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Biao Ding - Publications

Affiliations: 
Oklahoma State University, Stillwater, OK, United States 
Area:
Biochemistry
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59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Wu J, Leontis NB, Zirbel CL, Bisaro DM, Ding B. Correction: A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana. Plos Pathogens. 18: e1010421. PMID 35316309 DOI: 10.1371/journal.ppat.1010421  0.417
2020 Wu J, Zhou C, Li J, Li C, Tao X, Leontis NB, Zirbel CL, Bisaro DM, Ding B. Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA. Nucleic Acids Research. PMID 33313761 DOI: 10.1093/nar/gkaa1211  0.699
2020 Wu J, Zhou C, Li J, Li C, Tao X, Leontis NB, Zirbel CL, Bisaro DM, Ding B. Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA. Nucleic Acids Research. PMID 32083649 DOI: 10.1093/Nar/Gkaa100  0.73
2019 Wu J, Leontis NB, Zirbel CL, Bisaro DM, Ding B. A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana. Plos Pathogens. 15: e1008147. PMID 31644572 DOI: 10.1371/Journal.Ppat.1008147  0.591
2018 Takeda R, Zirbel CL, Leontis NB, Wang Y, Ding B. Allelic RNA Motifs in Regulating Systemic Trafficking of Potato Spindle Tuber Viroid. Viruses. 10. PMID 29601476 DOI: 10.3390/V10040160  0.673
2018 Wang Y, Zirbel CL, Leontis NB, Ding B. RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution. Plos Pathogens. 14: e1006801. PMID 29470541 DOI: 10.1371/Journal.Ppat.1006801  0.606
2017 Zheng Y, Ding B, Fei Z, Wang Y. Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors. Scientific Reports. 7: 9771. PMID 28852064 DOI: 10.1038/S41598-017-10143-1  0.552
2017 Zheng Y, Wang Y, Ding B, Fei Z. Comprehensive transcriptome analyses reveal that potato spindle tuber viroid triggers genome-wide changes in alternative splicing, inducible trans-acting activity of phasiRNAs and immune responses. Journal of Virology. PMID 28331096 DOI: 10.1128/Jvi.00247-17  0.564
2016 Jin L, Qin Q, Wang Y, Pu Y, Liu L, Wen X, Ji S, Wu J, Wei C, Ding B, Li Y. Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development. Plos Pathogens. 12: e1005847. PMID 27606959 DOI: 10.1371/Journal.Ppat.1005847  0.361
2016 Wang Y, Qu J, Ji S, Wallace AJ, Wu J, Li Y, Gopalan V, Ding B. A Land Plant-specific Transcription Factor Directly Enhances Transcription of a Pathogenic Noncoding RNA Template by DNA-dependent RNA Polymerase II. The Plant Cell. PMID 27113774 DOI: 10.1105/Tpc.16.00100  0.616
2015 Zheng Y, Wang Y, Wu J, Ding B, Fei Z. A dynamic evolutionary and functional landscape of plant phased small interfering RNAs. Bmc Biology. 13: 32. PMID 25980406 DOI: 10.1186/S12915-015-0142-4  0.509
2014 Liu N, Wu S, Van Houten J, Wang Y, Ding B, Fei Z, Clarke TH, Reed JW, van der Knaap E. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. Journal of Experimental Botany. 65: 2507-20. PMID 24723401 DOI: 10.1093/Jxb/Eru141  0.46
2011 Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B. Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. The Plant Cell. 23: 3185-203. PMID 21917547 DOI: 10.1105/Tpc.111.088013  0.753
2011 Takeda R, Petrov AI, Leontis NB, Ding B. A three-dimensional RNA motif in Potato spindle tuber viroid mediates trafficking from palisade mesophyll to spongy mesophyll in Nicotiana benthamiana. The Plant Cell. 23: 258-72. PMID 21258006 DOI: 10.1105/Tpc.110.081414  0.626
2010 Ding B. Viroids: self-replicating, mobile, and fast-evolving noncoding regulatory RNAs. Wiley Interdisciplinary Reviews. Rna. 1: 362-75. PMID 21956936 DOI: 10.1002/wrna.22  0.588
2010 Wang Y, Ding B. Viroids: Small probes for exploring the vast universe of RNA trafficking in plants Journal of Integrative Plant Biology. 52: 28-39. PMID 20074138 DOI: 10.1111/J.1744-7909.2010.00900.X  0.638
2009 Takeda R, Ding B. Viroid intercellular trafficking: RNA motifs, cellular factors and broad impacts. Viruses. 1: 210-21. PMID 21994546 DOI: 10.3390/v1020210  0.557
2009 Schwind N, Zwiebel M, Itaya A, Ding B, Wang MB, Krczal G, Wassenegger M. RNAi-mediated resistance to Potato spindle tuber viroid in transgenic tomato expressing a viroid hairpin RNA construct. Molecular Plant Pathology. 10: 459-69. PMID 19523100 DOI: 10.1111/J.1364-3703.2009.00546.X  0.759
2009 Qian S, Zhong X, Yu L, Ding B, de Haan P, Boris-Lawrie K. HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1. Proceedings of the National Academy of Sciences of the United States of America. 106: 605-10. PMID 19122141 DOI: 10.1073/Pnas.0806822106  0.765
2009 Ding B, Wang Y. Viroids: uniquely simple and tractable models to elucidate regulation of cell-to-cell trafficking of RNA. Dna and Cell Biology. 28: 51-6. PMID 19105595 DOI: 10.1089/Dna.2008.0811  0.664
2008 Zhong X, Ding B. Distinct RNA motifs mediate systemic RNA trafficking. Plant Signaling & Behavior. 3: 58-9. PMID 19704772 DOI: 10.4161/Psb.3.1.4890  0.805
2008 Zhong X, Archual AJ, Amin AA, Ding B. A genomic map of viroid RNA motifs critical for replication and systemic trafficking. The Plant Cell. 20: 35-47. PMID 18178767 DOI: 10.1105/Tpc.107.056606  0.806
2008 Itaya A, Bundschuh R, Archual AJ, Joung JG, Fei Z, Dai X, Zhao PX, Tang Y, Nelson RS, Ding B. Small RNAs in tomato fruit and leaf development. Biochimica Et Biophysica Acta. 1779: 99-107. PMID 18078843 DOI: 10.1016/J.Bbagrm.2007.09.003  0.734
2007 Zhou F, Pu Y, Wei T, Wei T, Liu H, Deng W, Wei C, Ding B, Omura T, Li Y. The P2 capsid protein of the nonenveloped rice dwarf phytoreovirus induces membrane fusion in insect host cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 19547-52. PMID 18042708 DOI: 10.1073/Pnas.0708946104  0.376
2007 Itaya A, Bundschuh R, Archual AJ, Joung JG, Fei Z, Dai X, Zhao PX, Tang Y, Nelson RS, Ding B. WITHDRAWN: Small RNAs in tomato fruit and leaf development. Biochimica Et Biophysica Acta. PMID 17976836 DOI: 10.1016/J.Bbaexp.2007.09.002  0.643
2007 Zhong X, Tao X, Stombaugh J, Leontis N, Ding B. Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking. The Embo Journal. 26: 3836-46. PMID 17660743 DOI: 10.1038/Sj.Emboj.7601812  0.834
2007 Ding B, Itaya A. Viroid: a useful model for studying the basic principles of infection and RNA biology. Molecular Plant-Microbe Interactions : Mpmi. 20: 7-20. PMID 17249418 DOI: 10.1094/Mpmi-20-0007  0.773
2007 Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R, Harris AR, Molina C, Nelson RS, Ding B. A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. Journal of Virology. 81: 2980-94. PMID 17202210 DOI: 10.1128/Jvi.02339-06  0.847
2007 Wang Y, Zhong X, Itaya A, Ding B. Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo. Journal of Virology. 81: 2074-7. PMID 17135317 DOI: 10.1128/Jvi.01781-06  0.831
2007 Ding B, Itaya A. Control of directional macromolecular trafficking across specific cellular boundaries: A key to integrative plant biology Journal of Integrative Plant Biology. 49: 1227-1234. DOI: 10.1111/J.1672-9072.2007.00542.X  0.737
2007 Ding B, Itaya A. Intracellular and intercellular transport of viroids Plant Cell Monographs. 7: 119-126. DOI: 10.1007/7089_2006_102  0.712
2006 Zhong X, Leontis N, Qian S, Itaya A, Qi Y, Boris-Lawrie K, Ding B. Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replication. Journal of Virology. 80: 8566-81. PMID 16912306 DOI: 10.1128/Jvi.00837-06  0.835
2006 Ding B. Intracellular and intercellular RNA trafficking in plants Microscopy and Microanalysis. 12: 436. DOI: 10.1017/S1431927606063318  0.537
2005 Zhong X, Itaya A, Ding B. Transfecting protoplasts by electroporation to study viroid replication. Current Protocols in Microbiology. Unit 16D.4. PMID 18770558 DOI: 10.1002/9780471729259.Mc16D04S00  0.751
2005 Cao X, Zhou P, Zhang X, Zhu S, Zhong X, Xiao Q, Ding B, Li Y. Identification of an RNA silencing suppressor from a plant double-stranded RNA virus. Journal of Virology. 79: 13018-27. PMID 16189004 DOI: 10.1128/Jvi.79.20.13018-13027.2005  0.809
2005 Ding B, Itaya A, Zhong X. Viroid trafficking: a small RNA makes a big move. Current Opinion in Plant Biology. 8: 606-12. PMID 16181802 DOI: 10.1016/J.Pbi.2005.09.001  0.833
2004 Qi Y, Zhong X, Itaya A, Ding B. Dissecting RNA silencing in protoplasts uncovers novel effects of viral suppressors on the silencing pathway at the cellular level. Nucleic Acids Research. 32: e179. PMID 15601991 DOI: 10.1093/Nar/Gnh180  0.848
2004 Qi Y, Pélissier T, Itaya A, Hunt E, Wassenegger M, Ding B. Direct role of a viroid RNA motif in mediating directional RNA trafficking across a specific cellular boundary. The Plant Cell. 16: 1741-52. PMID 15194818 DOI: 10.1105/Tpc.021980  0.823
2003 Ding B, Itaya A, Qi Y. Symplasmic protein and RNA traffic: regulatory points and regulatory factors. Current Opinion in Plant Biology. 6: 596-602. PMID 14611959 DOI: 10.1016/J.Pbi.2003.09.010  0.79
2003 Qi Y, Ding B. Differential subnuclear localization of RNA strands of opposite polarity derived from an autonomously replicating viroid. The Plant Cell. 15: 2566-77. PMID 14555700 DOI: 10.1105/Tpc.016576  0.769
2003 Qi Y, Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. The Plant Cell. 15: 1360-74. PMID 12782729 DOI: 10.1105/Tpc.011585  0.76
2002 Qi Y, Ding B. Replication of Potato spindle tuber viroid in cultured cells of tobacco and Nicotiana benthamiana: the role of specific nucleotides in determining replication levels for host adaptation. Virology. 302: 445-56. PMID 12441088 DOI: 10.1006/Viro.2002.1662  0.615
2002 Itaya A, Matsuda Y, Gonzales RA, Nelson RS, Ding B. Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato. Molecular Plant-Microbe Interactions : Mpmi. 15: 990-9. PMID 12437296 DOI: 10.1094/Mpmi.2002.15.10.990  0.736
2002 Matsuda Y, Liang G, Zhu Y, Ma F, Nelson RS, Ding B. The Commelina yellow mottle virus promoter drives companion-cell-specific gene expression in multiple organs of transgenic tobacco. Protoplasma. 220: 51-8. PMID 12417936 DOI: 10.1007/S00709-002-0027-6  0.598
2002 Zhu Y, Qi Y, Xun Y, Owens R, Ding B. Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic. Plant Physiology. 130: 138-46. PMID 12226494 DOI: 10.1104/Pp.006403  0.779
2002 Itaya A, Ma F, Qi Y, Matsuda Y, Zhu Y, Liang G, Ding B. Plasmodesma-mediated selective protein traffic between "symplasmically isolated" cells probed by a viral movement protein. The Plant Cell. 14: 2071-83. PMID 12215506 DOI: 10.1105/Tpc.003954  0.732
2001 Itaya A, Folimonov A, Matsuda Y, Nelson RS, Ding B. Potato spindle tuber viroid as inducer of RNA silencing in infected tomato. Molecular Plant-Microbe Interactions : Mpmi. 14: 1332-4. PMID 11763132 DOI: 10.1094/Mpmi.2001.14.11.1332  0.812
2001 Zhu Y, Green L, Woo Y, Owens R, Ding B. Cellular basis of potato spindle tuber viroid systemic movement. Virology. 279: 69-77. PMID 11145890 DOI: 10.1006/Viro.2000.0724  0.557
2000 Itaya A, Liang G, Woo Y, Nelson RS, Ding B. Nonspecific intercellular protein trafficking probed by green-fluorescent protein in plants Protoplasma. 213: 165-175. DOI: 10.1007/Bf01282154  0.606
1999 Woo YM, Itaya A, Owens RA, Tang L, Hammond RW, Chou HC, Lai MMC, Ding B. Characterization of nuclear import of potato spindle tuber viroid RNA in permeabilized protoplasts Plant Journal. 17: 627-635. DOI: 10.1046/j.1365-313X.1999.00412.x  0.714
1999 Ding B, Itaya A, Woo YM. Plasmodesmata and cell-to-cell communication in plants International Review of Cytology. 190: 251-316. DOI: 10.1016/S0074-7696(08)62149-X  0.619
1998 Itaya A, Woo YM, Masuta C, Bao Y, Nelson RS, Ding B. Developmental regulation of intercellular protein trafficking through plasmodesmata in tobacco leaf epidermis Plant Physiology. 118: 373-85. PMID 9765523 DOI: 10.1104/Pp.118.2.373  0.615
1998 Ding B. Intercellular protein trafficking through plasmodesmata Plant Molecular Biology. 38: 279-310. PMID 9738972  0.317
1997 Ding B, Kwon M, Hammond R, Owens R. Cell-to-cell movement of potato spindle tuber viroid Plant Journal. 12: 931-936. PMID 9375403 DOI: 10.1046/J.1365-313X.1997.12040931.X  0.479
1997 Itaya A, Hickman H, Bao Y, Nelson R, Ding B. Cell-to-cell trafficking of cucumber mosaic virus movement protein:green fluorescent protein fusion produced by biolistic gene bombardment in tobacco The Plant Journal. 12: 1223-1230. DOI: 10.1046/J.1365-313X.1997.12051223.X  0.579
1994 Franceschi V, Ding B, Lucas W. Mechanism of plasmodesmata formation in characean algae in relation to evolution of intercellular communication in higher plants Planta. 192. DOI: 10.1007/Bf00198570  0.534
1993 Lucas WJ, Ding B, VAN DER Schoot C. Plasmodesmata and the supracellular nature of plants. The New Phytologist. 125: 435-476. PMID 33874589 DOI: 10.1111/j.1469-8137.1993.tb03897.x  0.552
1993 LUCAS WJ, DING B, SCHOOT C. Plasmodesmata and the supracellular nature of plants New Phytologist. 125: 435-476. DOI: 10.1111/J.1469-8137.1993.Tb03897.X  0.553
1993 Lapidot M, Gafny R, Ding B, Wolf S, Lucas WJ, Beachy RN. A dysfunctional movement protein of tobacco mosaic virus that partially modifies the plasmodesmata and limits virus spread in transgenic plants The Plant Journal. 4: 959-970. DOI: 10.1046/J.1365-313X.1993.04060959.X  0.517
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