| Year |
Citation |
Score |
| 2024 |
Luo X, Jiang X, Schmitt V, Kulkarni SR, Tran HC, Kacprzak SM, Van Breusegem F, Van Aken O, Vandepoele K, De Clercq I. ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced retrograde signaling. Journal of Experimental Botany. PMID 38812358 DOI: 10.1093/jxb/erae235 |
0.806 |
|
| 2024 |
Audoor S, Bilcke G, Pargana K, Belišová D, Thierens S, Van Bel M, Sterck L, Rijsdijk N, Annunziata R, Ferrante MI, Vandepoele K, Vyverman W. Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction. Molecular Ecology. 33: e17320. PMID 38506152 DOI: 10.1111/mec.17320 |
0.333 |
|
| 2023 |
Manosalva Pérez N, Ferrari C, Engelhorn J, Depuydt T, Nelissen H, Hartwig T, Vandepoele K. MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal : For Cell and Molecular Biology. PMID 37788349 DOI: 10.1111/tpj.16483 |
0.392 |
|
| 2023 |
Manosalva Pérez N, Vandepoele K. Prediction of Transcription Factor Regulators and Gene Regulatory Networks in Tomato Using Binding Site Information. Methods in Molecular Biology (Clifton, N.J.). 2698: 323-349. PMID 37682483 DOI: 10.1007/978-1-0716-3354-0_19 |
0.449 |
|
| 2023 |
Vandepoele K, Kaufmann K. Characterization of Gene Regulatory Networks in Plants Using New Methods and Data Types. Methods in Molecular Biology (Clifton, N.J.). 2698: 1-11. PMID 37682465 DOI: 10.1007/978-1-0716-3354-0_1 |
0.399 |
|
| 2023 |
Smet D, Opdebeeck H, Vandepoele K. Predicting transcriptional responses to heat and drought stress from genomic features using a machine learning approach in rice. Frontiers in Plant Science. 14: 1212073. PMID 37528982 DOI: 10.3389/fpls.2023.1212073 |
0.348 |
|
| 2023 |
Nisa M, Eekhout T, Bergis C, Pedroza-Garcia JA, He X, Mazubert C, Vercauteren I, Cools T, Brik-Chaouche R, Drouin-Wahbi J, Chmaiss L, Latrasse D, Bergounioux C, Vandepoele K, Benhamed M, et al. Distinctive and complementary roles of E2F transcription factors during plant replication stress responses. Molecular Plant. PMID 37415334 DOI: 10.1016/j.molp.2023.07.002 |
0.314 |
|
| 2023 |
Liu L, Heidecker M, Depuydt T, Manosalva Perez N, Crespi M, Blein T, Vandepoele K. Transcription factors KAN1, MYB44, and PIF4 regulate lincRNAs expressed in Arabidopsis roots. Plant Physiology. PMID 37345955 DOI: 10.1093/plphys/kiad360 |
0.436 |
|
| 2023 |
Nguyen TH, Thiers L, Van Moerkercke A, Bai Y, Fernández-Calvo P, Minne M, Depuydt T, Colinas M, Verstaen K, Van Isterdael G, Nützmann HW, Osbourn A, Saeys Y, De Rybel B, Vandepoele K, et al. A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis. Nature Plants. PMID 37188853 DOI: 10.1038/s41477-023-01419-8 |
0.358 |
|
| 2023 |
Gryffroy L, Ceulemans E, Manosalva Pérez N, Venegas-Molina J, Jaramillo-Madrid AC, Rodrigues SD, De Milde L, Jonckheere V, Van Montagu M, De Coninck B, Vandepoele K, Van Damme P, Goossens A. Rhizogenic protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development. Proceedings of the National Academy of Sciences of the United States of America. 120: e2210300120. PMID 36634142 DOI: 10.1073/pnas.2210300120 |
0.329 |
|
| 2022 |
Ferrari C, Manosalva Pérez N, Vandepoele K. MINI-EX: Integrative inference of single-cell gene regulatory networks in plants. Molecular Plant. 15: 1807-1824. PMID 36307979 DOI: 10.1016/j.molp.2022.10.016 |
0.339 |
|
| 2022 |
Depuydt T, De Rybel B, Vandepoele K. Charting plant gene functions in the multi-omics and single-cell era. Trends in Plant Science. PMID 36307271 DOI: 10.1016/j.tplants.2022.09.008 |
0.422 |
|
| 2022 |
Curci PL, Zhang J, Mähler N, Seyfferth C, Mannapperuma C, Diels T, Van Hautegem T, Jonsen D, Street N, Hvidsten TR, Hertzberg M, Nilsson O, Inze D, Nelissen H, Vandepoele K. Identification of growth regulators using cross-species network analysis in plants. Plant Physiology. PMID 35984294 DOI: 10.1093/plphys/kiac374 |
0.697 |
|
| 2022 |
Nagy I, Veeckman E, Liu C, Bel MV, Vandepoele K, Jensen CS, Ruttink T, Asp T. Chromosome-scale assembly and annotation of the perennial ryegrass genome. Bmc Genomics. 23: 505. PMID 35831814 DOI: 10.1186/s12864-022-08697-0 |
0.753 |
|
| 2021 |
Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Berhanu Lemma R, Turchi L, Blanc-Mathieu R, Lucas J, Boddie P, Khan A, Manosalva Pérez N, Fornes O, Leung TY, Aguirre A, Hammal F, Schmelter D, ... ... Vandepoele K, et al. JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic Acids Research. PMID 34850907 DOI: 10.1093/nar/gkab1113 |
0.319 |
|
| 2021 |
Van Bel M, Silvestri F, Weitz EM, Kreft L, Botzki A, Coppens F, Vandepoele K. PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. Nucleic Acids Research. PMID 34747486 DOI: 10.1093/nar/gkab1024 |
0.453 |
|
| 2021 |
Benites LF, Bucchini F, Sanchez-Brosseau S, Grimsley N, Vandepoele K, Piganeau G. Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. Genome Biology and Evolution. 13. PMID 34599324 DOI: 10.1093/gbe/evab216 |
0.332 |
|
| 2021 |
Depuydt T, Vandepoele K. Multi-omics network-based functional annotation of unknown Arabidopsis genes. The Plant Journal : For Cell and Molecular Biology. 108: 1193-1212. PMID 34562334 DOI: 10.1111/tpj.15507 |
0.423 |
|
| 2021 |
Bucchini F, Del Cortona A, Kreft Ł, Botzki A, Van Bel M, Vandepoele K. TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. Nucleic Acids Research. 49: e101. PMID 34197621 DOI: 10.1093/nar/gkab565 |
0.385 |
|
| 2021 |
Colinas M, Pollier J, Vaneechoutte D, Malat DG, Schweizer F, De Milde L, De Clercq R, Guedes JG, Martínez-Cortés T, Molina-Hidalgo FJ, Sottomayor M, Vandepoele K, Goossens A. Subfunctionalization of Paralog Transcription Factors Contributes to Regulation of Alkaloid Pathway Branch Choice in . Frontiers in Plant Science. 12: 687406. PMID 34113373 DOI: 10.3389/fpls.2021.687406 |
0.829 |
|
| 2021 |
Bulankova P, Sekulić M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna-Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, Bowler C, Vyverman W, Vandepoele K, et al. Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms. Current Biology : Cb. PMID 34102110 DOI: 10.1016/j.cub.2021.05.013 |
0.807 |
|
| 2021 |
Bilcke G, Osuna-Cruz CM, Santana Silva M, Poulsen N, D'hondt S, Bulankova P, Vyverman W, De Veylder L, Vandepoele K. Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle. The Plant Journal : For Cell and Molecular Biology. 107: 315-336. PMID 33901335 DOI: 10.1111/tpj.15291 |
0.372 |
|
| 2021 |
De Clercq I, Van de Velde J, Luo X, Liu L, Storme V, Van Bel M, Pottie R, Vaneechoutte D, Van Breusegem F, Vandepoele K. Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators. Nature Plants. 7: 500-513. PMID 33846597 DOI: 10.1038/s41477-021-00894-1 |
0.832 |
|
| 2021 |
Labarre A, López-Escardó D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R, Massana R. Comparative genomics reveals new functional insights in uncultured MAST species. The Isme Journal. PMID 33452482 DOI: 10.1038/s41396-020-00885-8 |
0.455 |
|
| 2021 |
Blanco-Pastor JL, Barre P, Keep T, Ledauphin T, Escobar-Gutiérrez A, Roschanski AM, Willner E, Dehmer KJ, Hegarty M, Muylle H, Veeckman E, Vandepoele K, Ruttink T, Roldán-Ruiz I, Manel S, et al. Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass. Molecular Ecology Resources. 21: 849-870. PMID 33098268 DOI: 10.1111/1755-0998.13289 |
0.82 |
|
| 2020 |
Bousquet L, Hemon C, Malburet P, Bucchini F, Vandepoele K, Grimsley N, Moreau H, Echeverria M. The medium-size noncoding RNA transcriptome of , the smallest living eukaryote, reveals a large family of small nucleolar RNAs displaying multiple genomic expression strategies. Nar Genomics and Bioinformatics. 2: lqaa080. PMID 33575626 DOI: 10.1093/nargab/lqaa080 |
0.305 |
|
| 2020 |
Van Bel M, Vandepoele K. Comment on 'Hayai-Annotation plants: an ultra-fast and comprehensive functional gene annotation system in plants'. The importance of taking the GO graph structure into account. Bioinformatics (Oxford, England). PMID 33346790 DOI: 10.1093/bioinformatics/btaa1052 |
0.335 |
|
| 2020 |
Shin J, Marx H, Richards A, Vaneechoutte D, Jayaraman D, Maeda J, Chakraborty S, Sussman M, Vandepoele K, Ané JM, Coon J, Roy S. A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies. Nucleic Acids Research. PMID 33219668 DOI: 10.1093/nar/gkaa1041 |
0.815 |
|
| 2020 |
Osuna-Cruz CM, Bilcke G, Vancaester E, De Decker S, Bones AM, Winge P, Poulsen N, Bulankova P, Verhelst B, Audoor S, Belisova D, Pargana A, Russo M, Stock F, Cirri E, ... ... Vandepoele K, et al. Author Correction: The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature Communications. 11: 5331. PMID 33067470 DOI: 10.1038/s41467-020-19222-w |
0.792 |
|
| 2020 |
Massana R, Labarre A, López-Escardó D, Obiol A, Bucchini F, Hackl T, Fischer MG, Vandepoele K, Tikhonenkov DV, Husnik F, Keeling PJ. Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. The Isme Journal. PMID 32920602 DOI: 10.1038/S41396-020-00770-4 |
0.343 |
|
| 2020 |
Vancaester E, Depuydt T, Osuna-Cruz CM, Vandepoele K. Comprehensive and Functional Analysis of Horizontal Gene Transfer Events in Diatoms. Molecular Biology and Evolution. 37: 3243-3257. PMID 32918458 DOI: 10.1093/molbev/msaa182 |
0.823 |
|
| 2020 |
Osuna-Cruz CM, Bilcke G, Vancaester E, De Decker S, Bones AM, Winge P, Poulsen N, Bulankova P, Verhelst B, Audoor S, Belisova D, Pargana A, Russo M, Stock F, Cirri E, ... ... Vandepoele K, et al. The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature Communications. 11: 3320. PMID 32620776 DOI: 10.1038/S41467-020-17191-8 |
0.838 |
|
| 2020 |
Stock F, Bilcke G, De Decker S, Osuna-Cruz CM, Van den Berge K, Vancaester E, De Veylder L, Vandepoele K, Mangelinckx S, Vyverman W. Distinctive Growth and Transcriptional Changes of the Diatom in Response to Quorum Sensing Related Compounds. Frontiers in Microbiology. 11: 1240. PMID 32582129 DOI: 10.3389/fmicb.2020.01240 |
0.756 |
|
| 2020 |
Yau S, Krasovec M, Benites LF, Rombauts S, Groussin M, Vancaester E, Aury JM, Derelle E, Desdevises Y, Escande ML, Grimsley N, Guy J, Moreau H, Sanchez-Brosseau S, van de Peer Y, ... Vandepoele K, et al. Virus-host coexistence in phytoplankton through the genomic lens. Science Advances. 6: eaay2587. PMID 32270031 DOI: 10.1126/Sciadv.Aay2587 |
0.789 |
|
| 2020 |
Jones DM, Vandepoele K. Identification and evolution of gene regulatory networks: insights from comparative studies in plants. Current Opinion in Plant Biology. 54: 42-48. PMID 32062128 DOI: 10.1016/j.pbi.2019.12.008 |
0.467 |
|
| 2020 |
Kulkarni SR, Vandepoele K. Inference of plant gene regulatory networks using data-driven methods: A practical overview. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1863: 194447. PMID 31678628 DOI: 10.1016/j.bbagrm.2019.194447 |
0.844 |
|
| 2020 |
Blommaert L, Vancaester E, Huysman MJJ, Osuna-Cruz CM, D’hondt S, Lavaud J, Lepetit B, Winge P, Bones AM, Vandepoele K, Vyverman W, Sabbe K. Light Regulation of LHCX Genes in the Benthic Diatom Seminavis robusta Frontiers in Marine Science. 7. DOI: 10.3389/fmars.2020.00192 |
0.794 |
|
| 2019 |
Vercruysse J, Van Bel M, Osuna-Cruz CM, Kulkarni SR, Storme V, Nelissen H, Gonzalez N, Inzé D, Vandepoele K. Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth. Plant Biotechnology Journal. PMID 31361386 DOI: 10.1111/pbi.13223 |
0.85 |
|
| 2019 |
Kulkarni SR, Jones DM, Vandepoele K. Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data. Plant Physiology. PMID 31345953 DOI: 10.1104/pp.19.00605 |
0.81 |
|
| 2019 |
Lama S, Broda M, Abbas Z, Vaneechoutte D, Belt K, Säll T, Vandepoele K, Van Aken O. Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants. Molecular Biology and Evolution. PMID 30938771 DOI: 10.1093/molbev/msz031 |
0.813 |
|
| 2019 |
Van Bel M, Bucchini F, Vandepoele K. Gene space completeness in complex plant genomes. Current Opinion in Plant Biology. 48: 9-17. PMID 30797187 DOI: 10.1016/j.pbi.2019.01.001 |
0.436 |
|
| 2019 |
Vaneechoutte D, Vandepoele K. Curse: building expression atlases and co-expression networks from public RNA-Seq data. Bioinformatics (Oxford, England). 35: 2880-2881. PMID 30590391 DOI: 10.1093/bioinformatics/bty1052 |
0.785 |
|
| 2019 |
Pollier J, Vancaester E, Kuzhiumparambil U, Vickers CE, Vandepoele K, Goossens A, Fabris M. A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis. Nature Microbiology. 4: 226-233. PMID 30478288 DOI: 10.1038/s41564-018-0305-5 |
0.814 |
|
| 2019 |
Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T. Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 26: 1-12. PMID 30325414 DOI: 10.1093/dnares/dsy033 |
0.823 |
|
| 2018 |
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, ... ... Vandepoele K, et al. Insights into the Evolution of Multicellularity from the Sea Lettuce Genome. Current Biology : Cb. PMID 30220504 DOI: 10.1016/J.Cub.2018.08.015 |
0.848 |
|
| 2018 |
Krasovec M, Vancaester E, Rombauts S, Bucchini F, Yau S, Hemon C, Lebredonchel H, Grimsley N, Moreau H, Sanchez-Brosseau S, Vandepoele K, Piganeau G. Genome analyses of the microalga Picochlorum provide insights into the evolution of thermotolerance in the green lineage. Genome Biology and Evolution. PMID 30113623 DOI: 10.1093/gbe/evy167 |
0.846 |
|
| 2018 |
Gao Z, Daneva A, Salanenka Y, Van Durme M, Huysmans M, Lin Z, De Winter F, Vanneste S, Karimi M, Van de Velde J, Vandepoele K, Van de Walle D, Dewettinck K, Lambrecht BN, Nowack MK. KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis. Nature Plants. PMID 29808023 DOI: 10.1038/s41477-018-0160-7 |
0.779 |
|
| 2018 |
Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT. Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number. Plant, Cell & Environment. PMID 29749073 DOI: 10.1111/Pce.13333 |
0.794 |
|
| 2018 |
Besbrugge N, Van Leene J, Eeckhout D, Cannoot B, Kulkarni SR, De Winne N, Persiau G, Van De Slijke E, Bontinck M, Aesaert S, Impens F, Gevaert K, van Damme D, Van Lijsebettens M, Inze D, ... Vandepoele K, et al. GSyellow, a Swiss-Knife Tag for Functional Protein Analysis in Monocot and Dicot Plants. Plant Physiology. PMID 29678859 DOI: 10.1104/pp.18.00175 |
0.817 |
|
| 2018 |
Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Bossche RV, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, ... Vandepoele K, et al. Author Correction: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nature Communications. 9: 16213. PMID 29633763 DOI: 10.1038/ncomms16213 |
0.784 |
|
| 2018 |
Kulkarni SR, Vaneechoutte D, Van de Velde J, Vandepoele K. TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information. Nucleic Acids Research. 46: e31. PMID 29272447 DOI: 10.1093/nar/gkx1279 |
0.832 |
|
| 2018 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, Lee Rvd, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR: an open-access database of transcription factor binding profiles F1000research. 7. DOI: 10.7490/F1000Research.1115440.1 |
0.774 |
|
| 2017 |
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, ... ... Vandepoele K, et al. The P. patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal : For Cell and Molecular Biology. PMID 29237241 DOI: 10.1111/Tpj.13801 |
0.438 |
|
| 2017 |
Hansen BO, Meyer EH, Ferrari C, Vaid N, Movahedi S, Vandepoele K, Nikoloski Z, Mutwil M. Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. The New Phytologist. PMID 29205376 DOI: 10.1111/Nph.14921 |
0.817 |
|
| 2017 |
Del Cortona A, Leliaert F, Bogaert KA, Turmel M, Boedeker C, Janouškovec J, Lopez-Bautista JM, Verbruggen H, Vandepoele K, De Clerck O. The Plastid Genome in Cladophorales Green Algae Is Encoded by Hairpin Chromosomes. Current Biology : Cb. 27: 3771-3782.e6. PMID 29199074 DOI: 10.1016/J.Cub.2017.11.004 |
0.374 |
|
| 2017 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research. PMID 29161433 DOI: 10.1093/nar/gkx1188 |
0.775 |
|
| 2017 |
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Chèneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research. PMID 29140473 DOI: 10.1093/Nar/Gkx1126 |
0.81 |
|
| 2017 |
Van Bel M, Diels T, Vancaester E, Kreft L, Botzki A, Van de Peer Y, Coppens F, Vandepoele K. PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. Nucleic Acids Research. PMID 29069403 DOI: 10.1093/nar/gkx1002 |
0.829 |
|
| 2017 |
Vaneechoutte D, Estrada AR, Lin YC, Loraine AE, Vandepoele K. Genome-wide characterization of differential transcript usage in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 29031026 DOI: 10.1111/Tpj.13746 |
0.844 |
|
| 2017 |
Forslund K, Pereira C, Capella-Gutierrez S, Sousa da Silva A, Altenhoff A, Huerta-Cepas J, Muffato M, Patricio M, Vandepoele K, Ebersberger I, Blake J, Fernández Breis JT, Boeckmann B, Gabaldón T, et al. Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinformatics (Oxford, England). PMID 28968857 DOI: 10.1093/Bioinformatics/Btx542 |
0.316 |
|
| 2017 |
De Schutter K, Tsaneva M, Kulkarni SR, Rougé P, Vandepoele K, Van Damme EJM. Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa). Rice (New York, N.Y.). 10: 26. PMID 28560587 DOI: 10.1186/s12284-017-0164-3 |
0.781 |
|
| 2017 |
Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Vanden Bossche R, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, ... Vandepoele K, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nature Communications. 8: 15235. PMID 28492275 DOI: 10.1038/ncomms15235 |
0.82 |
|
| 2017 |
Zhang X, Ivanova A, Vandepoele K, Radomiljac JD, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, et al. The transcription factor MYB29 is a regulator of ALTERNATIVE OXIDASE 1. Plant Physiology. PMID 28167700 DOI: 10.1104/pp.16.01494 |
0.808 |
|
| 2017 |
Ruprecht C, Proost S, Hernandez-Coronado M, Ortiz-Ramirez C, Lang D, Rensing SA, Becker JD, Vandepoele K, Mutwil M. Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal : For Cell and Molecular Biology. PMID 28161902 DOI: 10.1111/tpj.13502 |
0.859 |
|
| 2017 |
Vandepoele K. A Guide to the PLAZA 3.0 Plant Comparative Genomic Database. Methods in Molecular Biology (Clifton, N.J.). 1533: 183-200. PMID 27987171 DOI: 10.1007/978-1-4939-6658-5_10 |
0.455 |
|
| 2016 |
Van Leene J, Blomme J, Kulkarni SR, Cannoot B, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Vercruysse L, Vanden Bossche R, Heyndrickx KS, Vanneste S, Goossens A, Gevaert K, Vandepoele K, et al. Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development. Journal of Experimental Botany. PMID 27660483 DOI: 10.1093/jxb/erw347 |
0.832 |
|
| 2016 |
Veeckman E, Ruttink T, Vandepoele K. Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences. The Plant Cell. 28: 1759-68. PMID 27512012 DOI: 10.1105/tpc.16.00349 |
0.846 |
|
| 2016 |
Van de Velde J, Van Bel M, Vaneechoutte D, Vandepoele K. A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. Plant Physiology. 171: 2586-98. PMID 27261064 DOI: 10.1104/pp.16.00821 |
0.86 |
|
| 2015 |
Tzfadia O, Diels T, De Meyer S, Vandepoele K, Aharoni A, Van de Peer Y. CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. Frontiers in Plant Science. 6: 1194. PMID 26779228 DOI: 10.3389/Fpls.2015.01194 |
0.685 |
|
| 2015 |
Wang F, Muto A, Van de Velde J, Neyt P, Himanen K, Vandepoele K, Van Lijsebettens M. Functional Analysis of Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development. Plant Physiology. PMID 26417009 DOI: 10.1104/pp.15.01310 |
0.83 |
|
| 2015 |
Glover NM, Daron J, Pingault L, Vandepoele K, Paux E, Feuillet C, Choulet F. Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B. Genome Biology. 16: 188. PMID 26353816 DOI: 10.1186/s13059-015-0754-6 |
0.383 |
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| 2015 |
De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J. BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements. Bioinformatics (Oxford, England). 31: 3758-66. PMID 26254488 DOI: 10.1093/bioinformatics/btv466 |
0.803 |
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| 2015 |
Gonzalez N, Pauwels L, Baekelandt A, De Milde L, Van Leene J, Besbrugge N, Heyndrickx KS, Pérez AC, Durand AN, De Clercq R, Van De Slijke E, Vanden Bossche R, Eeckhout D, Gevaert K, Vandepoele K, et al. A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis. The Plant Cell. 27: 2273-87. PMID 26232487 DOI: 10.1105/tpc.15.00006 |
0.806 |
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| 2015 |
Verkest A, Byzova M, Martens C, Willems P, Verwulgen T, Slabbinck B, Rombaut D, Van de Velde J, Vandepoele K, Standaert E, Peeters M, Van Lijsebettens M, Van Breusegem F, De Block M. Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. Plant Physiology. PMID 26082400 DOI: 10.1104/Pp.15.00155 |
0.783 |
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| 2015 |
Nelissen H, Eeckhout D, Demuynck K, Persiau G, Walton A, van Bel M, Vervoort M, Candaele J, De Block J, Aesaert S, Van Lijsebettens M, Goormachtig S, Vandepoele K, Van Leene J, Muszynski M, et al. Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf. The Plant Cell. PMID 26036253 DOI: 10.1105/Tpc.15.00269 |
0.66 |
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| 2015 |
Vriet C, Lemmens K, Vandepoele K, Reuzeau C, Russinova E. Evolutionary trails of plant steroid genes. Trends in Plant Science. 20: 301-308. PMID 25861757 DOI: 10.1016/j.tplants.2015.03.006 |
0.405 |
|
| 2015 |
Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Research. 43: D974-81. PMID 25324309 DOI: 10.1093/Nar/Gku986 |
0.839 |
|
| 2014 |
Vargas L, Santa Brígida AB, Mota Filho JP, de Carvalho TG, Rojas CA, Vaneechoutte D, Van Bel M, Farrinelli L, Ferreira PC, Vandepoele K, Hemerly AS. Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways. Plos One. 9: e114744. PMID 25489849 DOI: 10.1371/journal.pone.0114744 |
0.799 |
|
| 2014 |
Heyndrickx KS, Van de Velde J, Wang C, Weigel D, Vandepoele K. A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. The Plant Cell. 26: 3894-910. PMID 25361952 DOI: 10.1105/Tpc.114.130591 |
0.845 |
|
| 2014 |
Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, ... ... Vandepoele K, et al. Structural and functional partitioning of bread wheat chromosome 3B. Science (New York, N.Y.). 345: 1249721. PMID 25035497 DOI: 10.1126/Science.1249721 |
0.347 |
|
| 2014 |
Van de Velde J, Heyndrickx KS, Vandepoele K. Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis. The Plant Cell. 26: 2729-45. PMID 24989046 DOI: 10.1105/tpc.114.127001 |
0.845 |
|
| 2014 |
Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Research. 42: 7681-93. PMID 24914054 DOI: 10.1093/Nar/Gku502 |
0.834 |
|
| 2014 |
Verkest A, Abeel T, Heyndrickx KS, Van Leene J, Lanz C, Van De Slijke E, De Winne N, Eeckhout D, Persiau G, Van Breusegem F, Inzé D, Vandepoele K, De Jaeger G. A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification. Plant Physiology. 164: 1122-33. PMID 24453163 DOI: 10.1104/pp.113.229617 |
0.824 |
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| 2014 |
Vercruyssen L, Verkest A, Gonzalez N, Heyndrickx KS, Eeckhout D, Han SK, Jégu T, Archacki R, Van Leene J, Andriankaja M, De Bodt S, Abeel T, Coppens F, Dhondt S, De Milde L, ... ... Vandepoele K, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. The Plant Cell. 26: 210-29. PMID 24443518 DOI: 10.1105/Tpc.113.115907 |
0.792 |
|
| 2014 |
Fu Q, Fierro AC, Meysman P, Sanchez-Rodriguez A, Vandepoele K, Marchal K, Engelen K. MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinformatics (Oxford, England). 30: 1316-8. PMID 24407224 DOI: 10.1093/bioinformatics/btt739 |
0.335 |
|
| 2013 |
Van Bel M, Proost S, Van Neste C, Deforce D, Van de Peer Y, Vandepoele K. TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. Genome Biology. 14: R134. PMID 24330842 DOI: 10.1186/Gb-2013-14-12-R134 |
0.812 |
|
| 2013 |
Heyman J, Cools T, Vandenbussche F, Heyndrickx KS, Van Leene J, Vercauteren I, Vanderauwera S, Vandepoele K, De Jaeger G, Van Der Straeten D, De Veylder L. ERF115 controls root quiescent center cell division and stem cell replenishment. Science (New York, N.Y.). 342: 860-3. PMID 24158907 DOI: 10.1126/science.1240667 |
0.746 |
|
| 2013 |
De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, et al. The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. The Plant Cell. 25: 3472-90. PMID 24045019 DOI: 10.1105/tpc.113.117168 |
0.648 |
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| 2013 |
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G. pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15: 2147-53. PMID 23826978 DOI: 10.1111/1462-2920.12174 |
0.711 |
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| 2013 |
De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y. Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. Proceedings of the National Academy of Sciences of the United States of America. 110: 2898-903. PMID 23382190 DOI: 10.1073/pnas.1300127110 |
0.725 |
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| 2013 |
Verelst W, Bertolini E, De Bodt S, Vandepoele K, Demeulenaere M, Pè ME, Inzé D. Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves. Molecular Plant. 6: 311-22. PMID 23015761 DOI: 10.1093/mp/sss098 |
0.689 |
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| 2012 |
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, ... Vandepoele K, et al. Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage. Genome Biology. 13: R74. PMID 22925495 DOI: 10.1186/Gb-2012-13-8-R74 |
0.72 |
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| 2012 |
Wang F, Vandepoele K, Van Lijsebettens M. Tetraspanin genes in plants. Plant Science : An International Journal of Experimental Plant Biology. 190: 9-15. PMID 22608515 DOI: 10.1016/j.plantsci.2012.03.005 |
0.416 |
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| 2012 |
Heyndrickx KS, Vandepoele K. Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiology. 159: 884-901. PMID 22589469 DOI: 10.1104/pp.112.196725 |
0.836 |
|
| 2012 |
Movahedi S, Van Bel M, Heyndrickx KS, Vandepoele K. Comparative co-expression analysis in plant biology. Plant, Cell & Environment. 35: 1787-98. PMID 22489681 DOI: 10.1111/j.1365-3040.2012.02517.x |
0.84 |
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| 2012 |
Petrov V, Vermeirssen V, De Clercq I, Van Breusegem F, Minkov I, Vandepoele K, Gechev TS. Identification of cis-regulatory elements specific for different types of reactive oxygen species in Arabidopsis thaliana. Gene. 499: 52-60. PMID 22402413 DOI: 10.1016/j.gene.2012.02.035 |
0.327 |
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| 2012 |
Quimbaya M, Vandepoele K, Raspé E, Matthijs M, Dhondt S, Beemster GT, Berx G, De Veylder L. Identification of putative cancer genes through data integration and comparative genomics between plants and humans. Cellular and Molecular Life Sciences : Cmls. 69: 2041-55. PMID 22218400 DOI: 10.1007/s00018-011-0909-x |
0.483 |
|
| 2012 |
Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K. Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiology. 158: 590-600. PMID 22198273 DOI: 10.1104/pp.111.189514 |
0.842 |
|
| 2012 |
Proost S, Fostier J, De Witte D, Dhoedt B, Demeester P, Van de Peer Y, Vandepoele K. i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets. Nucleic Acids Research. 40: e11. PMID 22102584 DOI: 10.1093/nar/gkr955 |
0.837 |
|
| 2011 |
Movahedi S, Van de Peer Y, Vandepoele K. Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice. Plant Physiology. 156: 1316-30. PMID 21571672 DOI: 10.1104/pp.111.177865 |
0.841 |
|
| 2011 |
Babiychuk E, Vandepoele K, Wissing J, Garcia-Diaz M, De Rycke R, Akbari H, Joubès J, Beeckman T, Jänsch L, Frentzen M, Van Montagu MC, Kushnir S. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Proceedings of the National Academy of Sciences of the United States of America. 108: 6674-9. PMID 21464319 DOI: 10.1073/Pnas.1103442108 |
0.4 |
|
| 2011 |
Fostier J, Proost S, Dhoedt B, Saeys Y, Demeester P, Van de Peer Y, Vandepoele K. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. Bioinformatics (Oxford, England). 27: 749-56. PMID 21216775 DOI: 10.1093/bioinformatics/btr008 |
0.822 |
|
| 2010 |
Huysman MJ, Martens C, Vandepoele K, Gillard J, Rayko E, Heijde M, Bowler C, Inzé D, Van de Peer Y, De Veylder L, Vyverman W. Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling. Genome Biology. 11: R17. PMID 20146805 DOI: 10.1186/Gb-2010-11-2-R17 |
0.812 |
|
| 2009 |
Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K. PLAZA: a comparative genomics resource to study gene and genome evolution in plants. The Plant Cell. 21: 3718-31. PMID 20040540 DOI: 10.1105/tpc.109.071506 |
0.86 |
|
| 2009 |
Van de Peer Y, Fawcett JA, Proost S, Sterck L, Vandepoele K. The flowering world: a tale of duplications. Trends in Plant Science. 14: 680-8. PMID 19818673 DOI: 10.1016/j.tplants.2009.09.001 |
0.838 |
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| 2009 |
Piganeau G, Vandepoele K, Gourbière S, Van de Peer Y, Moreau H. Unravelling cis-regulatory elements in the genome of the smallest photosynthetic eukaryote: phylogenetic footprinting in Ostreococcus. Journal of Molecular Evolution. 69: 249-59. PMID 19693423 DOI: 10.1007/S00239-009-9271-0 |
0.692 |
|
| 2009 |
De Bodt S, Proost S, Vandepoele K, Rouzé P, Van de Peer Y. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. Bmc Genomics. 10: 288. PMID 19563678 DOI: 10.1186/1471-2164-10-288 |
0.788 |
|
| 2009 |
Vandepoele K, Quimbaya M, Casneuf T, De Veylder L, Van de Peer Y. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiology. 150: 535-46. PMID 19357200 DOI: 10.1104/pp.109.136028 |
0.682 |
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| 2009 |
Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal : For Cell and Molecular Biology. 57: 184-94. PMID 18764924 DOI: 10.1111/J.1365-313X.2008.03662.X |
0.727 |
|
| 2008 |
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456: 239-44. PMID 18923393 DOI: 10.1038/Nature07410 |
0.78 |
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| 2008 |
Alvim Kamei CL, Boruc J, Vandepoele K, Van den Daele H, Maes S, Russinova E, Inzé D, De Veylder L. The PRA1 gene family in Arabidopsis. Plant Physiology. 147: 1735-49. PMID 18583532 DOI: 10.1104/pp.108.122226 |
0.669 |
|
| 2008 |
Martens C, Vandepoele K, Van de Peer Y. Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species. Proceedings of the National Academy of Sciences of the United States of America. 105: 3427-32. PMID 18299576 DOI: 10.1073/pnas.0712248105 |
0.717 |
|
| 2008 |
Vandenbroucke K, Robbens S, Vandepoele K, Inzé D, Van De Peer Y, Van Breusegem F. Hydrogen peroxide-induced gene expression across kingdoms: A comparative analysis Molecular Biology and Evolution. 25: 507-516. PMID 18187560 DOI: 10.1093/molbev/msm276 |
0.788 |
|
| 2007 |
Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, ... ... Vandepoele K, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Plos One. 2: e1326. PMID 18094749 DOI: 10.1371/Journal.Pone.0001326 |
0.683 |
|
| 2007 |
Peres A, Churchman ML, Hariharan S, Himanen K, Verkest A, Vandepoele K, Magyar Z, Hatzfeld Y, Van Der Schueren E, Beemster GT, Frankard V, Larkin JC, Inzé D, De Veylder L. Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses. The Journal of Biological Chemistry. 282: 25588-96. PMID 17599908 DOI: 10.1074/jbc.M703326200 |
0.317 |
|
| 2007 |
Sterck L, Rombauts S, Vandepoele K, Rouzé P, Van de Peer Y. How many genes are there in plants (... and why are they there)? Current Opinion in Plant Biology. 10: 199-203. PMID 17289424 DOI: 10.1016/j.pbi.2007.01.004 |
0.714 |
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| 2007 |
Rymen B, Fiorani F, Kartal F, Vandepoele K, Inzé D, Beemster GT. Cold nights impair leaf growth and cell cycle progression in maize through transcriptional changes of cell cycle genes. Plant Physiology. 143: 1429-38. PMID 17208957 DOI: 10.1104/pp.106.093948 |
0.64 |
|
| 2006 |
Vandepoele K, Casneuf T, Van de Peer Y. Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics. Genome Biology. 7: R103. PMID 17090307 DOI: 10.1186/gb-2006-7-11-r103 |
0.68 |
|
| 2006 |
Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, Van de Peer Y. The gain and loss of genes during 600 million years of vertebrate evolution Genome Biology. 7. PMID 16723033 DOI: 10.1186/gb-2006-7-5-r43 |
0.702 |
|
| 2006 |
Vandepoele K, Casneuf T, Van de Peer Y. Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics Genome Biology. 7. DOI: 10.1186/gb-2006-7-11-r103 |
0.678 |
|
| 2005 |
Vandepoele K, Vlieghe K, Florquin K, Hennig L, Beemster GTS, Gruissem W, Van De Peer Y, Inzé D, De Veylder L. Genome-wide identification of potential plant E2F target genes Plant Physiology. 139: 316-328. PMID 16126853 DOI: 10.1104/Pp.105.066290 |
0.813 |
|
| 2005 |
Paterson AH, Bowers JE, Van de Peer Y, Vandepoele K. Ancient duplication of cereal genomes. The New Phytologist. 165: 658-61. PMID 15720677 DOI: 10.1111/J.1469-8137.2005.01347.X |
0.639 |
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| 2005 |
Vandepoele K, Van De Peer Y. Exploring the plant transcriptome through phylogenetic profiling Plant Physiology. 137: 31-42. PMID 15644465 DOI: 10.1104/pp.104.054700 |
0.714 |
|
| 2004 |
Simillion C, Vandepoele K, Van de Peer Y. Recent developments in computational approaches for uncovering genomic homology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 26: 1225-35. PMID 15499578 DOI: 10.1002/BIES.20127 |
0.687 |
|
| 2004 |
Landrieu I, da Costa M, De Veylder L, Dewitte F, Vandepoele K, Hassan S, Wieruszeski JM, Corellou F, Faure JD, Van Montagu M, Inzé D, Lippens G. A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 101: 13380-5. PMID 15329414 DOI: 10.1073/pnas.0405248101 |
0.622 |
|
| 2004 |
Vercammen D, van de Cotte B, De Jaeger G, Eeckhout D, Casteels P, Vandepoele K, Vandenberghe I, Van Beeumen J, Inzé D, Van Breusegem F. Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine. The Journal of Biological Chemistry. 279: 45329-36. PMID 15326173 DOI: 10.1074/jbc.M406329200 |
0.611 |
|
| 2004 |
Simillion C, Vandepoele K, Saeys Y, Van de Peer Y. Building genomic profiles for uncovering segmental homology in the twilight zone. Genome Research. 14: 1095-106. PMID 15173115 DOI: 10.1101/GR.2179004 |
0.659 |
|
| 2004 |
Gevers D, Vandepoele K, Simillon C, Van de Peer Y. Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends in Microbiology. 12: 148-54. PMID 15116722 DOI: 10.1016/J.Tim.2004.02.007 |
0.798 |
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| 2004 |
Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer Y. Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 101: 1638-43. PMID 14757817 DOI: 10.1073/Pnas.0307968100 |
0.698 |
|
| 2004 |
Vandepoele K, Simillion C, Peer Y. The Quest for Genomic Homology Current Genomics. 5: 299-308. DOI: 10.2174/1389202043349237 |
0.311 |
|
| 2003 |
Vandepoele K, Simillion C, Van de Peer Y. Evidence that rice and other cereals are ancient aneuploids. The Plant Cell. 15: 2192-202. PMID 12953120 DOI: 10.1105/tpc.014019 |
0.705 |
|
| 2003 |
Raes J, Vandepoele K, Simillion C, Saeys Y, Van de Peer Y. Investigating ancient duplication events in the Arabidopsis genome. Journal of Structural and Functional Genomics. 3: 117-29. PMID 12836691 DOI: 10.1007/978-94-010-0263-9_12 |
0.762 |
|
| 2003 |
Breyne P, Dreesen R, Cannoot B, Rombaut D, Vandepoele K, Rombauts S, Vanderhaeghen R, Inzé D, Zabeau M. Quantitative cDNA-AFLP analysis for genome-wide expression studies. Molecular Genetics and Genomics : Mgg. 269: 173-9. PMID 12756529 DOI: 10.1007/s00438-003-0830-6 |
0.743 |
|
| 2003 |
Vandepoele K, Simillion C, Van de Peer Y. Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice. Trends in Genetics : Tig. 18: 606-8. PMID 12446138 DOI: 10.1016/S0168-9525(02)02796-8 |
0.711 |
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| 2002 |
Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y. The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. Genome Research. 12: 1792-801. PMID 12421767 DOI: 10.1101/Gr.400202 |
0.776 |
|
| 2002 |
Breyne P, Dreesen R, Vandepoele K, De Veylder L, Van Breusegem F, Callewaert L, Rombauts S, Raes J, Cannoot B, Engler G, Inzé D, Zabeau M. Transcriptome analysis during cell division in plants. Proceedings of the National Academy of Sciences of the United States of America. 99: 14825-30. PMID 12393816 DOI: 10.1073/Pnas.222561199 |
0.796 |
|
| 2002 |
Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y. The hidden duplication past of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 99: 13627-32. PMID 12374856 DOI: 10.1073/pnas.212522399 |
0.826 |
|
| 2002 |
Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D. Genome-wide analysis of core cell cycle genes in Arabidopsis. The Plant Cell. 14: 903-16. PMID 11971144 DOI: 10.1105/Tpc.010445 |
0.789 |
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