Ponzy Lu, PhD - Publications

Affiliations: 
Chemistry University of Pennsylvania, Philadelphia, PA, United States 
Area:
biochemistry, molecular biology
Website:
https://www.chem.upenn.edu/profile/ponzy-lu

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2010 Jarema MA, Lu P, Miller JH. Lac repressor: a genetic and nuclear magnetic resonance study of structure and function. Biophysical Journal. 32: 450-2. PMID 19431390 DOI: 10.1016/S0006-3495(80)84978-2  0.394
2008 Pattanayak V, Gifford LK, Lu P, Gewirtz AM. Observed versus predicted structure of fluorescent self-quenching reporter molecules (SQRM): caveats with respect to the use of "stem-loop" oligonucleotides as probes for mRNA folding. Rna (New York, N.Y.). 14: 657-65. PMID 18359781 DOI: 10.1261/Rna.890408  0.742
2005 Gifford LK, Jordan D, Pattanayak V, Vernovsky K, Do BT, Gewirtz AM, Lu P. Stemless self-quenching reporter molecules identify target sequences in mRNA. Analytical Biochemistry. 347: 77-88. PMID 16246289 DOI: 10.1016/J.Ab.2005.08.030  0.759
2005 Bates SR, Baldwin DA, Channing A, Gifford LK, Hsu A, Lu P. Cooperativity of paired oligonucleotide probes for microarray hybridization assays. Analytical Biochemistry. 342: 59-68. PMID 15958181 DOI: 10.1016/J.Ab.2005.03.030  0.754
2005 Gifford LK, Opalinska JB, Jordan D, Pattanayak V, Greenham P, Kalota A, Robbins M, Vernovsky K, Rodriguez LC, Do BT, Lu P, Gewirtz AM. Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules. Nucleic Acids Research. 33: e28. PMID 15718294 DOI: 10.1093/Nar/Gni024  0.756
2004 Opalinska JB, Kalota A, Gifford LK, Lu P, Jen KY, Pradeepkumar PI, Barman J, Kim TK, Swider CR, Chattopadhyaya J, Gewirtz AM. Oxetane modified, conformationally constrained, antisense oligodeoxyribonucleotides function efficiently as gene silencing molecules. Nucleic Acids Research. 32: 5791-9. PMID 15514112 DOI: 10.1093/Nar/Gkh893  0.746
2002 Rizzo J, Gifford LK, Zhang X, Gewirtz AM, Lu P. Chimeric RNA-DNA molecular beacon assay for ribonuclease H activity. Molecular and Cellular Probes. 16: 277-83. PMID 12270269 DOI: 10.1006/Mcpr.2002.0423  0.755
2002 MacDonald D, Lu P. Determination of DNA structure in solution: enzymatic deuteration of the ribose 2' carbon. Journal of the American Chemical Society. 124: 9722-3. PMID 12175227 DOI: 10.1021/Ja026678R  0.387
2001 MacDonald D, Herbert K, Zhang X, Polgruto T, Lu P. Solution structure of an A-tract DNA bend Journal of Molecular Biology. 306: 1081-1098. PMID 11237619 DOI: 10.1006/Jmbi.2001.4447  0.359
2001 MacDonald D, Herbert K, Zhang X, Polgruto T, Lu P. CorrigendumSolution structure of an A-tract DNA bend Journal of Molecular Biology. 307. DOI: 10.1006/Jmbi.2001.4599  0.371
1998 Sokol DL, Zhang X, Lu P, Gewirtz AM. Real time detection of DNA·RNA hybridization in living cells Proceedings of the National Academy of Sciences of the United States of America. 95: 11538-11543. PMID 9751701 DOI: 10.1073/Pnas.95.20.11538  0.424
1997 Pace HC, Kercher MA, Lu P, Markiewicz P, Miller JH, Chang G, Lewis M. Lac repressor genetic map in real space Trends in Biochemical Sciences. 22: 334-339. PMID 9301333 DOI: 10.1016/S0968-0004(97)01104-3  0.314
1997 Kercher MA, Lu P, Lewis M. Lac repressor-operator complex Current Opinion in Structural Biology. 7: 76-85. PMID 9032054 DOI: 10.1016/S0959-440X(97)80010-3  0.321
1997 Horton N, Lewis M, Lu P. Escherichia coli lac repressor-lac operator interaction and the influence of allosteric effectors Journal of Molecular Biology. 265: 1-7. PMID 8995519 DOI: 10.1006/Jmbi.1996.0706  0.381
1997 Evilia C, Zhang X, Kanyo J, Lu P. The synthesis of oligonucleotides containing fluoro-2'-deoxycytidine for secondary structure determination of tandem tetraloop DNA analogs Nucleosides and Nucleotides. 16: 1809-1820. DOI: 10.1080/07328319708002535  0.396
1996 Duhamel J, Kanyo J, Dinter-Gottlieb G, Lu P. Fluorescence emission of ethidium bromide intercalated in defined DNA duplexes: Evaluation of hydrodynamics components Biochemistry. 35: 16687-16697. PMID 8988005 DOI: 10.1021/Bi9610919  0.46
1996 Kanyo JE, Duhamel J, Lu P. Secondary structure of the r(CUUCGG) tetraloop Nucleic Acids Research. 24: 4015-4022. PMID 8918806 DOI: 10.1093/Nar/24.20.4015  0.374
1996 Duhamel J, Liu DM, Evilia C, Fleysh N, Dinter-Gottlieb G, Lu P. Secondary structure content of the HDV ribozyme in 95% formamide Nucleic Acids Research. 24: 3911-3917. PMID 8918791 DOI: 10.1093/Nar/24.20.3911  0.374
1996 Artz PG, Valentine KG, Opella SJ, Lu P. Lac repressor - Operator interaction: N-terminal peptide backbone 1H and 15N chemical shifts upon complex formation with DNA Journal of Molecular Recognition. 9: 13-22. PMID 8723315 DOI: 10.1002/(Sici)1099-1352(199601)9:1<13::Aid-Jmr234>3.0.Co;2-T  0.407
1996 Lewis M, Chang G, Horton NC, Kercher MA, Pace HC, Schumacher MA, Brennan RG, Lu P. Crystal structure of the lactose operon represser and its complexes with DNA and inducer Science. 271: 1247-1254. PMID 8638105 DOI: 10.1126/Science.271.5253.1247  0.43
1996 Kercher MA, Chang G, Horton NC, Lu P, Miller JH, Pace HC, Lewis M. Structure of the lactose operon repressor and its complexes with DNA and inducer Acta Crystallographica Section a Foundations of Crystallography. 52: C156-C156. DOI: 10.1107/S0108767396093002  0.364
1995 Rastinejad F, Evilia C, Lu P. [23] Studies of nucleic acids and their protein interactions by 19F NMR Methods in Enzymology. 261: 560-575. PMID 8569512 DOI: 10.1016/S0076-6879(95)61025-1  0.342
1994 Chee DW, Cho YI, Cho K, Lu P. DNA orientation during electrophoresis in a viscoelastic solution Separations Technology. 4: 55-61. DOI: 10.1016/0956-9618(94)80006-5  0.351
1993 Rastinejad F, Artz P, Lu P. Origin of the asymmetrical contact between lac repressor and lac operator DNA Journal of Molecular Biology. 233: 389-399. PMID 8411152 DOI: 10.1006/Jmbi.1993.1519  0.449
1993 Rastinejad F, Lu P. Bacteriophage T7 RNA polymerase: 19F-nuclear magnetic resonance observations at 5-Fluorouracil-substituted promoter DNA and RNA transcript Journal of Molecular Biology. 232: 105-122. PMID 8331654 DOI: 10.1006/Jmbi.1993.1373  0.426
1993 Rastinejad F, Artz P, Lu P. One- and Two-Dimensional 19F-NMR Methods for Proteins and Nucleic Acids Techniques in Protein Chemistry. 585-594. DOI: 10.1016/B978-0-12-058757-5.50069-X  0.393
1992 Donlan ME, Lu P. Transcriptional enhancer related DNA sequences: Anomalous 1H NMR NOE crosspeaks Nucleic Acids Research. 20: 525-532. PMID 1311077 DOI: 10.1093/Nar/20.3.525  0.427
1991 Khoury AM, Nick HS, Lu P. In vivo interaction of Escherichia coli lac repressor N-terminal fragments with the lac operator. Journal of Molecular Biology. 219: 623-34. PMID 1905359 DOI: 10.1016/0022-2836(91)90659-T  0.652
1990 Pace HC, Lu P, Lewis M. lac Repressor: Crystallization of intact tetramer and its complexes with inducer and operator DNA Proceedings of the National Academy of Sciences of the United States of America. 87: 1870-1873. PMID 2408042 DOI: 10.1073/Pnas.87.5.1870  0.378
1990 Cook J, Holtom G, Lu P. Detection of protein-DNA complex formation by time-resolved fluorescence depolarization of bound ethidium bromide Analytical Biochemistry. 190: 331-339. PMID 2291477 DOI: 10.1016/0003-2697(90)90204-M  0.448
1990 Mitchell MJ, Hirschowitz W, Rastinejad F, Lu P. Boron trifluoride-methanol complex as a non-depurinating detritylating agent in DNA synthesis. Nucleic Acids Research. 18: 5321. PMID 2205845 DOI: 10.1093/Nar/18.17.5321  0.331
1990 Khoury AM, Lee HJ, Lillis M, Lu P. Lac repressor-operator interaction: DNA length dependence Bba - Gene Structure and Expression. 1087: 55-60. PMID 2205296 DOI: 10.1016/0167-4781(90)90120-Q  0.361
1989 Metzler WJ, Lu P. λ cro Represser complex with OR3 operator DNA. 19F nuclear magnetic resonance observations Journal of Molecular Biology. 205: 149-164. PMID 2522553 DOI: 10.1016/0022-2836(89)90372-0  0.427
1987 Leighton P, Lu P. λ cro repressor complex with OR 3 DNA: 15N NMR observations Biochemistry. 26: 7262-7271. PMID 2962634 DOI: 10.1021/Bi00397A011  0.354
1986 Donlan M, Cheung S, Lu P. NMR Studies of an SV40 Enhancer Core DNA Sequence. Biophysical Journal. 49: 26-29. PMID 19431632 DOI: 10.1016/S0006-3495(86)83580-9  0.402
1985 Metzler WJ, Arndt K, Tecza E, Wasilewski J, Lu P. λ Phage cro repressor interaction with its operator DNA: 2′-Deoxy-5-fluorouracil OR3 analogues Biochemistry. 24: 1418-1424. PMID 3157402 DOI: 10.1021/Bi00327A020  0.421
1985 Metzler W, Arndt K, Tecza E, Wasilewski J, Lu P. Corrections - λ Phage cro Repressor Interaction with Its Operator DNA: 2'-Deoxy-5-fluorouracil OR3 Analogues Biochemistry. 24: 7853-7853. DOI: 10.1021/Bi00347A605  0.365
1984 Cheung S, Arndt K, Lu P. Correlation of lac operator DNA imino proton exchange kinetics with its function Proceedings of the National Academy of Sciences of the United States of America. 81: 3665-3669. PMID 6328523 DOI: 10.1073/Pnas.81.12.3665  0.437
1983 Lu P, Cheung S, Arndt K. Possible molecular detent in the dna structure at regulatory sequences Journal of Biomolecular Structure and Dynamics. 1: 509-521. PMID 6401117 DOI: 10.1080/07391102.1983.10507458  0.426
1982 Nick H, Arndt K, Boschelli F, Jarema MA, Lillis M, Sadler J, Caruthers M, Lu P. lac repressor-lac operator interaction: NMR observations. Proceedings of the National Academy of Sciences of the United States of America. 79: 218-22. PMID 7043455 DOI: 10.1073/Pnas.79.2.218  0.652
1982 Arndt K, Nick H, Boschelli F, Lu P, Sadler J. Repressor--operator interaction in the lac operon. III. Nuclear magnetic resonance observations with altered amino-terminal DNA binding domains. Journal of Molecular Biology. 161: 439-57. PMID 6759663 DOI: 10.1016/0022-2836(82)90248-0  0.637
1982 Nick H, Arndt K, Boschelli F, Jarema MA, Lillis M, Sommer H, Lu P, Sadler J. Repressor--operator interaction in the lac operon. II. Observations at the tyrosines and tryptophans. Journal of Molecular Biology. 161: 417-38. PMID 6759662 DOI: 10.1016/0022-2836(82)90247-9  0.62
1982 Lillis M, Nick H, Lu P, Sadler J, Caruthers MH. Iac operon operator DNA: isolation and trimming for NMR spectroscopy. Analytical Biochemistry. 120: 52-8. PMID 6283934 DOI: 10.1016/0003-2697(82)90316-5  0.646
1982 Boschelli F, Arndt K, Nick H, Zhang Q, Lu P, Takeda Y. Lambda phage cro repressor. DNA sequence-dependent interactions seen by tyrosine fluorescence. Journal of Molecular Biology. 162: 251-66. PMID 6219228 DOI: 10.1016/0022-2836(82)90525-3  0.66
1981 Arndt KT, Boschelli F, Lu P, Miller JH. lac repressor: A proton magnetic resonance look at the deoxyribonucleic acid binding fragment Biochemistry. 20: 6109-6118. PMID 7030383 DOI: 10.1021/Bi00524A030  0.348
1981 Jarema MA, Lu P, Miller JH. Genetic assignment of resonances in the NMR spectrum of a protein: lac repressor Proceedings of the National Academy of Sciences of the United States of America. 78: 2707-2711. PMID 7019910 DOI: 10.1073/Pnas.78.5.2707  0.379
1979 Miller JH, Coulondre C, Hofer M, Schmeissner U, Sommer H, Schmitz A, Lu P. Genetic studies of the lac repressor. IX. Generation of altered proteins by the suppression of nonsence mutations Journal of Molecular Biology. 131: 191-218,IN1-IN4,219-. PMID 385890 DOI: 10.1016/0022-2836(79)90073-1  0.314
1971 Friedman H, Lu P, Rich A. Temperature control of initiation of protein synthesis in Escherichia coli. Journal of Molecular Biology. 61: 105-21. PMID 4947690 DOI: 10.1016/0022-2836(71)90209-9  0.39
1971 Lu P, Friedman H, Rich A. Temperature effects in the formation of the initiation complex in protein synthesis: a note of caution. Biochimica Et Biophysica Acta. 238: 343-6. PMID 4936436 DOI: 10.1016/0005-2787(71)90102-X  0.368
1971 Lu P, Rich A. The nature of the polypeptide chain termination signal. Journal of Molecular Biology. 58: 513-31. PMID 4933415 DOI: 10.1016/0022-2836(71)90368-8  0.412
1969 Friedman H, Lu P, Rich A. An in vivo block in the initiation of protein synthesis. Cold Spring Harbor Symposia On Quantitative Biology. 34: 255-60. PMID 4909503 DOI: 10.1101/Sqb.1969.034.01.031  0.354
1969 Friedman H, Lu P, Rich A. Ribosomal subunits produced by cold sensitive initiation of protein synthesis. Nature. 223: 909-13. PMID 4896043 DOI: 10.1038/223909a0  0.365
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