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Na Ji, Ph.D. - Publications

Affiliations: 
2005 University of California, Berkeley, Berkeley, CA, United States 
Area:
Non-linear Optics
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pasarkar A, Kinsella I, Zhou P, Wu M, Pan D, Fan JL, Wang Z, Abdeladim L, Peterka DS, Adesnik H, Ji N, Paninski L. maskNMF: A denoise-sparsen-detect approach for extracting neural signals from dense imaging data. Biorxiv : the Preprint Server For Biology. PMID 37745388 DOI: 10.1101/2023.09.14.557777  0.327
2023 Paidi SK, Zhang Q, Yang Y, Xia CH, Ji N, Gong X. Adaptive Optical Two-Photon Fluorescence Microscopy Probes Cellular Organization of Ocular Lenses In Vivo. Investigative Ophthalmology & Visual Science. 64: 20. PMID 37306987 DOI: 10.1167/iovs.64.7.20  0.329
2023 Zhang Q, Hu Q, Berlage C, Kner P, Judkewitz B, Booth M, Ji N. Adaptive optics for optical microscopy [Invited]. Biomedical Optics Express. 14: 1732-1756. PMID 37078027 DOI: 10.1364/BOE.479886  0.389
2023 Wong KKY, Wei X, Ji N, Polli D, Vakoc BJ. Feature issue introduction: ultrafast optical imaging. Optics Express. 31: 8201-8204. PMID 36859936 DOI: 10.1364/OE.486054  0.36
2023 Paidi SK, Zhang Q, Yang Y, Xia CH, Ji N, Gong X. Adaptive optical two-photon fluorescence microscopy probes cellular organization of ocular lenses in vivo. Biorxiv : the Preprint Server For Biology. PMID 36711806 DOI: 10.1101/2023.01.17.524320  0.336
2021 Hampson KM, Turcotte R, Miller DT, Kurokawa K, Males JR, Ji N, Booth MJ. Adaptive optics for high-resolution imaging. Nature Reviews. Methods Primers. 1. PMID 35252878 DOI: 10.1038/s43586-021-00066-7  0.632
2021 Chen W, Natan RG, Yang Y, Chou SW, Zhang Q, Isacoff EY, Ji N. In vivo volumetric imaging of calcium and glutamate activity at synapses with high spatiotemporal resolution. Nature Communications. 12: 6630. PMID 34785691 DOI: 10.1038/s41467-021-26965-7  0.769
2021 Rodríguez C, Chen A, Rivera JA, Mohr MA, Liang Y, Natan RG, Sun W, Milkie DE, Bifano TG, Chen X, Ji N. An adaptive optics module for deep tissue multiphoton imaging in vivo. Nature Methods. 18: 1259-1264. PMID 34608309 DOI: 10.1038/s41592-021-01279-0  0.774
2021 Lai QTK, Yip GGK, Wu J, Wong JSJ, Lo MCK, Lee KCM, Le TTHD, So HKH, Ji N, Tsia KK. High-speed laser-scanning biological microscopy using FACED. Nature Protocols. PMID 34341580 DOI: 10.1038/s41596-021-00576-4  0.351
2021 Rodríguez C, Ji N. One wavelength to excite them all: deep tissue imaging going multicolor. Trends in Neurosciences. PMID 34274148 DOI: 10.1016/j.tins.2021.07.001  0.325
2021 Yang Y, Chen W, Fan JL, Ji N. Adaptive optics enables aberration-free single-objective remote focusing for two-photon fluorescence microscopy. Biomedical Optics Express. 12: 354-366. PMID 33520387 DOI: 10.1364/BOE.413049  0.356
2020 Saha D, Schmidt U, Zhang Q, Barbotin A, Hu Q, Ji N, Booth MJ, Weigert M, Myers EW. Practical sensorless aberration estimation for 3D microscopy with deep learning. Optics Express. 28: 29044-29053. PMID 33114810 DOI: 10.1364/Oe.401933  0.35
2020 Shemetov AA, Monakhov MV, Zhang Q, Canton-Josh JE, Kumar M, Chen M, Matlashov ME, Li X, Yang W, Nie L, Shcherbakova DM, Kozorovitskiy Y, Yao J, Ji N, Verkhusha VV. A near-infrared genetically encoded calcium indicator for in vivo imaging. Nature Biotechnology. PMID 33106681 DOI: 10.1038/s41587-020-0710-1  0.332
2020 Li Z, Zhang Q, Chou SW, Newman Z, Turcotte R, Natan R, Dai Q, Isacoff EY, Ji N. Fast widefield imaging of neuronal structure and function with optical sectioning in vivo. Science Advances. 6: eaaz3870. PMID 32494711 DOI: 10.1126/Sciadv.Aaz3870  0.769
2020 Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N. Rapid mesoscale volumetric imaging of neural activity with synaptic resolution. Nature Methods. PMID 32123393 DOI: 10.1038/S41592-020-0760-9  0.45
2020 Wu J, Liang Y, Chen S, Hsu CL, Chavarha M, Evans SW, Shi D, Lin MZ, Tsia KK, Ji N. Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo. Nature Methods. PMID 32123392 DOI: 10.1038/S41592-020-0762-7  0.492
2019 Turcotte R, Liang Y, Tanimoto M, Zhang Q, Li Z, Koyama M, Betzig E, Ji N. Dynamic super-resolution structured illumination imaging in the living brain. Proceedings of the National Academy of Sciences of the United States of America. PMID 31028150 DOI: 10.1073/Pnas.1819965116  0.747
2019 Meng G, Liang Y, Sarsfield S, Jiang WC, Lu R, Dudman JT, Aponte Y, Ji N. High-throughput synapse-resolving two-photon fluorescence microendoscopy for deep-brain volumetric imaging . Elife. 8. PMID 30604680 DOI: 10.7554/Elife.40805  0.522
2018 Galiñanes GL, Marchand PJ, Turcotte R, Pellat S, Ji N, Huber D. Optical alignment device for two-photon microscopy. Biomedical Optics Express. 9: 3624-3639. PMID 30338144 DOI: 10.1364/Boe.9.003624  0.652
2018 Broussard GJ, Liang Y, Fridman M, Unger EK, Meng G, Xiao X, Ji N, Petreanu L, Tian L. In vivo measurement of afferent activity with axon-specific calcium imaging. Nature Neuroscience. PMID 30127424 DOI: 10.1038/S41593-018-0211-4  0.314
2018 Lu R, Tanimoto M, Koyama M, Ji N. 50 Hz volumetric functional imaging with continuously adjustable depth of focus. Biomedical Optics Express. 9: 1964-1976. PMID 29675332 DOI: 10.1364/Boe.9.001964  0.435
2018 Rodríguez C, Liang Y, Lu R, Ji N. Three-photon fluorescence microscopy with an axially elongated Bessel focus. Optics Letters. 43: 1914-1917. PMID 29652397 DOI: 10.1364/Ol.43.001914  0.479
2018 Rodríguez C, Ji N. Adaptive optical microscopy for neurobiology. Current Opinion in Neurobiology. 50: 83-91. PMID 29427808 DOI: 10.1016/J.Conb.2018.01.011  0.541
2018 Meng G, Liang Y, Sarsfield S, Jiang W, Lu R, Dudman JT, Aponte Y, Ji N. Author response: High-throughput synapse-resolving two-photon fluorescence microendoscopy for deep-brain volumetric imaging in vivo Elife. DOI: 10.7554/Elife.40805.020  0.418
2017 Grimm JB, Muthusamy AK, Liang Y, Brown TA, Lemon WC, Patel R, Lu R, Macklin JJ, Keller PJ, Ji N, Lavis LD. A general method to fine-tune fluorophores for live-cell and in vivo imaging. Nature Methods. PMID 28869757 DOI: 10.1038/Nmeth.4403  0.353
2017 Turcotte R, Liang Y, Ji N. Adaptive optical versus spherical aberration corrections for in vivo brain imaging. Biomedical Optics Express. 8: 3891-3902. PMID 28856058 DOI: 10.1364/Boe.8.003891  0.681
2017 Ji N. Adaptive optical fluorescence microscopy. Nature Methods. 14: 374-380. PMID 28362438 DOI: 10.1038/Nmeth.4218  0.51
2017 Lu R, Sun W, Liang Y, Kerlin A, Bierfeld J, Seelig JD, Wilson DE, Scholl B, Mohar B, Tanimoto M, Koyama M, Fitzpatrick D, Orger MB, Ji N. Video-rate volumetric functional imaging of the brain at synaptic resolution. Nature Neuroscience. PMID 28250408 DOI: 10.1364/Brain.2017.Brs2B.4  0.462
2016 Ji N, Freeman J, Smith SL. Technologies for imaging neural activity in large volumes. Nature Neuroscience. 19: 1154-1164. PMID 27571194 DOI: 10.1038/Nn.4358  0.447
2015 Bocarsly ME, Jiang WC, Wang C, Dudman JT, Ji N, Aponte Y. Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain. Biomedical Optics Express. 6: 4546-4556. PMID 26601017 DOI: 10.1364/Boe.6.004546  0.453
2015 Tan Z, Sun W, Chen TW, Kim D, Ji N. Neuronal Representation of Ultraviolet Visual Stimuli in Mouse Primary Visual Cortex. Scientific Reports. 5: 12597. PMID 26219604 DOI: 10.1038/Srep12597  0.307
2015 Wang K, Sun W, Richie CT, Harvey BK, Betzig E, Ji N. Direct wavefront sensing for high-resolution in vivo imaging in scattering tissue. Nature Communications. 6: 7276. PMID 26073070 DOI: 10.1038/Ncomms8276  0.657
2014 Ji N. The practical and fundamental limits of optical imaging in mammalian brains. Neuron. 83: 1242-5. PMID 25233304 DOI: 10.1016/J.Neuron.2014.08.009  0.39
2014 Wang C, Liu R, Milkie DE, Sun W, Tan Z, Kerlin A, Chen TW, Kim DS, Ji N. Multiplexed aberration measurement for deep tissue imaging in vivo. Nature Methods. 11: 1037-40. PMID 25128976 DOI: 10.1038/Nmeth.3068  0.513
2014 Liu R, Milkie DE, Kerlin A, MacLennan B, Ji N. Direct phase measurement in zonal wavefront reconstruction using multidither coherent optical adaptive technique. Optics Express. 22: 1619-28. PMID 24515167 DOI: 10.1364/Oe.22.001619  0.403
2013 Wang C, Ji N. Characterization and improvement of three-dimensional imaging performance of GRIN-lens-based two-photon fluorescence endomicroscopes with adaptive optics. Optics Express. 21: 27142-54. PMID 24216938 DOI: 10.1364/Oe.21.027142  0.516
2012 Wang C, Ji N. Pupil-segmentation-based adaptive optical correction of a high-numerical-aperture gradient refractive index lens for two-photon fluorescence endoscopy. Optics Letters. 37: 2001-3. PMID 22660101 DOI: 10.1364/Ol.37.002001  0.486
2012 Ji N, Sato TR, Betzig E. Characterization and adaptive optical correction of aberrations during in vivo imaging in the mouse cortex. Proceedings of the National Academy of Sciences of the United States of America. 109: 22-7. PMID 22190489 DOI: 10.1073/Pnas.1109202108  0.698
2011 Milkie DE, Betzig E, Ji N. Pupil-segmentation-based adaptive optical microscopy with full-pupil illumination. Optics Letters. 36: 4206-8. PMID 22048366 DOI: 10.1364/Ol.36.004206  0.671
2010 Ji N, Milkie DE, Betzig E. Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nature Methods. 7: 141-7. PMID 20037592 DOI: 10.1038/Nmeth.1411  0.69
2008 Ji N, Shroff H, Zhong H, Betzig E. Advances in the speed and resolution of light microscopy. Current Opinion in Neurobiology. 18: 605-16. PMID 19375302 DOI: 10.1016/J.Conb.2009.03.009  0.671
2008 Tian C, Ji N, Waychunas GA, Shen YR. Interfacial structures of acidic and basic aqueous solutions. Journal of the American Chemical Society. 130: 13033-9. PMID 18774819 DOI: 10.1021/Ja8021297  0.693
2008 Ji N, Ostroverkhov V, Tian CS, Shen YR. Characterization of vibrational resonances of water-vapor interfaces by phase-sensitive sum-frequency spectroscopy. Physical Review Letters. 100: 096102. PMID 18352727 DOI: 10.1103/Physrevlett.100.096102  0.477
2008 Ji N, Magee JC, Betzig E. High-speed, low-photodamage nonlinear imaging using passive pulse splitters. Nature Methods. 5: 197-202. PMID 18204458 DOI: 10.1038/Nmeth.1175  0.599
2007 Ji N, Ostroverkhov V, Chen CY, Shen YR. Phase-sensitive sum-frequency vibrational spectroscopy and its application to studies of interfacial alkyl chains. Journal of the American Chemical Society. 129: 10056-7. PMID 17661466 DOI: 10.1021/Ja071989T  0.475
2006 Ji N, Ostroverkhov V, Belkin M, Shiu YJ, Shen YR. Toward chiral sum-frequency spectroscopy. Journal of the American Chemical Society. 128: 8845-8. PMID 16819878 DOI: 10.1021/Ja060888C  0.617
2006 Ji N, Zhang K, Yang H, Shen YR. Three-dimensional chiral imaging by sum-frequency generation. Journal of the American Chemical Society. 128: 3482-3. PMID 16536497 DOI: 10.1021/Ja057775Y  0.627
2006 Ji N, Shen YR. A novel spectroscopic probe for molecular chirality. Chirality. 18: 146-58. PMID 16432921 DOI: 10.1002/Chir.20238  0.52
2006 Zhang K, Ji N, Yang H, Shen YR. Optically active sum frequency generation microscopy for cell imaging Optics Infobase Conference Papers.  0.361
2005 Ji N, Shen YR. A dynamic coupling model for sum frequency chiral response from liquids composed of molecules with a chiral side chain and an achiral chromophore. Journal of the American Chemical Society. 127: 12933-42. PMID 16159287 DOI: 10.1021/Ja052715D  0.499
2004 Ji N, Shen YR. Optically active sum frequency generation from molecules with a chiral center: amino acids as model systems. Journal of the American Chemical Society. 126: 15008-9. PMID 15547980 DOI: 10.1021/Ja045708I  0.51
2004 Ji N, Shen YR. Sum frequency vibrational spectroscopy of leucine molecules adsorbed at air-water interface. The Journal of Chemical Physics. 120: 7107-12. PMID 15267614 DOI: 10.1063/1.1669375  0.461
2003 Ji N, Ostroverkhov V, Lagugné-Labarthet F, Shen YR. Surface vibrational spectroscopy on shear-aligned poly(tetrafluoroethylene) films. Journal of the American Chemical Society. 125: 14218-9. PMID 14624537 DOI: 10.1021/Ja037964L  0.438
2002 Han SH, Ji N, Belkin MA, Shen YR. Sum-frequency spectroscopy of electronic resonances on a chiral surface monolayer of bi-naphthol Physical Review B - Condensed Matter and Materials Physics. 66: 1654151-1654156. DOI: 10.1103/Physrevb.66.165415  0.561
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