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Tzung-Fu Hsieh - Publications

Affiliations: 
Plant and Microbial Biology North Carolina State University, Raleigh, NC 
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wang YC, Hsieh WH, Lin LP, He MH, Jhan YT, Huang CJ, Zhan J, Chang CC, Hsieh TF, Lin JY. Dissecting the temporal genetic networks programming soybean embryo development from embryonic morphogenesis to post-germination. Plant Cell Reports. 43: 266. PMID 39422819 DOI: 10.1007/s00299-024-03354-0  0.326
2023 Frost JM, Lee J, Hsieh PH, Lin SJH, Min Y, Bauer M, Runkel AM, Cho HT, Hsieh TF, Fischer RL, Choi Y. H2A.X promotes endosperm-specific DNA methylation in Arabidopsis thaliana. Bmc Plant Biology. 23: 585. PMID 37993808 DOI: 10.1186/s12870-023-04596-y  0.595
2023 Lee J, Lee S, Park K, Shin SY, Frost JM, Hsieh PH, Shin C, Fischer RL, Hsieh TF, Choi Y. Distinct regulatory pathways contribute to dynamic CHH methylation patterns in transposable elements throughout embryogenesis. Frontiers in Plant Science. 14: 1204279. PMID 37360705 DOI: 10.3389/fpls.2023.1204279  0.596
2023 Frost JM, Lee J, Hsieh PH, Lin SJH, Min Y, Bauer M, Runkel AM, Cho HT, Hsieh TF, Fischer RL, Choi Y. H2A.X promotes endosperm-specific DNA methylation in Arabidopsis thaliana. Research Square. PMID 37333181 DOI: 10.21203/rs.3.rs-2974671/v1  0.641
2022 Han Q, Hung YH, Zhang C, Bartels A, Rea M, Yang H, Park C, Zhang XQ, Fischer RL, Xiao W, Hsieh TF. Loss of linker histone H1 in the maternal genome influences DEMETER-mediated demethylation and affects the endosperm DNA methylation landscape. Frontiers in Plant Science. 13: 1070397. PMID 36618671 DOI: 10.3389/fpls.2022.1070397  0.765
2022 Shin H, Park JE, Park HR, Choi WL, Yu SH, Koh W, Kim S, Soh HY, Waminal NE, Belandres HR, Lim JY, Yi G, Ahn JH, Kim JS, Kim YM, ... ... Hsieh TF, et al. Admixture of divergent genomes facilitates hybridization across species in the Brassicaceae family. The New Phytologist. PMID 35403705 DOI: 10.1111/nph.18155  0.426
2021 Tan Y, Wang C, Schneider T, Li H, de Souza RF, Tang X, Swisher Grimm KD, Hsieh TF, Wang X, Li X, Zhang D. Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Pathogens. Microbiology Spectrum. e0050921. PMID 34523996 DOI: 10.1128/Spectrum.00509-21  0.354
2021 Li M, Cui Q, Zhang XQ, Hsieh TF. Epigenetic Remodeling by DNA Glycosylases During Rice Reproduction. Molecular Plant. PMID 34273566 DOI: 10.1016/j.molp.2021.07.009  0.728
2019 Han Q, Bartels A, Cheng X, Meyer A, An YC, Hsieh TF, Xiao W. Epigenetics Regulates Reproductive Development in Plants. Plants (Basel, Switzerland). 8. PMID 31810261 DOI: 10.3390/plants8120564  0.53
2019 Zhang C, Hung YH, Rim HJ, Zhang D, Frost JM, Shin H, Jang H, Liu F, Xiao W, Iyer LM, Aravind L, Zhang XQ, Fischer RL, Huh JH, Hsieh TF. The catalytic core of DEMETER guides active DNA demethylation in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31409710 DOI: 10.1073/Pnas.1907290116  0.763
2019 Luan X, Liu S, Ke S, Dai H, Xie XM, Hsieh TF, Zhang XQ. Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice. Rice (New York, N.Y.). 12: 20. PMID 30945026 DOI: 10.1186/s12284-019-0282-1  0.493
2019 Ke S, Luan X, Liang J, Hung YH, Hsieh TF, Zhang XQ. Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth. Plant Molecular Biology. PMID 30840202 DOI: 10.1007/s11103-019-00849-3  0.761
2019 Ke S, Liu S, Luan X, Xie XM, Hsieh TF, Zhang XQ. Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice. Rice (New York, N.Y.). 12: 7. PMID 30758674 DOI: 10.1186/s12284-019-0266-1  0.414
2018 Bartels A, Han Q, Nair P, Stacey L, Gaynier H, Mosley M, Huang QQ, Pearson JK, Hsieh TF, An YC, Xiao W. Dynamic DNA Methylation in Plant Growth and Development. International Journal of Molecular Sciences. 19. PMID 30041459 DOI: 10.3390/ijms19072144  0.554
2017 Lowder LG, Zhou J, Zhang Y, Malzahn A, Zhong Z, Hsieh TF, Voytas DF, Zhang Y, Qi Y. Robust transcriptional activation in plants using multiplexed CRISPR-Act2.0 and mTALE-Act systems. Molecular Plant. PMID 29197638 DOI: 10.1016/J.Molp.2017.11.010  0.404
2017 Lin JY, Le BH, Chen M, Henry KF, Hur J, Hsieh TF, Chen PY, Pelletier JM, Pellegrini M, Fischer RL, Harada JJ, Goldberg RB. Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078418 DOI: 10.1073/Pnas.1716758114  0.653
2017 Zeng X, Tang R, Guo H, Ke S, Teng B, Hung YH, Xu Z, Xie XM, Hsieh TF, Zhang XQ. A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter. Plant Molecular Biology. PMID 28285416 DOI: 10.1007/s11103-017-0598-4  0.724
2016 Chaffin AS, Huang YF, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW, Wight CP, Chao S, Oliver R, Islamovic E, Kolb FL, ... ... Hsieh TF, et al. A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement. The Plant Genome. 9. PMID 27898818 DOI: 10.3835/plantgenome2015.10.0102  0.513
2016 Oliva M, Butenko Y, Hsieh TF, Hakim O, Katz A, Smorodinsky NI, Michaeli D, Fischer RL, Ohad N. FIE, a nuclear PRC2 protein, forms cytoplasmic complexes in Arabidopsis thaliana. Journal of Experimental Botany. 67: 6111-6123. PMID 27811080 DOI: 10.1093/Jxb/Erw373  0.621
2016 Hsieh TF. Epigenetics: A tug of war for DNA methylation. Nature Plants. 2: 16171. PMID 27808234 DOI: 10.1038/nplants.2016.171  0.473
2016 Mendizabal I, Shi L, Keller TE, Konopka G, Preuss TM, Hsieh TF, Hu E, Zhang Z, Su B, Yi SV. Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution. Molecular Biology and Evolution. PMID 27563052 DOI: 10.1093/Molbev/Msw176  0.649
2015 Lowder LG, Zhang D, Baltes NJ, Paul JW, Tang X, Zheng X, Voytas DF, Hsieh TF, Zhang Y, Qi Y. A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation. Plant Physiology. PMID 26297141 DOI: 10.1104/Pp.15.00636  0.451
2015 Hsieh TF. Whole-genome DNA methylation profiling with nucleotide resolution. Methods in Molecular Biology (Clifton, N.J.). 1284: 27-40. PMID 25757766 DOI: 10.1007/978-1-4939-2444-8_2  0.514
2015 Jeong CW, Park GT, Yun H, Hsieh TF, Choi YD, Choi Y, Lee JS. Control of paternally expressed imprinted UPWARD CURLY LEAF1, a gene encoding an f-box protein that regulates CURLY LEAF polycomb protein, in the arabidopsis endosperm. Plos One. 10: e0117431. PMID 25689861 DOI: 10.1371/journal.pone.0117431  0.576
2014 Mérai Z, Chumak N, García-Aguilar M, Hsieh TF, Nishimura T, Schoft VK, Bindics J, Slusarz L, Arnoux S, Opravil S, Mechtler K, Zilberman D, Fischer RL, Tamaru H. The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes. Proceedings of the National Academy of Sciences of the United States of America. 111: 16166-71. PMID 25344531 DOI: 10.1073/Pnas.1418564111  0.633
2012 Ibarra CA, Feng X, Schoft VK, Hsieh TF, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman D. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science (New York, N.Y.). 337: 1360-4. PMID 22984074 DOI: 10.1126/Science.1224839  0.655
2012 Duval M, Hsieh TF. Patenting applied to genetic sequence information. Biotechnology & Genetic Engineering Reviews. 23: 317-30. PMID 22530515 DOI: 10.1080/02648725.2006.10648091  0.23
2011 Pedersen B, Hsieh TF, Ibarra C, Fischer RL. MethylCoder: Software pipeline for bisulte-treated sequences Bioinformatics. 27: 2435-2436. PMID 21724594 DOI: 10.1093/Bioinformatics/Btr394  0.489
2011 Hsieh TF, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride RC, Harada JJ, Zilberman D, Fischer RL. Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences of the United States of America. 108: 1755-62. PMID 21257907 DOI: 10.1073/Pnas.1019273108  0.701
2009 Hsieh TF, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. Genome-wide demethylation of Arabidopsis endosperm. Science (New York, N.Y.). 324: 1451-4. PMID 19520962 DOI: 10.1126/Science.1172417  0.656
2008 Huh JH, Bauer MJ, Hsieh TF, Fischer RL. Cellular programming of plant gene imprinting. Cell. 132: 735-44. PMID 18329361 DOI: 10.1016/J.Cell.2008.02.018  0.671
2008 Stone SL, Braybrook SA, Paula SL, Kwong LW, Meuser J, Pelletier J, Hsieh TF, Fischer RL, Goldberg RB, Harada JJ. Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis. Proceedings of the National Academy of Sciences of the United States of America. 105: 3151-6. PMID 18287041 DOI: 10.1073/Pnas.0712364105  0.607
2007 Huh JH, Bauer MJ, Hsieh TF, Fischer R. Endosperm gene imprinting and seed development. Current Opinion in Genetics & Development. 17: 480-5. PMID 17962010 DOI: 10.1016/J.Gde.2007.08.011  0.694
2006 Gehring M, Huh JH, Hsieh TF, Penterman J, Choi Y, Harada JJ, Goldberg RB, Fischer RL. DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell. 124: 495-506. PMID 16469697 DOI: 10.1016/J.Cell.2005.12.034  0.656
2005 Hsieh TF, Fischer RL. Biology of chromatin dynamics Annual Review of Plant Biology. 56: 327-351. PMID 15862099 DOI: 10.1146/Annurev.Arplant.56.032604.144118  0.577
2003 Hsieh TF, Hakim O, Ohad N, Fischer RL. From flour to flower: How Polycomb group proteins influence multiple aspects of plant development Trends in Plant Science. 8: 439-445. PMID 13678911 DOI: 10.1016/S1360-1385(03)00189-4  0.652
2002 Duval M, Hsieh TF, Kim SY, Thomas TL. Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily. Plant Molecular Biology. 50: 237-48. PMID 12175016 DOI: 10.1023/A:1016028530943  0.7
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