated domain protein DAWDLE regulates plant immunity. Embo Reports. PMID 27797852 DOI: 10.15252/Embr.201642486  0.443
2016 Liu Y, Li S, Chen Y, Kimberlin AN, Cahoon EB, Yu B. snRNA 3' End Processing by a CPSF73-Containing Complex Essential for Development in Arabidopsis. Plos Biology. 14: e1002571. PMID 27780203 DOI: 10.1371/Journal.Pbio.1002571  0.329
2015 Zhang S, Liu Y, Yu B. New insights into pri-miRNA processing and accumulation in plants. Wiley Interdisciplinary Reviews. Rna. PMID 26119101 DOI: 10.1002/wrna.1292  0.546
2015 Zhang C, Zhang W, Ren G, Li D, Cahoon RE, Chen M, Zhou Y, Yu B, Cahoon EB. Chlorophyll Synthase under Epigenetic Surveillance Is Critical for Vitamin E Synthesis, and Altered Expression Affects Tocopherol Levels in Arabidopsis. Plant Physiology. 168: 1503-11. PMID 26048882 DOI: 10.1104/Pp.15.00594  0.634
2015 Xie M, Yu B. siRNA-directed DNA Methylation in Plants. Current Genomics. 16: 23-31. PMID 25937811 DOI: 10.2174/1389202915666141128002211  0.56
2015 Tu B, Liu L, Xu C, Zhai J, Li S, Lopez MA, Zhao Y, Yu Y, Ramachandran V, Ren G, Yu B, Li S, Meyers BC, Mo B, Chen X. Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. Plos Genetics. 11: e1005119. PMID 25928405 DOI: 10.1371/Journal.Pgen.1005119  0.846
2015 Wang X, Zhang S, Dou Y, Zhang C, Chen X, Yu B, Ren G. Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis. Plos Genetics. 11: e1005091. PMID 25928341 DOI: 10.1371/Journal.Pgen.1005091  0.821
2015 Li Z, Huang C, Bao C, Chen L, Lin M, Wang X, Zhong G, Yu B, Hu W, Dai L, Zhu P, Chang Z, Wu Q, Zhao Y, Jia Y, et al. Exon-intron circular RNAs regulate transcription in the nucleus. Nature Structural & Molecular Biology. 22: 256-64. PMID 25664725 DOI: 10.1038/Nsmb.2959  0.323
2014 Ren G, Chen X, Yu B. Small RNAs meet their targets: when methylation defends miRNAs from uridylation. Rna Biology. 11: 1099-104. PMID 25483033 DOI: 10.4161/Rna.36243  0.75
2014 Zhang S, Liu Y, Yu B. PRL1, an RNA-binding protein, positively regulates the accumulation of miRNAs and siRNAs in Arabidopsis. Plos Genetics. 10: e1004841. PMID 25474114 DOI: 10.1371/journal.pgen.1004841  0.556
2014 Xie M, Zhang S, Yu B. microRNA biogenesis, degradation and activity in plants. Cellular and Molecular Life Sciences : Cmls. 72: 87-99. PMID 25209320 DOI: 10.1007/s00018-014-1728-7  0.762
2014 Ren G, Xie M, Zhang S, Vinovskis C, Chen X, Yu B. Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavage. Proceedings of the National Academy of Sciences of the United States of America. 111: 6365-70. PMID 24733911 DOI: 10.1073/Pnas.1405083111  0.846
2014 Hao N, Lü G, Liu X, Yu B, Wu H, Ji D, Li Y, Han X. Potential role of microRNA: identification and functional analysis of microRNA in corticospinal tract after unilateral lesions of the medullary pyramid. Neuroscience Letters. 564: 37-42. PMID 24513234 DOI: 10.1016/j.neulet.2013.12.050  0.469
2014 Liu X, Lu T, Dou Y, Yu B, Zhang C. Identification of RNA silencing components in soybean and sorghum. Bmc Bioinformatics. 15: 4. PMID 24387046 DOI: 10.1186/1471-2105-15-4  0.488
2013 Zhang S, Xie M, Ren G, Yu B. CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts. Proceedings of the National Academy of Sciences of the United States of America. 110: 17588-93. PMID 24101471 DOI: 10.1073/pnas.1310644110  0.808
2013 Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC. Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. The Plant Cell. 25: 2417-28. PMID 23839787 DOI: 10.1105/Tpc.113.114603  0.847
2012 Ren G, Yu B. Critical roles of RNA-binding proteins in miRNA biogenesis in Arabidopsis Rna Biology. 9: 1424-1428. PMID 23135480 DOI: 10.4161/rna.22740  0.807
2012 Zhou S, Shen D, Wang Y, Gong L, Tang X, Yu B, Gu X, Ding F. microRNA-222 targeting PTEN promotes neurite outgrowth from adult dorsal root ganglion neurons following sciatic nerve transection. Plos One. 7: e44768. PMID 23028614 DOI: 10.1371/journal.pone.0044768  0.378
2012 Ren G, Yu B. Post-transcriptional control of miRNA abundance in Arabidopsis Plant Signaling &Amp; Behavior. 7: 1443-1446. PMID 22960761 DOI: 10.4161/psb.21956  0.803
2012 Yu B, Qian T, Wang Y, Zhou S, Ding G, Ding F, Gu X. miR-182 inhibits Schwann cell proliferation and migration by targeting FGF9 and NTM, respectively at an early stage following sciatic nerve injury. Nucleic Acids Research. 40: 10356-65. PMID 22917588 DOI: 10.1093/nar/gks750  0.303
2012 Ren G, Xie M, Dou Y, Zhang S, Zhang C, Yu B. Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12817-21. PMID 22802657 DOI: 10.1073/pnas.1204915109  0.641
2012 Ren G, Xie M, Dou Y, Zhang S, Zhang C, Yu B. Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12817-21. PMID 22802657 DOI: 10.1073/pnas.1204915109  0.823
2012 Xie M, Ren G, Zhang C, Yu B. The DNA- and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation. The Plant Journal : For Cell and Molecular Biology. 72: 491-500. PMID 22757778 DOI: 10.1111/j.1365-313X.2012.05092.x  0.69
2012 Xu YZ, Santamaria Rde L, Virdi KS, Arrieta-Montiel MP, Razvi F, Li S, Ren G, Yu B, Alexander D, Guo L, Feng X, Dweikat IM, Clemente TE, Mackenzie SA. The chloroplast triggers developmental reprogramming when mutS HOMOLOG1 is suppressed in plants. Plant Physiology. 159: 710-20. PMID 22496509 DOI: 10.1104/Pp.112.196055  0.576
2012 Ren G, Chen X, Yu B. Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis. Current Biology : Cb. 22: 695-700. PMID 22464191 DOI: 10.1016/J.Cub.2012.02.052  0.825
2012 Li S, Yu B, Wang S, Gu Y, Yao D, Wang Y, Qian T, Ding F, Gu X. Identification and functional analysis of novel micro-RNAs in rat dorsal root ganglia after sciatic nerve resection. Journal of Neuroscience Research. 90: 791-801. PMID 22420035 DOI: 10.1002/jnr.22814  0.399
2012 Yu B, Zhou S, Wang Y, Qian T, Ding G, Ding F, Gu X. miR-221 and miR-222 promote Schwann cell proliferation and migration by targeting LASS2 after sciatic nerve injury. Journal of Cell Science. 125: 2675-83. PMID 22393241 DOI: 10.1242/jcs.098996  0.331
2012 Xie M, Ren G, Costa-Nunes P, Pontes O, Yu B. A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Research. 40: 4422-31. PMID 22302148 DOI: 10.1093/Nar/Gks034  0.691
2011 Yu B, Zhou S, Wang Y, Ding G, Ding F, Gu X. Profile of microRNAs following rat sciatic nerve injury by deep sequencing: Implication for mechanisms of nerve regeneration Plos One. 6. PMID 21931774 DOI: 10.1371/journal.pone.0024612  0.428
2011 Yu B, Zhou S, Qian T, Wang Y, Ding F, Gu X. Altered microRNA expression following sciatic nerve resection in dorsal root ganglia of rats. Acta Biochimica Et Biophysica Sinica. 43: 909-15. PMID 21908854 DOI: 10.1093/abbs/gmr083  0.419
2011 Zhao C, Dong J, Jiang T, Shi Z, Yu B, Zhu Y, Chen D, Xu J, Huo R, Dai J, Xia Y, Pan S, Hu Z, Sha J. Early second-trimester serum miRNA profiling predicts gestational diabetes mellitus. Plos One. 6: e23925. PMID 21887347 DOI: 10.1371/journal.pone.0023925  0.349
2011 Zhou S, Yu B, Qian T, Yao D, Wang Y, Ding F, Gu X. Early changes of microRNAs expression in the dorsal root ganglia following rat sciatic nerve transection. Neuroscience Letters. 494: 89-93. PMID 21371527 DOI: 10.1016/j.neulet.2011.02.064  0.444
2010 Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Research. 38: 5844-50. PMID 20448024 DOI: 10.1093/Nar/Gkq348  0.844
2010 Yu B, Wang H. Translational inhibition by microRNAs in plants. Progress in Molecular and Subcellular Biology. 50: 41-57. PMID 19841880 DOI: 10.1007/978-3-642-03103-8_3  0.503
2010 Yu B, Chen X. Analysis of miRNA Modifications. Methods in Molecular Biology (Clifton, N.J.). 592: 137-48. PMID 19802594 DOI: 10.1007/978-1-60327-005-2_10  0.73
2009 Zheng B, Wang Z, Li S, Yu B, Liu JY, Chen X. Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes & Development. 23: 2850-60. PMID 19948763 DOI: 10.1101/Gad.1868009  0.742
2009 Song D, Yang Y, Yu B, Zheng B, Deng Z, Lu BL, Chen X, Jiang T. Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. Bmc Bioinformatics. S36. PMID 19208137 DOI: 10.1186/1471-2105-10-S1-S36  0.661
2008 Yu B, Bi L, Zheng B, Ji L, Chevalier D, Agarwal M, Ramachandran V, Li W, Lagrange T, Walker JC, Chen X. The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proceedings of the National Academy of Sciences of the United States of America. 105: 10073-8. PMID 18632581 DOI: 10.1073/Pnas.0804218105  0.845
2007 Yang Z, Vilkaitis G, Yu B, Klimašauskas S, Chen X. Approaches for Studying MicroRNA and Small Interfering RNA Methylation In Vitro and In Vivo Methods in Enzymology. 427: 139-154. PMID 17720483 DOI: 10.1016/S0076-6879(07)27008-9  0.748
2006 Yu B, Chapman EJ, Yang Z, Carrington JC, Chen X. Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis. Febs Letters. 580: 3117-20. PMID 16678167 DOI: 10.1016/J.Febslet.2006.04.063  0.718
2006 Yang Z, Ebright YW, Yu B, Chen X. HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide. Nucleic Acids Research. 34: 667-75. PMID 16449203 DOI: 10.1093/Nar/Gkj474  0.7
2006 Li J, Yang Z, Yu B, Liu J, Chen X. Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Current Biology : Cb. 15: 1501-7. PMID 16111943 DOI: 10.1016/J.Cub.2005.07.029  0.758
2005 Yu B, Yang Z, Li J, Minakhina S, Yang M, Padgett RW, Steward R, Chen X. Methylation as a crucial step in plant microRNA biogenesis. Science (New York, N.Y.). 307: 932-5. PMID 15705854 DOI: 10.1126/Science.1107130  0.736
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